LOC122342601


Basic Information

Item Value
gene id LOC122342601
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 16544954 ~ 16545621 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006250611.1
CTTTCTGTGGTGAATGAAAGGTGTTATTTTACTCCCTGCCATTAGAGGGCACTGGGAGCTATTACTGTGTAAGGTCTCTAGGCCAGAGAATAAAAGGAATGGGGAAGTTTAAATGAGGAGCACATGGAAGCTGAGGGTGTTTGCTCTCTCTATGCTTTTATTTGGAAACCCTTGTTGAGGAACATTTTGTTCTACATCTCAATaggggttttgtgtctgtctgattATGGGATCATCTACCCTGGTCACGGATCCTTCTCTTCAATATTGGGATTTTCATCCGAGTACTTTTTGAGGATTGCTATTCCCTTTGGATAAAGTTTACTGGATGGACTTGGATTTATCCTTTTTAACATCTATGCCTTGATGGACTGAGGACATGTGCAGTAACGTTGAGCTTCATTGTTGTGTggacattcaaatgtttttctttcaaatgtgaCTGCTGCTCTGAGATATGGTCATGATTGTTGTGCGGTTTCAAACTGTATGTCTTTTgggaatgtaaatataataagattGGTGGTGACAGATCCCTCCTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006250611.1 True 543 lncRNA 0.41 2 16544954 16545621

Neighbor

gene id symbol gene type direction distance location
LOC122342596 NA coding downstream 2052 16537980 ~ 16542902 (-)
LOC122342885 LOC107749047,LOC107728228,LOC107671223 coding downstream 46115 16484567 ~ 16498839 (-)
LOC122342598 NA coding downstream 61778 16477791 ~ 16483176 (-)
LOC122343883 NA coding downstream 524392 16020444 ~ 16020562 (-)
LOC122343926 NA coding downstream 524795 16020041 ~ 16020159 (-)
LOC122342599 LOC107749047 coding upstream 27506 16573127 ~ 16593094 (-)
LOC122343211 ptk2bb,LOC107589060,LOC107697310,LOC107701495,LOC107563684,LOC107707077 coding upstream 164903 16710524 ~ 16724794 (-)
kcnh5a kcnh5a,LOC107743971,LOC107697309,LOC107563685,LOC107701494,LOC107707078,LOC108434995 coding upstream 203095 16748716 ~ 16821470 (-)
ppp2r5ea ppp2r5ea,LOC107701493,LOC107707079,LOC107563687,LOC107697307,LOC107743972,LOC108434994,LOC108257929,LOC103032801 coding upstream 295084 16840705 ~ 16851156 (-)
sgpp1a si:ch211-212g7.6,LOC107697306,LOC107589063,LOC107743975,LOC107716492,LOC107701492,LOC107563688 coding upstream 307378 16852999 ~ 16864423 (-)
G28970 NA non-coding downstream 80275 16464445 ~ 16464679 (-)
G28966 NA non-coding downstream 83443 16460762 ~ 16461511 (-)
G28935 NA non-coding downstream 124815 16412527 ~ 16420139 (-)
G28933 NA non-coding downstream 124998 16411860 ~ 16419956 (-)
G28916 NA non-coding downstream 161284 16378700 ~ 16383670 (-)
LOC122342602 NA non-coding upstream 4712 16550333 ~ 16551004 (-)
G29012 NA non-coding upstream 64015 16609636 ~ 16609999 (-)
G29021 NA non-coding upstream 155447 16701068 ~ 16701671 (-)
LOC122342882 NA non-coding upstream 362588 16908209 ~ 16924965 (-)
G29127 NA non-coding upstream 409834 16955455 ~ 17026339 (-)
G28898 NA other downstream 612090 15932494 ~ 15932864 (-)
kiaa0930 zgc:172139,kiaa0930,LOC107601010,LOC107719873,LOC107687566,LOC107699202 other downstream 933379 15601440 ~ 15611575 (-)
LOC122342864 rpl34,LOC107566275,LOC107573163,LOC107681344 other downstream 1517291 15024587 ~ 15027663 (-)
LOC122342642 pfkfb3 other downstream 1734243 14808543 ~ 14810711 (-)
LOC122342862 celsr1a,LOC107666207,LOC107710744,LOC107569230,LOC107721151,LOC107600014,LOC107689740 other downstream 1840332 14687873 ~ 14704622 (-)
G29022 chrna2b,LOC107697311,LOC107589091,LOC107723144,LOC107746381,LOC107563692,LOC107701496 other upstream 162153 16707774 ~ 16708960 (-)
prkchb prkchb,LOC107743988,LOC107697294,LOC107701491,LOC107718442,LOC107589067,LOC107563690 other upstream 340532 16886153 ~ 16900295 (-)
G29135 NA other upstream 461306 17006927 ~ 17017823 (-)
xrcc3 xrcc3,LOC107755221,LOC107683971,LOC107560377 other upstream 572722 17118343 ~ 17122129 (-)
srd5a3 srd5a3,LOC107755245,LOC107683999,LOC107665336,LOC107601910 other upstream 1091402 17637023 ~ 17638742 (-)

Expression


Co-expression Network