LOC122342618


Basic Information

Item Value
gene id LOC122342618
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 9547639 ~ 9552161 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006250614.1
TTGGTTTTCAACTCCAAAACTTTCAACTTTGGTTGGCACCAAACCATCCTGTGAAGGACAGGAGATATGGGAAAAGGCAGATATGAGAAAGACCAGAATGTGGCGTCACGGACTCAGTCCTTCATGTTTTTGTAGATATCAGTATTTGGGACATTTCCAAGAGTGGCACAATGAGGGCTGAATGAAATAAGAGTTTAATCTTCACAACAATCTGTTCGGTTCTGCCTCCAGAGAACAGGCACTTCACACATCTGCATGAACATGCCCTTCAGGTTGGCTATAACAATGCCAGCCAGCACTGACTGTGAGACAGAGAGGGGTGAATATTCCTTGTCAGGAAGCAGGAAATGCCATAGGAAGTGCTCTTACCCCCTTGGGAGGCTGTGGACAATGCTGGCGCCGTACTGGGAGTTTAGGTCCATCCCATGAGAGACTGCAGAAGCTATCACTGTCTATCAGTTCGAAAGATTGAAAGGTTTTAACCTTTACCTGAAATAGTCCAACCAACACTGTCATGGTACAAGCCACCAGGATTCTCTGGGCCTCTCTTGCCTCTACATCAACCTCCATTAACCCTTTATCTGCCACCGTCTCATTCACACCTGTGAAGTT
>XR_006250615.1
CTGGTCTTTTTCAAAGGCTTGGTTTTCAACTCCAAAACTTTCAACTTTGGTTGGCACCAAACCATCCTGTGAAGGACAGGAGATATGGGAAAAGGCAGATATGAGAAAGACCAGAATGTGGCGTCACGGACTCAGTCTGTTCGGTTCTGCCTCCAGAGAACAGGCACTTCACACATCTGCATGAACATGCCCTTCAGGTTGGCTATAACAATGCCAGCCAGCACTGACTGTGAGACAGAGAGGGGTGAATATTCCTTGTCAGGAAGCAGGAAATGCCATAGGAAGTGCTCTTACCCCCTTGGGAGGCTGTGGACAATGCTGGCGCCGTACTGGGAGTTTAGGTCCATCCCATGAGAGACTGCAGAAGCTATCACTGTCTATCAGTTCGAAAGATTGAAAGGTTTTAACCTTTACCTGAAATAGTCCAACCAACACTGTCATGGTACAAGCCACCAGGATTCTCTGGGCCTCTCTTGCCTCTACATCAACCTCCATTAACCCTTTATCTGCCACCGTCTCATTCACACCTGTGAAGTT
>XR_006250616.1
ACCCTGGTCTTTTTCAAAGGCTTGGTTTTCAACTCCAAAACTTTCAACTTTGGTTGGCACCAAACCATCCTGTGAAGGACAGGAGATATGGGAAAAGGCAGATATGAGAAAGACCAGAATGTGGCGTCACGGACTCAGATATCAGTATTTGGGACATTTCCAAGAGTGGCACAATGAGGGCTGAATGAAATAAGAGTTTAATCTTCACAACAATCTGTTCGGTTCTGCCTCCAGAGAACAGGCACTTCACACATCTGCATGAACATGCCCTTCAGGTTGGCTATAACAATGCCAGCCAGCACTGACTGTGAGACAGAGAGGGGTGAATATTCCTTGTCAGGAAGCAGGAAATGCCATAGGAAGTGCTCTTACCCCCTTGGGAGGCTGTGGACAATGCTGGCGCCGTACTGGGAGTTTAGGTCCATCCCATGAGAGACTGCAGAAGCTATCACTGTCTATCAGTTCGAAAGATTGAAAGGTTTTAACCTTTACCTGAAATAGTCCAACCAACACTGTCATGGTACAAGCCACCAGGATTCTCTGGGCCTCTCTTGCCTCTACATCAACCTCCATTAACCCTTTATCTGCCACCGTCTCATTCACACCTGTGAAGTT
>XR_006250617.1
GTCTTTTTCAAAGGCTTGGTTTTCAACTCCAAAACTTTCAACTTTGGTTGGCACCAAACCATCCTGTGAAGGACAGGAGATATGGGAAAAGGCAGATATGAGAAAGACCAGAATGTGGCGTCACGGACTCAGAGAACAGGCACTTCACACATCTGCATGAACATGCCCTTCAGGTTGGCTATAACAATGCCAGCCAGCACTGACTGTGAGACAGAGAGGGGTGAATATTCCTTGTCAGGAAGCAGGAAATGCCATAGGAAGTGCTCTTACCCCCTTGGGAGGCTGTGGACAATGCTGGCGCCGTACTGGGAGTTTAGGTCCATCCCATGAGAGACTGCAGAAGCTATCACTGTCTATCAGTTCGAAAGATTGAAAGGTTTTAACCTTTACCTGAAATAGTCCAACCAACACTGTCATGGTACAAGCCACCAGGATTCTCTGGGCCTCTCTTGCCTCTACATCAACCTCCATTAACCCTTTATCTGCCACCGTCTCATTCACACCTGTGAAGTT
>XR_006250618.1
TTGGTTTTCAACTCCAAAACTTTCAACTTTGGTTGGCACCAAACCATCCTGTGAAGGACAGGAGATATGGGAAAAGGCAGATATGAGAAAGACCAGAATGTGGCGTCACGGACTCAGTCCTTCATGTTTTTGTAGATATCAGTATTTGGGACATTTCCAAGAGTGGCACAATGAGGGCTGAATGAAATAAGAGTTTAATCTTCACAACAAAGAACAGGCACTTCACACATCTGCATGAACATGCCCTTCAGGTTGGCTATAACAATGCCAGCCAGCACTGACTGTGAGACAGAGAGGGGTGAATATTCCTTGTCAGGAAGCAGGAAATGCCATAGGAAGTGCTCTTACCCCCTTGGGAGGCTGTGGACAATGCTGGCGCCGTACTGGGAGTTTAGGTCCATCCCATGAGAGACTGCAGAAGCTATCACTGTCTATCAGTTCGAAAGATTGAAAGGTTTTAACCTTTACCTGAAATAGTCCAACCAACACTGTCATGGTACAAGCCACCAGGATTCTCTGGGCCTCTCTTGCCTCTACATCAACCTCCATTAACCCTTTATCTGCCACCGTCTCATTCACACCTGTGAAGTT

Function

GO:

id name namespace
GO:0009651 response to salt stress biological_process
GO:0055081 anion homeostasis biological_process
GO:0055085 transmembrane transport biological_process
GO:0008272 sulfate transport biological_process
GO:0006821 chloride transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008271 secondary active sulfate transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006250614.1 False 612 lncRNA 0.46 5 9547639 9552140
XR_006250615.1 False 537 lncRNA 0.48 4 9547639 9552158
XR_006250616.1 True 615 lncRNA 0.47 5 9547639 9552161
XR_006250617.1 False 513 lncRNA 0.48 4 9547639 9552155
XR_006250618.1 False 591 lncRNA 0.46 5 9547639 9552140

Neighbor

gene id symbol gene type direction distance location
def6c LOC107695900,LOC107725651,LOC107590351,LOC107664889,LOC107732969 coding downstream 4132 9534425 ~ 9543507 (-)
atxn10 atxn10,LOC107695869,LOC107732963,LOC107725522,LOC107591266 coding downstream 16589 9523067 ~ 9531050 (-)
pparaa pparaa,LOC107695898,LOC107725614,LOC107732979,LOC107553885 coding downstream 70925 9461383 ~ 9476714 (-)
cdpf1 si:ch211-239e6.4,cdpf1,LOC107695897,LOC107732981,LOC107664868 coding downstream 86583 9458750 ~ 9461056 (-)
cdkn1ba LOC107732982,LOC107725668,LOC107590325,LOC107553888,LOC107664845 coding downstream 89145 9455683 ~ 9458494 (-)
cbll1 LOC107695901,LOC107725636,LOC107590361,LOC107733012 coding upstream 25133 9577294 ~ 9580814 (-)
mcat mcat,LOC107695903,LOC107591294,LOC107732994,LOC107725637,LOC107553884 coding upstream 31477 9583638 ~ 9586982 (-)
rap1b rap1b,LOC107695907 coding upstream 35835 9587996 ~ 9632618 (-)
prrt4b LOC107695904,LOC107725552,LOC107590384,LOC107664879,LOC107732996 coding upstream 102295 9654456 ~ 9674110 (-)
lepb lepb coding upstream 128025 9680186 ~ 9682387 (-)
G27532 NA non-coding downstream 2218 9545208 ~ 9545421 (-)
G27469 NA non-coding downstream 43639 9498716 ~ 9504000 (-)
LOC122343442 NA non-coding downstream 205900 9330007 ~ 9341739 (-)
G27425 NA non-coding downstream 523562 9023877 ~ 9024077 (-)
G27417 NA non-coding downstream 543416 9003923 ~ 9004223 (-)
G27540 LOC107732962,LOC107553866,LOC107725684,LOC107695899 non-coding upstream 13286 9565447 ~ 9568297 (-)
G27549 NA non-coding upstream 45296 9597457 ~ 9654377 (-)
G27581 NA non-coding upstream 145535 9697696 ~ 9744787 (-)
G27627 NA non-coding upstream 463021 10015182 ~ 10015754 (-)
G27628 lrrc4.1,LOC107557314,LOC107732976,LOC107699068,LOC107738809,LOC108432552 non-coding upstream 531258 10083419 ~ 10138056 (-)
uhrf1bp1l uhrf1bp1l,LOC107695888,LOC107744929,LOC107664877,LOC107589017 other downstream 247460 9271972 ~ 9300179 (-)
klhl42 klhl42 other downstream 538335 9004260 ~ 9009304 (-)
LOC122343470 LOC107593478,LOC107664836,LOC107744937,LOC108435459,LOC108279443 other downstream 606236 8892019 ~ 8941403 (-)
th2 pah,th2,LOC107590157,LOC107664872,LOC107587609,LOC107744916,LOC107695848,LOC108437952 other downstream 673041 8870215 ~ 8874598 (-)
slc25a3a slc25a3a,slc25a3,LOC107744906,LOC107586622,LOC108437945,LOC105897470,LOC108279629,LOC107694680,LOC107593070 other downstream 1030056 8513630 ~ 8517583 (-)
zgc:193726 NA other upstream 803550 10355711 ~ 10363566 (-)
cacna2d4a cacna2d4a,cacna2d4,LOC107694142,LOC107738821 other upstream 932761 10484922 ~ 10522249 (-)
dcp1b dcp1b,LOC107590561,LOC107738825,LOC107733007,LOC107589040,LOC107699046,LOC107694173 other upstream 972370 10524531 ~ 10533543 (-)
ppfia2 ppfia2,LOC107694182,LOC107755902,LOC107680027 other upstream 1862559 11414720 ~ 11573766 (-)
kmt2e kmt2e,LOC107590817,LOC107590964,LOC107710662 other upstream 2101309 11653470 ~ 11683862 (-)

Expression


Co-expression Network