LOC122342667


Basic Information

Item Value
gene id LOC122342667
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17090539 ~ 17119106 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006250625.1
TTGGACCTTTGCTGTTTGCTTTAAACAGACTTTGCTTCGGTCTTCTCTATATATTGCTAATGAGGACCTTCTGGATTTCCTGGATTTAAGAGACCACCAGCTGCGAAGGAAATGATAGACTGCTCCTTATCCCAGAAGGCCCTGTCCGACCACACCCCTTTTCGAACTGAATGCCTTACTGAAGGCCATGAGGATGGAGGGAACTGAGGAACTGGGACAAAGGAGGGGAGGTTGCAGCCCACCCGAGTGTCTGAAAGATTGAGTGTCCTTGCTCATTTTCCACCTACAAGCATTCTCACAACGCTTGGCTTCCTGTCACCATGGAGACGCCTCCTTGCCACAATGCCTCTGTCTCATTATGGATTCTTCCCAAATGTCCTGGAAGTGATGTCTGGTCTTGCCTGACAATATAATTCATCATGAAGAGGTGTGTGGCTGCAGCTCTGAATGGCCATCAGGGATCCCTCTCACTCCTTCTTCCCAAACTCCACACAGGCAGCTCGCTCGAGGGAGGTGTGGGGCGAAAACCACTTCTAATTTTCGAGG
>XR_006250626.1
GCTGCACCAAACAACAGTGTATTCAGCTGAGAGACTGAGGCTGGACAAGAACACACTGTATCGTTCAGCACTTAACCGCTTACAGGGTTGCTTTAAACTGGCTCAAGGGGGTTGTTTCGGAACTGCCATGAGGATGGAGGGAACTGAGGAACTGGGACAAAGGAGGGGAGGTTGCAGCCCACCCGAGTGTCTGAAAGATTGAGTGTCCTTGCTCATTTTCCACCTACAAGCATTCTCACAACGCTTGGCTTCCTGTCACCATGGAGACGCCTCCTTGCCACAATGCCTCTGTCTCATTATGGATTCTTCCCAAATGTCCTGGAAGTGATGTCTGGTCTTGCCTGACAATATAATTCATCATGAAGAGGTGTGTGGCTGCAGCTCTGAATGGCCATCAGGGATCCCTCTCACTCCTTCTTCCCAAACTCCACACAGGCAGCTCGCTCGAGGGAGGTGTGGGGCGAAAACCACTTCTAATTTTCGAGG

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006250625.1 True 546 lncRNA 0.50 5 17090539 17119106
XR_006250626.1 False 486 lncRNA 0.51 4 17093963 17119106

Neighbor

gene id symbol gene type direction distance location
ppp1r13bb LOC107560381,LOC107718410,LOC107755206 coding upstream 7419 17040857 ~ 17083120 (+)
rd3l rd3l,LOC107697292,LOC107560380,LOC107743985 coding upstream 53382 17033921 ~ 17037157 (+)
rtn1b rtn1b,LOC107560379,LOC107697289,LOC107701456,LOC107718426,LOC107743986,LOC107589072,LOC108434986,LOC108257846 coding upstream 64201 16999905 ~ 17026338 (+)
six1b six1b,six1,LOC107589069,LOC107563694,LOC107697302,LOC108434988 coding upstream 150852 16937799 ~ 16939687 (+)
six4b six4b,LOC107743978,LOC107589068,LOC107563693,LOC107697301,LOC107701468,LOC107718441 coding upstream 158333 16925017 ~ 16932206 (+)
brf1b brf1b,LOC107718407,LOC107683968,LOC107701485,LOC107755207,LOC107560373 coding downstream 3327 17122433 ~ 17176497 (+)
nudt14 nudt14,LOC107755236,LOC107718404,LOC107701483,LOC107683965 coding downstream 147351 17266457 ~ 17293636 (+)
jag2b jag2,jag2b,LOC107718403,LOC107755239,LOC107601898 coding downstream 189187 17308293 ~ 17348870 (+)
esr2a esr2,LOC107718402,LOC107701482,LOC107755240,LOC107683963 coding downstream 278029 17397135 ~ 17410852 (+)
LOC122342653 l3hypdh,LOC107684001 coding downstream 364327 17483433 ~ 17490295 (+)
G29089 NA non-coding upstream 4682 17046871 ~ 17085857 (+)
G29086 NA non-coding upstream 52319 17037273 ~ 17038220 (+)
G29078 NA non-coding upstream 149229 16941016 ~ 16941310 (+)
LOC122342883 NA non-coding upstream 179197 16897515 ~ 16911342 (+)
G29026 NA non-coding upstream 337950 16748718 ~ 16752589 (+)
G29178 NA non-coding downstream 100036 17219142 ~ 17219514 (+)
G29181 NA non-coding downstream 101151 17220257 ~ 17220616 (+)
G29192 NA non-coding downstream 175269 17294375 ~ 17294640 (+)
G29200 NA non-coding downstream 266183 17385289 ~ 17385680 (+)
G29272 NA non-coding downstream 434727 17553833 ~ 17554190 (+)
atp5mj NA other upstream 49709 17038419 ~ 17040830 (+)
G28982 NA other upstream 616158 16473898 ~ 16474381 (+)
G28899 NA other upstream 1104813 15985219 ~ 15985726 (+)
G28891 NA other upstream 1248684 15841372 ~ 15841855 (+)
cdkn1d LOC107699204,LOC107719868,LOC107562144,LOC107601015,LOC107758204,LOC107687563 other upstream 1435261 15565499 ~ 15655278 (+)
G29526 NA other downstream 1181309 18300415 ~ 18301189 (+)
G29545 NA other downstream 1317354 18436460 ~ 18461317 (+)
G29642 NA other downstream 1764073 18883179 ~ 18886402 (+)
G29814 LOC107660256 other downstream 2171114 19290220 ~ 19342911 (+)
G29835 NA other downstream 2612156 19731262 ~ 19786128 (+)

Expression


Co-expression Network