LOC122342677


Basic Information

Item Value
gene id LOC122342677
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 11794283 ~ 11820297 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006250628.1
GCAGCGCGCGCAACAAAACACATAAATTCATAAactaatttacaaatattaaacattttaacattattaagcGCGCTTGCCGAGTGACCGATGCCATCTCTGTTAAGGAACACACTCGTCGTTTCGCGGCAGCAAATCCTCACACAAATAGCCCTCGGAACGTCATCCCTGACCTGAAGCTGAAGGAATGAGAGAGTTGGACCTGCTCTGTGGTTTGAAGGGGATTTGAAGATGACGTGCAGCCAGGAAAATATTCAGTGTGACAACAGACCATATGTCCCAAGGTCAAACGAACCGTGGCCACACCTCACTGCTGACGATCCCGCATGGCTTGCAGAAAGAGCCTCGAAAATCATTACGCCATCACTCCTCAGCCTTTTAATATGCGAGCGCGACTGTAAAGTTAAAGCCGATAAATTAGGCCGGCGACCTCAGACCTTACAGTTGCTTGGAGAGCTGCTGGGAAAGCACAGCTGCTTTGACTGAGCATTTGCATCGGGTCTTCAGGGGTTACCACACCGCGGGCACACATTTACATGGCACATGAGGCTATTACAGCTTGCATGCAAAGTCTGTTACTGTCTGCCGCGGTTCTACGGTCCGGTGAGGACACGAGCTAGGTGGTGGGACGGCAACAATCACGCGTTTGTCGACACGATTAAGCTGAACACAACGTGCTATTTAGAGATGCACGTTTGTCAGTTCAGCTAATACGTCTGTCATTATCGACACTGACTTGTTTTACCGaaataatgcactttaaaatgcatttatcgccatttatattcattaacataaactaacaaGGAACAGTATGTCTGAAGCGTTTGTCAATCTACGCCATGCAAATTTCAGCGTTTACCAataagctgctttttttttaaatatttacatcagTGCGCCTTgaactaacataaaaaaaatagctaattgTAATGTATATTATTGTAACACGAATTGATAATATTAGCTAATGAGACCTCGTTTTGAAGtgtcatttaaagcatttgtaaaaGTAATCATGAATAATCGTTCATAAAAAGGTCAAACATAATAATGCGCACAGAGCGTATCTCAACAGTGGTGACGgataacaaatgtttctttatgttacaaataaatcattca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006250628.1 True 1128 lncRNA 0.42 3 11794283 11820297

Neighbor

gene id symbol gene type direction distance location
cd36 cd36,LOC107590984,LOC107680017,LOC107694198 coding downstream 1363 11785346 ~ 11792920 (-)
kdm7aa LOC107694190,LOC107590789,LOC107710674,LOC107590966,LOC107680036 coding downstream 83781 11691122 ~ 11710502 (-)
orc5 orc5 coding downstream 176794 11607310 ~ 11617489 (-)
golgb1 golgb1,LOC107694188,LOC107755883,LOC107590726,LOC107710669,LOC107590960 coding downstream 192261 11582762 ~ 11602022 (-)
hcls1 hcls1,LOC107755885,LOC107694186,LOC107710670,LOC107680042,LOC105023407,LOC103459100 coding downstream 211980 11575175 ~ 11582303 (-)
nup107 nup107,LOC107590859,LOC107710680,LOC107694200,LOC107680040 coding upstream 10460 11830757 ~ 11840052 (-)
LOC122343504 si:ch211-198g19.1,si:ch211-149p5.1,trhde,LOC107590972,LOC107556777,LOC107710683,LOC107556776 coding upstream 459344 12279641 ~ 12371170 (-)
LOC122343505 trhde,si:ch211-149p5.1,si:ch211-198g19.1,LOC107556776,LOC107666938,LOC107590972,LOC107710683,LOC107710667,LOC107669707 coding upstream 593489 12413786 ~ 12430886 (-)
usp6nl usp6nl,LOC107669711,LOC107710686,LOC107572286 coding upstream 672057 12492354 ~ 12536326 (-)
celf2 celf2,LOC106927059,LOC108233267,LOC101484207,LOC107092344 coding upstream 718760 12539057 ~ 12671471 (-)
G28029 NA non-coding downstream 105483 11685732 ~ 11688800 (-)
LOC122343274 NA non-coding downstream 145860 11618450 ~ 11648423 (-)
G27974 syt1a,LOC107590640,LOC107694178,LOC107734425 non-coding downstream 534800 11126502 ~ 11259483 (-)
LOC122342624 LOC107694146 non-coding downstream 861882 10930597 ~ 10932401 (-)
G27940 NA non-coding downstream 1073999 10714630 ~ 10720284 (-)
G28090 NA non-coding upstream 176716 11997013 ~ 11997303 (-)
G28086 NA non-coding upstream 198312 12018609 ~ 12019001 (-)
G28117 NA non-coding upstream 327835 12148132 ~ 12155251 (-)
LOC122342788 NA non-coding upstream 416348 12236645 ~ 12238137 (-)
G28130 NA non-coding upstream 445368 12265665 ~ 12268740 (-)
kmt2e kmt2e,LOC107590817,LOC107590964,LOC107710662 other downstream 110421 11653470 ~ 11683862 (-)
ppfia2 ppfia2,LOC107694182,LOC107755902,LOC107680027 other downstream 220517 11414720 ~ 11573766 (-)
dcp1b dcp1b,LOC107590561,LOC107738825,LOC107733007,LOC107589040,LOC107699046,LOC107694173 other downstream 1260740 10524531 ~ 10533543 (-)
cacna2d4a cacna2d4a,cacna2d4,LOC107694142,LOC107738821 other downstream 1272034 10484922 ~ 10522249 (-)
zgc:193726 NA other downstream 1430717 10355711 ~ 10363566 (-)
magi2a magi2a,LOC107680009,LOC107755877,LOC107591172,LOC107694149,LOC107590979 other upstream 21668 11841965 ~ 11996639 (-)
G28093 slc35e3,LOC107710682,LOC107556774,LOC107737854 other upstream 194334 12014631 ~ 12015767 (-)
cpm cpm,LOC107728505,LOC107710685,LOC107666948,LOC107669712 other upstream 645315 12465612 ~ 12489181 (-)
tmem110l tmem110l,LOC107597025,LOC107748459,LOC107675974,LOC107555827,LOC107666935 other upstream 1356664 13176961 ~ 13186890 (-)
tmcc3 tmcc3,LOC107689246,LOC107667715 other upstream 1496635 13316932 ~ 13361938 (-)

Expression


Co-expression Network