LOC122342705


Basic Information

Item Value
gene id LOC122342705
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 28380612 ~ 28385954 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006250633.1
ACGCTGGTTTAGCTGTGGACCGGCTGCAGGCGGTAAACGGCAGGGTTTAGTGGAGATCACATTACAATGCCGGGCTAAAACAGGAACGGGATGCTATAAGGAGCACCGGACCAGTTGGGATTGTACCAGTATGAACTCATATCTACTGCAGTCAAAAGCTACTGAGATTTTTGTCAGTGTGCGGCAGAAACAAAACTGGAGCTGCATTGTGTCTGTATTCTGAACGGGAACAGAGCCACCTTTGGAAGAAGTCCACTTATTTCTGAAGACGCACTGGCTTGTCGTCAACCTAAAAATCTGACAATGCAGAAAGTGTCAAGGTACGTGATTGCAAGACGAACACAGAAAGAGGCCCAACTCCTCCCTCGCAAAAACATGATGCAGCATCATAATTAGCACCTATCAATAAAGTGAGCGCCCACACGAAGAGAGCCAGACCGCGATTCAGATGCAGGCAGAGCAGCGTTTCTGAGCCGGAACCGTTCATTCATGCATGCGTTCACCTAATAAAGAGCAATAGATTAATGCGCtgaactaattaattaataaaaacacaaatcgTACGTCAACGCAAACAAACTGAGCGTTTAGAGCCTCTTTTAAGATCAAACATCACCATCCTCTTCCTCATAATCTTCATCTGCATTCACACAGGTGTTTGCTGGGAGGAACGCGGCGGACGCGCTGCGGGTCACGTCCCGCCTCTGCGTCACATTCTCCGGCGGCACGAGGGCGCGCACGCACGCCTCAGATTCTAACGAATTCCAAATGAATGAAGGTTATAGAGCAACCGTCAACATGAAAATGACAACCGACGACGGCCGTTAAGACAGCTAGTCGGCATAAAACGGCGGAAAACGCAGCCAAATCTAAGATTGAAACGCTCGGATATAGAAGTAAAGCCAATGCAACATTATGGAAGCATGTGGAAGATCAGCACTAAGAATGGCAGGATATGAGACagcgctctgtctctctctcaggcgAGGACGAGCCGGATAATGgcttatctctctctctctggaggtCACTGTGTACAGCGAGGCTCTTAAAGAGGTAAGCAGGGTAAACTCTGATTAGTATGGTAACGGCTGAGGCTCCACAGCTGACGTACAGGCCACAATCACGTGCATTCGTACACAGGCCTTTGCGTTCAGCTCAATGCACgatcataaaaacacacagagataAAAATAGGCTCGGCTGATAATAATAGCACACTGCCATTGGCCAATGCAGCATCACGACGCGGATGCTGCTTTCTTCTCTTCATCTCGCTCCCTCAGTTCTGGCTTTCAAAGTCATCGTTTGGGATGGTTTGCATGAAGCAGTGAGAtcaaatgcaatattaaaaagacaaaaaggtgggtttgatgttgtttttggcAATCCAGGCAAATgcattgctctctctctctctctctctctctctctctctctctctctctctctctctgtctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006250633.1 True 1461 lncRNA 0.48 4 28380612 28385954

Neighbor

gene id symbol gene type direction distance location
dhdh.2 zgc:101723,LOC107665090,LOC107712874 coding upstream 13134 28360946 ~ 28367478 (+)
dhdh.1 LOC107665437,LOC107668471,LOC107709394,LOC107553352 coding upstream 20370 28354430 ~ 28360242 (+)
LOC122342376 LOC107694127,LOC107717944,LOC107590657,LOC107752637,LOC107552269 coding upstream 179601 28197236 ~ 28201011 (+)
LOC122342444 krt1-19d,LOC107665143,LOC107666326,LOC107753925,LOC107563035 coding upstream 270565 28106617 ~ 28110047 (+)
krt91 krt91,cki,LOC107727715,LOC107563033,LOC107753907,LOC107666324,LOC107549866,LOC107753917 coding upstream 297642 28080859 ~ 28082970 (+)
LOC122343436 parp6,LOC107668484,LOC107665100,LOC106587213 coding downstream 1553 28387507 ~ 28410310 (+)
celf6 celf6,LOC106535005 coding downstream 35295 28421249 ~ 28537332 (+)
LOC122342381 LOC107665446,LOC107595396,LOC107713214,LOC107553351,LOC107753194,LOC107676404 coding downstream 207923 28593877 ~ 28594995 (+)
LOC122342385 LOC107749047,LOC107728228,LOC107574018,LOC107722090,LOC107685875,LOC107553362,LOC107569032,LOC107669894 coding downstream 584297 28970251 ~ 28993117 (+)
G31551 LOC107709388,LOC107595343,LOC107712845,LOC107668482,LOC107553360 non-coding upstream 4825 28372385 ~ 28375787 (+)
G31631 myo7aa,LOC107660700,LOC106612882,LOC106581013 non-coding upstream 110028 28270102 ~ 28270584 (+)
G31621 NA non-coding upstream 152311 28226400 ~ 28228301 (+)
G31603 NA non-coding upstream 218347 28144440 ~ 28162265 (+)
G31596 NA non-coding upstream 259453 28120252 ~ 28121159 (+)
G31653 NA non-coding downstream 135030 28520984 ~ 28541933 (+)
LOC122342517 NA non-coding downstream 182331 28568285 ~ 28593867 (+)
G31665 NA non-coding downstream 261023 28646977 ~ 28652833 (+)
LOC122343449 NA non-coding downstream 470177 28856131 ~ 28858515 (+)
G31845 NA non-coding downstream 611774 28997728 ~ 29002977 (+)
G31649 NA other upstream 27386 28350353 ~ 28353226 (+)
G31636 NA other upstream 59918 28285027 ~ 28320694 (+)
LOC122342379 myo7aa,myo7a,LOC107660700,LOC107735900,LOC107600840 other upstream 63030 28297302 ~ 28317582 (+)
G31619 capn5,capn5a,LOC107713096,LOC107600851,LOC107660684 other upstream 159195 28218733 ~ 28221417 (+)
G31614 capn5a,capn5,LOC107665347,LOC107660684,LOC107600851,LOC106535735 other upstream 164364 28206958 ~ 28216248 (+)
LOC122343276 LOC107561645,LOC107679413,LOC107569100,LOC107747810,LOC107734660,LOC107655025 other downstream 444681 28830635 ~ 28893627 (+)
LOC122342386 LOC107670352,LOC107565530,LOC107659779,LOC107747635,LOC107566978,LOC107561645,LOC107665206,LOC108183462,LOC107749046,LOC107574515,LOC107671223,LOC107663329,LOC107575399,LOC107576964,LOC107571858,LOC107575109,LOC107698614 other downstream 619811 29005765 ~ 29185529 (+)

Expression


Co-expression Network