LOC122342713


Basic Information

Item Value
gene id LOC122342713
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 9078018 ~ 9081866 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006250634.1
ttgtggatgatgatgaaagaaaataattaatgctATAAAATGGAGATGTGTTTACATGTTAATTAGTCTTTTTAGAAACCTAATCttattttatctctctctctttttgtcttgtGTGTGATGCCACCCCTCAGATGGCGTCTTTTGGATCCCAAAGCCCAGATATGGCAATGACGTGGGTCCTTCCACCGATTAAAGATCCATTTATGTCACGCTTGAGCATGTCTGGTGTGGCATGCTGCCCGTTTCGAGATCCCCCTGGCTCATCCAGCAATAACGACCATTTTGAAAGGCAGTGGAAGCTGATCTCTATATCATCACCCCTGAAATATTTATCCATCTGAAGTCGTAGCATCTCCACCAGGCCATCAGCATTGCATCATCCATCAGAAATGCCTCTGGCACCACAGTAAAGCTGGTCTCTATGACTTGAAACCCAGCGCCGGATCAACAGATTCCCCATCGGAATATATAATCTGTGGCGTAATGATGGACAATGTGGGTTCTCACCTTTCTTTGTGGGCTCAGGCATGTTGAGCCGTTCTCCGGTGGACCAGGC

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0048468 cell development biological_process
GO:0022607 cellular component assembly biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0030154 cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0006996 organelle organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0070925 organelle assembly biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0016043 cellular component organization biological_process

KEGG:

id description
ko03050 Proteasome

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006250634.1 True 559 lncRNA 0.45 3 9078018 9081866

Neighbor

gene id symbol gene type direction distance location
gnptab gnptab,LOC107695880,LOC107664853,LOC107725516,LOC107725515 coding upstream 36162 9024477 ~ 9041856 (+)
cwf19l1 cwf19l1,LOC107695878,LOC107725658,LOC107744920,LOC107664857 coding upstream 62762 9010162 ~ 9015256 (+)
itfg2 itfg2 coding upstream 107424 8962606 ~ 8970594 (+)
recql recql,LOC107695875,LOC107590167,LOC107725624,LOC107587911,LOC107744919,LOC107664885 coding upstream 116785 8953947 ~ 8961233 (+)
nup37 nup37,LOC107590136,LOC107695872,LOC107664874,LOC107744917 coding upstream 212100 8855404 ~ 8865918 (+)
LOC122343441 LOC107553872,LOC107593900 coding downstream 235714 9317580 ~ 9323622 (+)
LOC122343440 NA coding downstream 243034 9324900 ~ 9333048 (+)
ncaph2 ncaph2,LOC107725678,LOC107590292,LOC107732965,LOC107553878 coding downstream 274101 9355967 ~ 9373818 (+)
slc26a4 slc26a4,LOC107664887,LOC107695858,LOC107553866,LOC107733015 coding downstream 463819 9545685 ~ 9554560 (+)
slc26a3.2 LOC107695870,LOC107591024,LOC107725685,LOC107695899,LOC107725684,LOC107591277 coding downstream 474963 9556829 ~ 9576961 (+)
G27352 NA non-coding upstream 1882 9068931 ~ 9076136 (+)
G27347 LOC107590965,LOC107695883 non-coding upstream 19726 9057868 ~ 9058292 (+)
G27345 NA non-coding upstream 20721 9054021 ~ 9057297 (+)
G27301 NA non-coding upstream 124896 8952922 ~ 8953122 (+)
G27162 NA non-coding upstream 325169 8752438 ~ 8752849 (+)
LOC122343257 NA non-coding downstream 6889 9088755 ~ 9098978 (+)
LOC122343448 NA non-coding downstream 265361 9347227 ~ 9351206 (+)
G27397 NA non-coding downstream 274500 9356366 ~ 9356870 (+)
G27404 NA non-coding downstream 403427 9485293 ~ 9485655 (+)
G27405 NA non-coding downstream 405495 9487361 ~ 9487576 (+)
washc3 ccdc53,LOC107695862,LOC107590199,LOC107596601,LOC107744922,LOC107664856 other upstream 59685 9015841 ~ 9018333 (+)
ascl1a ascl1a,ascl1,LOC107590149,LOC107664850,LOC107596391,LOC107744950,LOC106576285 other upstream 187842 8874717 ~ 8890176 (+)
etnk1 etnk1,LOC107725541,LOC107659837,LOC107694683,LOC107590048,LOC107744908 other upstream 530016 8533816 ~ 8548002 (+)
spx spx,LOC107589995,LOC107744902,LOC107694690,LOC107596170,LOC107725633 other upstream 586080 8487911 ~ 8491938 (+)
stmp1 NA other upstream 594187 8482890 ~ 8483831 (+)
G27360 anks1b other downstream 81281 9163147 ~ 9227212 (+)
cfap54 cfap54,LOC107695893 other downstream 299676 9381542 ~ 9395757 (+)
wnt7ba wnt7ba,wnt7b,LOC107591249,LOC107695867,LOC107725526,LOC107732964,LOC107664847,LOC103028473 other downstream 422214 9504080 ~ 9522033 (+)
G27508 LOC107695901,LOC107725636,LOC107553882 other downstream 495449 9577315 ~ 9578574 (+)
G27490 NA other downstream 505453 9587319 ~ 9590318 (+)

Expression


Co-expression Network