LOC122342718


Basic Information

Item Value
gene id LOC122342718
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 5917504 ~ 5922916 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006250637.1
AcctgggaagaaaacacaacagttCGCGTCAATGTAGGTGGCAGGTTAGCAGTTCAGGTGACCTACCTTTCTTTGTAAGTGGGAGGAGCCTGTGAATCTCCAGCTGTGACAGGTAAGAAATTTTCCCAGGATTGAGTAGCATTTTATAACgtgaaactcaaaattgctGCCAATTATAAAACTAGTATCcacacttttaattattttcccaTCCTAATGTGTACCACAAATTATTCAACATATACAACAAAGATGTGCTTCTCTGGGTTacaaaatgcagtttgtttCTAGAAAATGTCAAGATCAATGCCAATATCTGGTGAGTACGGCATAGCCGAGACTGTAGAAACACTTTCTAGTGCGCTGGAATGTGTGCTGCACTAAAAGTGTAAGAAAAGCTTTCAGCTGGAACAATGCACGCCTTCAAGGGTTATAAAATCACCCTCTGGAAAAGTTCCctcagtctttttgtttttgtaaaccaTTTTACGATCCTGCTGTAAAGTTACTGCCCCTTAAAAAGCATCACACGGCAGTAACTTTACAGCAGAATTTAAACAAGTTAGATGACCTCAGATCCACCTCTGACCTGATTACATACAGTTTTTCATGCAATGCTAAAATATATGTTCTACATAAATGGCAGATATCTGAGAGAGTTGTCTGATAAAGAGAGATTACGTTTCTGTACAAATCTGGGCATATAATACATTTCCGCAGACTGGAAGGAGGTCAAGGGGCAGGTGTACATGGTCCACAGGCTGGGTGTAAAGCGACGGGTCAGTGTGTCGGTCAGTCTTAAGCGCAGGTTGCAGCTCGAGCACACAATGTGGTTTGGACAGCAGGACTGCAAAGGAGTGTGCTTGGGGTTATTTGGGGAGGAATGATTTTTGGAGGTTGACGGCAGGGCCAAAGCAGATCTTTTGGTGGCACTTCGCTCTCCTAGGCGGTCCAGGGATCTTCTCAACTCTTGCTGTGCACCTTGTACCCCAGCTAGCTCCCGCTGATACTGAACATCCAGCGCATGTAGGGTCCGCTCAAGCTGCAGGCTCTGACGCCTCTGAGCATTAGCCAGCGAACGCTCTaagaattacataaaatatcaaCCAAAAGATCTGAATAAACTAGCCCTTATTGGAAATTGAAAAGAATACAGTAAGTTagtgtacacatttttttacagatacCCCGTTCATTATGTCTTTTCCTTCTTGACAGAGAGATGAAATTAGACATGCCACACTCATCTGGAAGACATGAAGATATGCAGGATGCAGTGACAAATGCTGAACAGTTGAGAGATCATatgtttttaccttttatataaAGTGAATATTGTAACATTAAATTCACATCTTTCAGCAGGGGTGGTATATAGACAATaccacatttaattatttaaaattgtacataTGCAAATCACATACATCAGACACTAATTCTGGAAATTTTGTAAAGTtgttaagaaaataatacattaatgcatttactcACCCATGGATGGACAAGCATTTACTGTCTAGAAGCATCTTAATGTAAAAACCCACCAAGCTCATTTCTGTGAATACACAAACTTTTCCTCTCCTCTTCAGCCTAAAGATAGGGGGAAAATGCTTCTGAAAGTGAGAGTCTGTTAGGTAACCTAACTTTTATAAAGCGACACAGTCTCTTAAAACAATAGATTTGAAGGGGCCAAGTAAGAAAAGAGTGGGCAGAGCTAGTGAGAGAAAGGCAACTCCTCTTCAGCTTTACAAAAGAATGCAGAATATAAATCGGAAAAtctatattgcaaaaaaataaaataataataataataaatatatatatataatataaaatcataaatatagcATCAAAATCAGTGGTAAATGTGACAGCCTTTAAAATCAAAcacactgaataaaacaaaaaaaaaaaaaacattagccaGTTTTCATGCACTTCTTTAATATATCAGTTTTTCATATTCACAACAAATACATTAAGCTCTTTTCCTTTTATATAATACagtcttaaatatttttacacagaaatattttctcagaatttcatctatcaaaatgtcttttcttaACCTTTAAGTTGAAACATTTGAAgtcatttcattgtttttatctCCATGCCTCCTAGCAAACGGACAGTACTTCCTTTGTACAGCTATTTACAGATGAAAAGAGTCTCCCAAACATTTGTATGATAGTTCTCACTTGAATTAACTTGCACTGGGGGGGGAGGGTTAAAGTGCAGGCAAGGCAACAGAAAGGAATGTGATACGGACGTTTTTGTTGAAGgctttaaagcaaataaaatgggGGATTTGGGGAGTGAAAGAAAAAAGGCTATAGAgaatctatatatatgtgtgtttatctcCGAGTTGTAATTAAGCAGGTCACCAAGTATTCCAGTCAAGAAGGATCAATCCTTCACAAGTCAGACCTCTTCAGTAACATTCccatagaaaataaatacagcattctTAAAATACACCTCTACACCGTCTCCAGACGCAACCCACGTTAGGTTTGCCAGCTTAATCTGGTAACAAGTTCATTCAGACGTCTCGTCAAAAACTATACATGTGAAAACAGTGACCACCGTCACGAGCCCAAAGGATCCGTGGAGCTCCTCTCTCCTTAATGGCAAGTTTAAGTGGCGGAACCAATTCACAGAGCATCGTCCTTATAAAAATAATCGAAAAAGagaaccaaaataaataattcaatccATCTCAACAGAAGCAAGAAGATGGGGCACGTGTCCTCACTTTTGTAACAGAGCACGAGTGGCGAACCAAGCGGAGAGCCTCGGTTATCTGTGCAACATCAAGCATTTTGTGGAGCCGAAAGCAAAAATGCGTCATTTCCTAcgagaacaaaaaaaaggagCCGGAGCCACTTATTTCACTACGAAGAGGCCGAAATAACAAAAAGCATCCCTACGAGGGCACTTCCACTGTCCACAGTGTCTAGGTGAACTTCAGGGCTACACAGTGCTAGTGTCACTACAGCCCAAAGCTATGCTAGAGGGTTGACGCAGAAGTCTTTGGACCAACTTGAAACGAAGAGTCGCCGCTTTATCACCTGTTCGAGTCACAGGGCGAATCGATTTGGTCGAAGATCCAGATAACCGTTCTCCGGCAAATGGCGAAGGTGGACACAGATGGCGTTAGGAGGTTGAATTAAGCTTTGGTTTTTAGTGTCCCATGGCCCTGCCTGCTTTTGAAATcgattttcattcattttgcaatCCGGTAACCATGCTTTAACCTCTTcatatgacaaaatatattaagtctttaaaaaggcaaaattgCTTATCTGCATCAGTCATTTATACAAAGTGCACAGACACACTGCGTAATGTCCATTTCAGCAAATCACAGAATGAgtgagagaaaatatatatgtatatatacacacacacacacatacacacacacctctctgaGAGTTCGAAACACtgaacaaaaagtaaaacaattaaagcaatataaattaatgtaactTTGCAGGCCTGCCTGTCTATAACACAAGAAAAACTatatgaaacttaaaaaaaaaaaaaaaaatgctatgacCCGTGAACAAACATATCGGAATGAATCCAGCGGTGCAAGGTCCAAAGAGTTTTCACATGACTCGGATGGATCGaatctcaaaaaacaaaaaaacaaaacataaaaataaaaatctgttaacCGTTATGGCCTAAAAGGAATGGCTTCTAATAACAACAGTTAAGCTTAAAGTTGTAGTGAAAAGTACAGAAATACATCTGAAATACGCCCACATTGTTACTCCATAGCAAGGCTTCGTGTTTGCTTTATACAGTGGGTTTTTCTACAAgaaactttaaataatatagCCTTTGACTTATTCAGAAACATAATGCCAGCTACTATAAGGAGgtgaaactaaacaaaactaaatcacATTCTCTAGAAGCGCGGAAACCGCTTTGATTGTGCCGATCCAAGAGAGGCTAAAAACATTTCACCAGGCTTCTTTGCGTGGGACAcgtgaaatgcaaaataaataaaaatactagaGTTTGCTTTGACAAATAACTAAAAGCAAAAGAACCTACAGAATATTCtagaatatatatgtatatataaaaaaagaggtCTTTTGATGGTTGCTTCATTTACCACTTTTCACAAACTATATCTGTAACTGAAAAAAGGGTCTGTTTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006250637.1 True 4199 lncRNA 0.38 2 5917504 5922916

Neighbor

gene id symbol gene type direction distance location
LOC122342428 si:dkey-47k20.2,LOC107676311,LOC107569153,LOC107741377,LOC107697634,LOC107741381,LOC107557170,LOC107569155,LOC107569150,LOC107748086 coding upstream 36227 5877534 ~ 5881277 (+)
LOC122342429 si:dkey-47k20.1,LOC107569154,LOC107676314 coding upstream 41375 5872659 ~ 5876129 (+)
tnnt2c tnnt2c,LOC107560724,LOC107655611,LOC107725585 coding upstream 197250 5719009 ~ 5720254 (+)
cry1a cry1aa,LOC107560722,LOC107593424,LOC107655612,LOC107694298,LOC107757210 coding upstream 201884 5704481 ~ 5715620 (+)
mkln1 mkln1,LOC107754054,LOC107655615,LOC107757245,LOC107560731,LOC107587826,LOC107694304 coding upstream 377385 5521753 ~ 5540119 (+)
tmem178b tmem178b,LOC107725619,LOC107694293 coding downstream 18910 5941826 ~ 6015837 (+)
mkrn1 mkrn1,LOC107757257,LOC107549191,LOC107694290,LOC107725576,LOC107655605 coding downstream 121967 6044883 ~ 6054197 (+)
tmem121b cecr6,LOC107560714,LOC107725577,LOC107655606,LOC107694250,LOC107757258,LOC107590478 coding downstream 132242 6055158 ~ 6059544 (+)
lmo3 lmo3,LOC107550907,LOC107757261 coding downstream 270593 6193509 ~ 6234938 (+)
wif1 wif1,LOC107757271,LOC107725640,LOC107594874,LOC107587135 coding downstream 449142 6372058 ~ 6383263 (+)
LOC122342717 NA non-coding upstream 1257 5914217 ~ 5916247 (+)
G26422 NA non-coding upstream 3990 5909380 ~ 5913514 (+)
LOC122342716 NA non-coding upstream 4343 5904654 ~ 5913161 (+)
G26388 NA non-coding upstream 171010 5728205 ~ 5746494 (+)
G26517 LOC107655597,LOC107725654,LOC107757228,LOC107560265,LOC107587133 non-coding downstream 293925 6216841 ~ 6298080 (+)
G26585 grip1,LOC107587171,LOC107655593 non-coding downstream 476251 6399167 ~ 6404399 (+)
LOC122342579 NA non-coding downstream 1062327 6985243 ~ 7013661 (+)
LOC122343425 NA non-coding downstream 1134508 7057424 ~ 7061042 (+)
G26669 pus7l,LOC107591455 non-coding downstream 1160384 7083300 ~ 7088359 (+)
LOC122342837 grm4,LOC107549321,LOC107716363,LOC107708172,LOC107569297,LOC107666973,LOC107678149 other upstream 18677 5862607 ~ 5898827 (+)
LOC122342465 LOC107560737,LOC107742176,LOC107757234,LOC107690649,LOC107589816,LOC107694311,LOC107673148,LOC107559271,LOC107738440,LOC107670367,LOC556054,LOC108414180 other upstream 55191 5781944 ~ 5862313 (+)
pcloa pcloa,LOC107757237,LOC107694308,LOC107577557,LOC107560734 other upstream 519618 5354332 ~ 5397886 (+)
LOC122343397 LOC107580843,LOC107725884,LOC107658833,LOC107656293,LOC108428166 other upstream 972624 4929471 ~ 4944880 (+)
G25958 NA other upstream 1288605 4550163 ~ 4628899 (+)
vhll NA other downstream 465627 6388543 ~ 6390927 (+)
G26692 NA other downstream 1265024 7187940 ~ 7227437 (+)
akr1b1.1 akr1b1,LOC107725653,LOC107676909,LOC107587163,LOC107591878 other downstream 1491020 7413936 ~ 7463373 (+)
ube2h ube2h,LOC107676921,LOC107690610,LOC105888480 other downstream 1609996 7532912 ~ 7558489 (+)
col7a1l col7a1l,LOC107725642,LOC107744879,LOC107676908,LOC107555540,LOC107592433,LOC108435442 other downstream 2118516 8041432 ~ 8100749 (+)

Expression


Co-expression Network