LOC122342736


Basic Information

Item Value
gene id LOC122342736
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 8129161 ~ 8132328 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006250640.1
TACAACAAACagggatttcttttttttttgtttaaagttttaattagtCGGAGTAAGGTACGAGCGAGGAACCCACCTTCGAGCTGCTTTCTGTCCGTCGGCACGCTGCGGTTTCTCCTCCGCTCCACTAGGCGGCGCAGGCAGCCTTCACGTTCACACCAACACCTTTCTAAAGACAGTAGCAGCGATACATTTCTAACTTTTTGTCTTCATAAAAGTACACTTTCTGCAGATGACGGCTTAGCGACAGACTCGCAATGTAACCACACGTTTCATCCCGACGGCAAAAACAACCGACACGCGCCGTGAAGAAGAGAAGGAATCGACTCACCTGTGTTTTTAATTAAGGTTGGGGCTAAACTCTGGGAAGCAGCTCACCTGGaacatggaggaaaaaaaataattctcgcatggttttaatgcacattatatTCACAGGAGGGAGCTTATTGACACACGCTGATATGGTGTAATCCATGTGCCTTTACCTAAAACGTTGCCAACAACAGCTGCACCTTCAGTTTGTCATTTCATGAAGTTTTAGTATTTTCAGCGCTTCTTAATATCACCCATAGTACTGCAGCAATGGTacttgattattacgccggaatgaGTGTATAGCTCGTAACCATATGGTCCTAGAAAATAGCGGTTTTTCATTTTCCGTTTGGCACTAATATATGAAGTGAAACGGAATGCATTTCCCCATAGGCTCCACTAGGCGGAGCGATCGGGCTTCAGCTTCATTCTGACACCTTGACAACACGTGCAGACTGTTTTAATTACAAGCCCTGCAGATGACAGCTCCCTGACACAATCATGTAACTCAACAGCACTTATTCCAGCcatacacaaacaaatcagACGCACAGTAATAAAGTGACGGGATCATTTGTTACCAATGCCTTGTATTCTTGTAAATGTGAAGATTGCCATCCATTTTTTTACTCTTCTTTTTTGAAGTCACTATATTTACAATGCAAGTAAATCTacattatctaaaataaatagcatatactgtaaataaatatagattgcATCGTTACTGAATGCAGTTTCTATTTTTACAAGTGTCTGCATGTTCTTCATATGACATTTGTCTTTACATATAAAAGGTTAAACCTGCGAAATGTTTATTGCTTTGGTCTGCAATATGAATTATGCATATGGAGTTTGATTTGATCATCacagaattctttttttaaaaaggtgaaaTAGCTGCATGGGCTATTTTTGGTATGCTTCTGTATAAGAAAAATGTTGCATGTATTATTCAAATCTAAAATGCACCGAACATGAAGGAAAACATGGCCCTCGGGTTACGCTAAATATcaattttttattcttaaaaaccATACACGATACTCGacaagtttaaaatgtaagttaaatCACGATATCCATTTACATTGCGCAAGATAAACAGACATGTTCTTTTATTTCCAAactttaagataaaaaaaaaaaccttaaaacagATGGATAAACATTCATTCCCATTATAGGAAGACGCTatagaaaaaaagttatgtattcTTTTAATATATCTGCTCTAAATCGCAAActtaagcagttttttttatttaataaacatgaaaaacgAAATAACTtatccaaaaaaagaaaaaaaaaaatgtgcagttgCGATGACTGAAAAAATGCAAATCCCTTTCTcctgtttttcttcctttcttctcCTTTGTCACACCCTTAATGAACCAACGAGTGGAGAGAAGCAAGTCTGAACTGGAACCCTGctgccaaaataataattaaaaaaaaaaatctagtcctaaatattacaaaaaacacaaaacatgttaGAATTTTGACCATAAGTTTCATGCTATAAGCCACCCTGAGTAATATATTACTTGGAGAACCAATCACGACCCTTGTTTAAAGAGTGCCCGCCCCCCcatgaatataatttatgtaaaatcCCTGTAGGTCTGGTTCAGCAGGTTGAGATGTTGTCATTTCcgcataaaaatacaatttatatggTCTGTATCAAAACTTTCCTTGGGAATCTGAAATAAAGAACCCTGTGCTGCGATACCAGTGTTACACACGTTGTCTTTAAAATTCTTCATGTTGATTCCTTTGCGTTTCCAGTATTTCAGGtcttaaatatattctaaaaacaattgcagcaatattttttttaacggaCAGCAATTTTTATGGAATATGaaggaaaatatataatacaaactATCATTTTTCATAtgatcaacaaacaaaacacttgaggattttttttttcaaaaaaacaaaaaacaaaaaaacatgaaacaaattttgaaaacaatttactcattttcctccttttatttttccttttaactGAGACAGCAATTTACTACCTAAAAGACAATCTTAAGTTAAAATGCTTTACTCTTTAATCATTGCATCCTTTTCAATTCAGTCTGCtagttggtttgttttttttcagcctgAGTAAACAAACTTATGATACATTGGCAGGAACTTAATGTCTTGATGTCAATGAACTGACTGTGGACCATTTCAAACAGTTAAATAACAGATGCATTCATTCTTTAAAGGCGACCTGGACCTccacttcaaaaaaaacaaaaaaaaaacatcacacctTTTAAAGCGTGAAGACTCCAGCTCCAGCCATTTCAGATACTCCTTAACTTCCAAATGAGAATGAGACATGAAACTCggaacttaaaaataaaaccaaccaTGACTTTAAGGGGTGAAGTAGTAAGTATGAGAGGAGATTTATGGACAGAGATCCTCGTCTACGGCTCCCTCTCCTCGCCCattcaatgaaacaaaaaaaaacaaaacaaacaaaaaaaacctcccATGGACCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006250640.1 True 2852 lncRNA 0.36 2 8129161 8132328

Neighbor

gene id symbol gene type direction distance location
copg2 copg2,LOC107725548,LOC107676915,LOC107744880 coding upstream 16252 8103345 ~ 8112909 (+)
ucn3l ucn3l,LOC107725544,LOC107676913,LOC107595855,LOC107555541,LOC107744883,LOC107690866 coding upstream 26357 8101251 ~ 8102804 (+)
lrguk lrguk,LOC107690848,LOC107744931,LOC107725511,LOC107676907,LOC107555539 coding upstream 94232 8019911 ~ 8034929 (+)
exoc4 exoc4,LOC107555552,LOC107585070,LOC107676929,LOC107690838 coding upstream 109659 7917750 ~ 8019502 (+)
zc3hc1 zc3hc1,LOC107676937,LOC107587167,LOC107690584,LOC107584496 coding upstream 596594 7528337 ~ 7532567 (+)
si:dkeyp-38g8.5 si:dkeyp-38g8.5,LOC107595941,LOC107659854,LOC107744947,LOC107690729,LOC107725679 coding downstream 119756 8252084 ~ 8254845 (+)
pkp2 LOC107725677,LOC107659846,LOC107586091,LOC107694692,LOC107589947 coding downstream 328120 8460448 ~ 8474705 (+)
tcp11l2 tcp11l2,LOC107586172,LOC107589958,LOC107694691,LOC107659845,LOC107744901,LOC107725683 coding downstream 343378 8475706 ~ 8482653 (+)
golt1ba golt1ba,golt1b,LOC107725527,LOC107591215,LOC107586262,LOC107659829,LOC108437943 coding downstream 351645 8483973 ~ 8487631 (+)
kiss2 NA coding downstream 370538 8502866 ~ 8504047 (+)
G26994 NA non-coding upstream 3167 8125259 ~ 8125994 (+)
LOC122342735 NA non-coding upstream 5287 8115888 ~ 8123874 (+)
LOC122342925 NA non-coding upstream 492481 7590561 ~ 7636680 (+)
G26669 pus7l,LOC107591455 non-coding upstream 1040802 7083300 ~ 7088359 (+)
LOC122343425 NA non-coding upstream 1068119 7057424 ~ 7061042 (+)
G27066 NA non-coding downstream 43137 8175465 ~ 8175799 (+)
G27073 NA non-coding downstream 93130 8225458 ~ 8298999 (+)
G27084 NA non-coding downstream 146231 8278559 ~ 8331302 (+)
LOC122343529 NA non-coding downstream 242326 8374654 ~ 8377309 (+)
G27121 NA non-coding downstream 339347 8471675 ~ 8505096 (+)
col7a1l col7a1l,LOC107725642,LOC107744879,LOC107676908,LOC107555540,LOC107592433,LOC108435442 other upstream 28412 8041432 ~ 8100749 (+)
ube2h ube2h,LOC107676921,LOC107690610,LOC105888480 other upstream 570672 7532912 ~ 7558489 (+)
akr1b1.1 akr1b1,LOC107725653,LOC107676909,LOC107587163,LOC107591878 other upstream 665788 7413936 ~ 7463373 (+)
G26692 NA other upstream 901724 7187940 ~ 7227437 (+)
vhll NA other upstream 1738234 6388543 ~ 6390927 (+)
G26993 NA other downstream 5410 8137738 ~ 8138439 (+)
G27079 NA other downstream 115584 8247912 ~ 8249223 (+)
stmp1 NA other downstream 350562 8482890 ~ 8483831 (+)
spx spx,LOC107589995,LOC107744902,LOC107694690,LOC107596170,LOC107725633 other downstream 355583 8487911 ~ 8491938 (+)
etnk1 etnk1,LOC107725541,LOC107659837,LOC107694683,LOC107590048,LOC107744908 other downstream 401488 8533816 ~ 8548002 (+)

Expression


Co-expression Network