LOC122342795


Basic Information

Item Value
gene id LOC122342795
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 387195 ~ 388081 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006250652.1
CGCATGCACACGAGATGTTCACTCACAGATGCAATCATCTAGAGATGTACTTAAGAGCTACTGTGAGTGTTCAGTAAATAACTTCCTGTgagaaaatgtaagcatttaaTGTACGACAtctgaatacaaaaaaagctgtttttttttgttgttactttGGAGCTCAGCatcattttcaatttattaCGAAGGTAAGCAAATGgcacatttttacttttgaatgaatcattggGTCTAAAGGGACCATATATTTGATTTGAGAGCTATATTGAATTTTCAGTGAATGAATGCTTATGTTTTGCTTGTTTCTCACAGAATGAACAACATCAGAagaattctttttttcccatttcagTCTGAAATTGGATTTTAAACAACATGAGGGAGTTACTGACAAAATTTTCAGTTTTCCTAAATTGCTTCCAAGCCTTGGGAGTTTCCATTTACTTCATTACCTTATATTAGTGATGAAAGAAAGCTGAGAACAGATGGAAAGTTTATATACTACATCTGAATACACAATTGTTCTTGTGATTTTGGAGCTTAACCAGTTACTTTCTGATTCATGGACAAAAAAAGAATCAGTGAGAGCCACAAGTAAAAGTTAGGCTGACCCCCTAATTTCCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006250652.1 True 628 lncRNA 0.34 3 387195 388081

Neighbor

gene id symbol gene type direction distance location
zdhhc17 zdhhc17,LOC107708015,LOC107658960,LOC107656450 coding upstream 26273 343592 ~ 360922 (+)
LOC122343357 LOC107658963,LOC107708011,LOC107555883 coding upstream 174036 205505 ~ 213159 (+)
glipr1a NA coding upstream 187659 195092 ~ 199536 (+)
frs2a frs2,frs2a,LOC107658966,LOC107590545,LOC107729158 coding upstream 279890 90208 ~ 107305 (+)
yeats4 yeats4,LOC107555875,LOC107590554,LOC106609801,LOC107717680 coding upstream 298043 87004 ~ 89152 (+)
LOC122342832 NA coding downstream 472515 860596 ~ 863551 (+)
LOC122342829 LOC107705336,LOC107583937,LOC107656238 coding downstream 479115 867196 ~ 888759 (+)
fgd4b LOC107658950,LOC107705337,LOC107656390,LOC107590534,LOC107584024 coding downstream 502616 890697 ~ 908324 (+)
nampt1 nampt,nampta,LOC107658946,LOC107705339,LOC107656408,LOC107718548,LOC102790888 coding downstream 529501 917582 ~ 931678 (+)
sypl1 sypl1,LOC107590538,LOC107658778,LOC107583939,LOC107656429,LOC107718552 coding downstream 545965 934046 ~ 937823 (+)
G24638 e2f7,LOC107658780,LOC107707966,LOC107576736,LOC107576735,LOC107656240 non-coding upstream 4017 380551 ~ 383178 (+)
G24635 e2f7,LOC107656240,LOC107707966,LOC107658780 non-coding upstream 7751 379203 ~ 379444 (+)
G24634 NA non-coding upstream 10987 375925 ~ 376208 (+)
G24633 NA non-coding upstream 12351 374558 ~ 374844 (+)
G24631 NA non-coding upstream 14342 372374 ~ 372853 (+)
G24687 NA non-coding downstream 192028 580109 ~ 580350 (+)
G24746 NA non-coding downstream 219206 607287 ~ 607514 (+)
G24751 NA non-coding downstream 227519 615600 ~ 615856 (+)
G24754 NA non-coding downstream 231396 619477 ~ 619696 (+)
G24758 NA non-coding downstream 235170 623251 ~ 625225 (+)
G24632 LOC107584022 other upstream 13113 373527 ~ 374082 (+)
G24609 NA other upstream 92126 293235 ~ 295069 (+)
cmah cmah,LOC107555874,LOC107729160,LOC107656456,LOC107590555 other upstream 193012 184716 ~ 194183 (+)
G24555 cpsf6 other upstream 302233 83688 ~ 84962 (+)
gpr22a gpr22a,LOC107658958,LOC107583929,LOC107729153,LOC107708019,LOC107590528,LOC107656448 other downstream 46262 434343 ~ 439352 (+)
G24771 plekha5,LOC107584023,LOC107658747 other downstream 266011 654092 ~ 665530 (+)
LOC122342481 LOC107584054,LOC107658775,LOC107725972,LOC107711476,LOC107581286,LOC107656415,LOC107725915 other downstream 857497 1245578 ~ 1249169 (+)
ndufa5 ndufa5,LOC107725958,LOC107658774,LOC107579922 other downstream 900216 1288297 ~ 1291224 (+)
LOC122342419 coa6,LOC107726010,LOC107583951,LOC107658937 other downstream 941371 1329452 ~ 1331843 (+)

Expression


Co-expression Network