LOC122342883


Basic Information

Item Value
gene id LOC122342883
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 16897515 ~ 16911342 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006250658.1
tTAGCACGAcgacatatttaaataataataataataagtaattttttaaataaaaaagcaccaTACTATTGACTGAGCTGCTGACACATTTAggtaaatggaaatgtttttagaGTGAAGGATGTGGCTACTATATGATGTGGTTACAACTTAATAAACaacagcataaaataaaatggcgtGAGCTCTTATTAAGAGTGAAAGCTTATTTGGCCTAATGTATAACACAACATATTACAACATCCATATTTAACTGCATATAATAGAATCGTATCTCTAGCTCATCACACTAACCTTCTAGCACAGTCTCTTAGTCATTCTATCTTACCATCTAAGTCATTCTCTCAGTTATTATCATTTAGCTGGCCCTGCCATGTGGGAGGAATTCCTGTAACACGAGGCAAGACAAGGAAAGCAGGACGAGCTGGTTCAGGGAGTCAAGTCCACAGCACGCACCACCAAACACAACAAGCACTTCAGGGATCGGAAGGTGCAAGCATTGACCCAACCACCTCAacagtatataaaaatcaaCCTAGCATCTGATTaaactcttttttaaaaacatacatataaaacacactATAGGTTGCTCTGAACCCGTACGTGATATGGATGTGGACATCCTAACAAGATGTCAGTTTACATTCTGATAACTACTGCAAGTAACACACGTGGATGTACAACACAGGAGAGGTTATAAGGGGCAACAAGAGGAATCCAGCTAGTTTGGTCGAGCAGCATGTCTGCACTGGAGCGTGGGCCAGCAGGTTCAGGAAATCTCTCGGAAAGCCATGAGTATTAGTATCCAGGCCTCGACCGGATGCCCCAAAGCTCAGGGTTCAAGCTTCATCCCGTTCTTCCCTCTCCCAGAGCTGAGGACGGGGGAAAGGAAAGAgcatttcttttgcatttatatatattttttttaaattcactttgTTTGCTGTTATTGATACCATACacgtatttttatatttacacagcAATCCCCACTCTACCCTCATAAACTACGTATCATCCATGAGCCTTAAGCTTTCACAACACAGCACAGCGTCCCTCAGGGATGTTTTACTCCAGGTCTCGGCAAAGGCCAGCTGTCACTGTAAACTGAGCCGGGTGGACCCTCACGAACAGCTCAGCCTCTGCCCAGCTGCCGCCTTGGGATCTTATCAGCCACGGGACCATGCAACACAGACAATCTGGACCTGGTTTGTGTTTCAAGGCCATTCAAAATGACCTAAATGACATCAATAACACACTTGTGGTGGAAACGGGTCAAAAAAACGTAGACTTGTGTGTTGAAAACCaatgaatatttgcatttttaaaaactaaccTGTGACATATGAAGTATCTTtagaaatgagaaaattaaAGTTTAAGTTAAAGTAAAATTATCAATTTTAGTAATAGAAGGAGTGagaaaaaattatagaaaaaaCTTTATAGTGTTTCTTAGATTAGATGTAACTTAAAATGCAGTTATGCATTGGTTCAACAATCCTAAGCAACAACATGAACGCAACTCACAAGGACATTTCTtcaaatttctttcaaaacttcCTTATATGACTATTTAAATTTGGTCCCCAATGGCAGTGCACATAGACAATAACACAAATAAGatctataaatatttcattttccagaAACACTCACTTTCCATTAACACTTAGatgctttttttctattaatgATAAGAATgaaaattatgctaaaaattgcaatattaggatgagtaaatgatagcatttaaactgagaaaatgatGAATGTTCATCAttccctttaaaatattttaatctatGAACACAGCAACGTATTTCCTTGGATATGATTATTTGAGCTTACAGAACCAAGAGAGGACACAAAAAGGAATCATTGTTAGGTCCAGACATTTCTGGTATTTCTGATTGCACTAAACGACAGCAATGTTCTGATGTGAAATCAAATGTTTGAAACTGATTGACGTACAGGTCTTCATCCCGGCAATGGAATTCATGACACACCAGCACCTCAGACAGCAGCCTCTTAATTAGAACAAATGCCTTCCCTCCAGGCTTTCTTGCAATAACAGTGGGACTGTAATTAAACTCAATTAGCTCATCAGCTTTAAAGTGGGTTAAGTGATGTTTACTCAACATGGGCTAATTGTGTGGCATATGGTAAGCTTGGTAGATGGAAGTGTAGGGGTGGGTTTGTTGTTGGATAGCTTGGGATAGGTCTGCAGTAAAGCTATCAGGGATTACCTGGGCTGATGGTGGTGGTCCTGACGGCCCCCGAGGGGACGTGAGGGTTGAGAACTCAGAATCTGAGGGGGGGGCTTGAAGAACTCTTCCTTTTGGGAGAGCTCTAAAAAtgtcaagagagagagaaatatacaATGCTAACAATAACTagttcataaatatttttagaatatttacagtgataaagtatataaaacatttatacaaaaaactaaaataaactatttttaggatatactatataaattaaacataaagtTCTAtgtaacaaacacaaatatagaTCAGATTAAGCTCTCTAATGGCATCACTGGTAAACGGACCGATGTTAAACAATGCATTTCAGTGTCACTGTGGTTGGTTAAGAGTAGCAGGGTTGCTCTTTTTCTGTCCAGGGAACAGTGACAGCTGTGGGGCCAACAGTGGGTCCGAGCTCCCCTGCAGCTGTCTGGTGTGCCTGGGGTGGAATGACTCAGTGATCCTCCTCTAACTGGACAGATCCGGACCAGCACAACACCTGCTCTTTCTGGCAGAGCACAGGCAGGCCAACCTTGACTGACGTGAGGGAAttctaaaacacacagatatactGCCAGAGGACACTAAACACATATGAAGGAATACACCGGTGTATATGGAGATGCTTCCATGAAGAGCTTCAAGGCTATTTCCAGCTCAACGCGGGCGGCTGTCCTTCCTGGTTTGATCCCCTAGGCAACCGATGTGGTCATTCCTTCCAGAAAATGGAGAGCAGTGTGTAACCAAACACCAACAGGGGCCCCAGAAaaactagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaggtgtacATTATGCTTGAA
>XR_006250659.1
tTAGCACGAcgacatatttaaataataataataataagtaattttttaaataaaaaagcaccaTACTATTGACTGAGCTGCTGACACATTTAggtaaatggaaatgtttttagaGTGAAGGATGTGGCTACTATATGATGTGGTTACAACTTAATAAACaacagcataaaataaaatggcgtGAGCTCTTATTAAGAGTGAAAGCTTATTTGGCCTAATGTATAACACAACATATTACAACATCCATATTTAACTGCATATAATAGAATCGTATCTCTAGCTCATCACACTAACCTTCTAGCACAGTCTCTTAGTCATTCTATCTTACCATCTAAGTCATTCTCTCAGTTATTATCATTTAGCTGGCCCTGCCATGTGGGAGGAATTCCTGTAACACGAGGCAAGACAAGGAAAGCAGGACGAGCTGGTTCAGGGAGTCAAGTCCACAGCACGCACCACCAAACACAACAAGCACTTCAGGGATCGGAAGGTGCAAGCATTGACCCAACCACCTCAacagtatataaaaatcaaCCTAGCATCTGATTaaactcttttttaaaaacatacatataaaacacactATAGGTTGCTCTGAACCCGTACGTGATATGGATGTGGACATCCTAACAAGATGTCAGTTTACATTCTGATAACTACTGCAAGTAACACACGTGGATGTACAACACAGGAGAGGTTATAAGGGGCAACAAGAGGAATCCAGCTAGTTTGGTCGAGCAGCATGTCTGCACTGGAGCGTGGGCCAGCAGGTTCAGGAAATCTCTCGGAAAGCCATGAGTATTAGTATCCAGGCCTCGACCGGATGCCCCAAAGCTCAGGGTTCAAGCTTCATCCCGTTCTTCCCTCTCCCAGAGCTGAGGACGGGGGAAAGGAAAGAgcatttcttttgcatttatatatattttttttaaattcactttgTTTGCTGTTATTGATACCATACacgtatttttatatttacacagcAATCCCCACTCTACCCTCATAAACTACGTATCATCCATGAGCCTTAAGCTTTCACAACACAGCACAGCGTCCCTCAGGGATGTTTTACTCCAGGTCTCGGCAAAGGCCAGCTGTCACTGTAAACTGAGCCGGGTGGACCCTCACGAACAGCTCAGCCTCTGCCCAGCTGCCGCCTTGGGATCTTATCAGCCACGGGACCATGCAACACAGACAATCTGGACCTGGGAACAGTGACAGCTGTGGGGCCAACAGTGGGTCCGAGCTCCCCTGCAGCTGTCTGGTGTGCCTGGGGTGGAATGACTCAGTGATCCTCCTCTAACTGGACAGATCCGGACCAGCACAACACCTGCTCTTTCTGGCAGAGCACAGGCAGGCCAACCTTGACTGACGTGAGGGAAttctaaaacacacagatatactGCCAGAGGACACTAAACACATATGAAGGAATACACCGGTGTATATGGAGATGCTTCCATGAAGAGCTTCAAGGCTATTTCCAGCTCAACGCGGGCGGCTGTCCTTCCTGGTTTGATCCCCTAGGCAACCGATGTGGTCATTCCTTCCAGAAAATGGAGAGCAGTGTGTAACCAAACACCAACAGGGGCCCCAGAAaaactagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaggtgtacATTATGCTTGAA

Function

GO:

id name namespace
GO:0044459 obsolete plasma membrane part cellular_component
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098797 plasma membrane protein complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006250658.1 True 3100 lncRNA 0.40 5 16897515 16911342
XR_006250659.1 False 1664 lncRNA 0.45 6 16897515 16911342

Neighbor

gene id symbol gene type direction distance location
rhoj rhoj,LOC107697308,LOC107743974,LOC107701469,LOC107707080,LOC108257930 coding upstream 59091 16822113 ~ 16838424 (+)
chrna2b chrna2b,LOC107697311,LOC107589091,LOC107723144,LOC107746381,LOC107563692,LOC107701496,LOC108434998 coding upstream 187359 16701043 ~ 16710156 (+)
LOC122342226 NA coding upstream 280297 16615345 ~ 16617218 (+)
ptprb LOC107709971,LOC107685369,LOC107738449,LOC107575178,LOC107562139 coding upstream 440218 16436391 ~ 16457297 (+)
LOC122342594 LOC107709965,LOC107554744,LOC107700908,LOC107675140,LOC107569318,LOC107757199 coding upstream 470329 16398632 ~ 16427186 (+)
six4b six4b,LOC107743978,LOC107589068,LOC107563693,LOC107697301,LOC107701468,LOC107718441 coding downstream 13675 16925017 ~ 16932206 (+)
six1b six1b,six1,LOC107589069,LOC107563694,LOC107697302,LOC108434988 coding downstream 26457 16937799 ~ 16939687 (+)
rtn1b rtn1b,LOC107560379,LOC107697289,LOC107701456,LOC107718426,LOC107743986,LOC107589072,LOC108434986,LOC108257846 coding downstream 88563 16999905 ~ 17026338 (+)
rd3l rd3l,LOC107697292,LOC107560380,LOC107743985 coding downstream 122579 17033921 ~ 17037157 (+)
ppp1r13bb LOC107560381,LOC107718410,LOC107755206 coding downstream 129515 17040857 ~ 17083120 (+)
G29026 NA non-coding upstream 144926 16748718 ~ 16752589 (+)
LOC122343214 LOC107589090,LOC107723504,LOC107697312,LOC107563691,LOC107746370,LOC107701470 non-coding upstream 197297 16698521 ~ 16700218 (+)
G29011 NA non-coding upstream 287511 16609724 ~ 16610004 (+)
G28991 NA non-coding upstream 357355 16519411 ~ 16540160 (+)
G28985 NA non-coding upstream 422182 16474743 ~ 16475333 (+)
G29078 NA non-coding downstream 29674 16941016 ~ 16941310 (+)
G29086 NA non-coding downstream 125931 17037273 ~ 17038220 (+)
G29089 NA non-coding downstream 135529 17046871 ~ 17085857 (+)
LOC122342667 NA non-coding downstream 179197 17090539 ~ 17119106 (+)
G29178 NA non-coding downstream 307800 17219142 ~ 17219514 (+)
G28982 NA other upstream 423134 16473898 ~ 16474381 (+)
G28899 NA other upstream 911789 15985219 ~ 15985726 (+)
G28891 NA other upstream 1055660 15841372 ~ 15841855 (+)
cdkn1d LOC107699204,LOC107719868,LOC107562144,LOC107601015,LOC107758204,LOC107687563 other upstream 1242237 15565499 ~ 15655278 (+)
G28806 LOC107744205,LOC107601002,LOC107687568,LOC107699198 other upstream 1341833 15439334 ~ 15555682 (+)
atp5mj NA other downstream 127077 17038419 ~ 17040830 (+)
G29526 NA other downstream 1389073 18300415 ~ 18301189 (+)
G29545 NA other downstream 1525118 18436460 ~ 18461317 (+)
G29642 NA other downstream 1971837 18883179 ~ 18886402 (+)
G29814 LOC107660256 other downstream 2378878 19290220 ~ 19342911 (+)

Expression


Co-expression Network