LOC122343157 (tatdn1)



Basic Information


Item Value
gene id LOC122343157
gene name tatdn1
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17732403 ~ 17733334 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XR_006250673.1
CGTGAGGCCCCGCCCACTCCACCACGTGTTCGCTCTGTTTATGGACGCGGTGAGAAGCGCGTGCAGGTTTTATTCTTCCTGCGCCTCAATCATCAGGATGAGCAACTTCAGATTCATAGATATTGGCATTAATCTGACAGACCCGATGTTCAGAGGAGTTTACAGAGGAACTCAGAAACATGAAGatgaTTTTCCTCAGGTGCTGGAGAGAGCGCTAAAGGTCGGCGTGGAGAAGTTCATCATCACTGGAGGAAACTTGGAGGAGAGCAGAGCCGCCCTCACACTCGCACAGACACGAggtacacactca

Function


symbol description
tatdn1 Enables deoxyribonuclease I activity. Acts upstream of or within DNA replication and retina layer formation. Predicted to be located in nucleus. Is expressed in alar plate midbrain region; brain; optic vesicle; and retina. Orthologous to human TATDN1 (TatD DNase domain containing 1).

NR:

description
PREDICTED: putative deoxyribonuclease TATDN1 isoform X4

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XR_006250673.1 True 310 lncRNA 0.52 4 17732403 17733334

Neighbor


gene id symbol gene type direction distance location
LOC122343038 LOC107698808,LOC107743352 coding downstream 1006 17728522 ~ 17731397 (-)
LOC122342227 NA coding downstream 5607 17720148 ~ 17726796 (-)
LOC122343057 NA coding downstream 12613 17717764 ~ 17719790 (-)
LOC122343083 NA coding downstream 15352 17713746 ~ 17717051 (-)
LOC122343120 LOC107746441,LOC107599206,LOC107661202 coding downstream 18880 17711195 ~ 17713523 (-)
ckap2l NA coding upstream 106730 17840064 ~ 17851149 (-)
LOC122342984 LOC100150651,LOC107755845,LOC107668749,LOC107599606 coding upstream 121367 17854701 ~ 17880796 (-)
dqx1 dqx1,LOC107597950 coding upstream 151385 17884719 ~ 17898867 (-)
thnsl2 thnsl2,LOC107597948,LOC107578849,LOC107735618 coding upstream 170242 17903576 ~ 17912432 (-)
smyd1a smyd1,LOC107745315,LOC107597934 coding upstream 182237 17915571 ~ 17926697 (-)
G29408 LOC107755246,LOC107683958,LOC107718397 non-coding downstream 31030 17699424 ~ 17701373 (-)
G29388 NA non-coding downstream 89766 17642379 ~ 17642637 (-)
G29273 NA non-coding downstream 178439 17553762 ~ 17553964 (-)
G29212 NA non-coding downstream 382897 17349289 ~ 17349506 (-)
G29179 NA non-coding downstream 512950 17219151 ~ 17219453 (-)
G29420 NA non-coding upstream 16477 17749811 ~ 17814034 (-)
G29425 NA non-coding upstream 62738 17796072 ~ 17805409 (-)
G29440 NA non-coding upstream 84228 17817562 ~ 17817933 (-)
G29442 LOC107599601 non-coding upstream 86026 17819360 ~ 17822470 (-)
G29445 NA non-coding upstream 89885 17823219 ~ 17824264 (-)
srd5a3 srd5a3,LOC107755245,LOC107683999,LOC107665336,LOC107601910 other downstream 93661 17637023 ~ 17638742 (-)
xrcc3 xrcc3,LOC107755221,LOC107683971,LOC107560377 other downstream 610274 17118343 ~ 17122129 (-)
G29135 NA other downstream 714580 17006927 ~ 17017823 (-)
prkchb prkchb,LOC107743988,LOC107697294,LOC107701491,LOC107718442,LOC107589067,LOC107563690 other downstream 832108 16886153 ~ 16900295 (-)
G29022 chrna2b,LOC107697311,LOC107589091,LOC107723144,LOC107746381,LOC107563692,LOC107701496 other downstream 1023443 16707774 ~ 16708960 (-)
LOC122342228 scgn,LOC107693759,LOC107757885,LOC107669120,LOC107714763,LOC107747999,LOC107663245 other upstream 1272 17734606 ~ 17744543 (-)
G29417 NA other upstream 2016 17735350 ~ 17736274 (-)
G29473 NA other upstream 237271 17970605 ~ 17979922 (-)
G29653 LOC107663329,LOC107575399,LOC107749046,LOC107758217,LOC107576964,LOC107665206,LOC107571858,LOC107671223,LOC107576424 other upstream 675226 18408560 ~ 18428343 (-)
LOC122343054 NA other upstream 921910 18655244 ~ 18661653 (-)

Expression



Co-expression Network