LOC122343161 (LOC107743936,LOC101883431)


Basic Information

Item Value
gene id LOC122343161
gene name LOC107743936,LOC101883431
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24445529 ~ 24448290 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006250677.1
aaaaagtgcTACACCCACAAAGTaggttttaaatactttaaatagttttaatctagtttattttatttgttttatactaaaACGTATTAATATACTTTctctttacttaaaatatatcagtttttatataacaatatattttaagtaaagctattgcaatttatttggGTAGTTATTTGTATATGGTTGTTGTGTACaagaaatgttataaaagtGAGTTGACATACACAATTTATTAGAGCAGTTGTCGGTGTGACAGGTTTGTTCATCaaacgtaaatattttaaaatttttagtaGTTGGCATTATCCATTTTTCACTGGCGGGGACTTGCCCAGGCAGATGCAGCATCTTCGACACTTCAACTGTTTGAACGCTGCAGCGGATCTTTTCAGGGACTGATTAACACGATACCCAAGCACTTTTGTTACCTGAGGGTCTTCAAGCTTCATATTCAGAGTCATGATGAAAGCGAGGTGCAGGCTGAGCTTGGCAGTTGCCCACTGAAAATTTACATGTGCCATCATCCCGACACAATTGGAATTATCATAGAAGGAAAGCCCGTGGTCAGAGGTGTGCCAAACCTGTCGAAAGCATGCTGCCTCTTGTTTGGACTTACATATGCCCTCGACCTCAAGTATCCCCCAAAGTTGGTGTACACATTCGAGATATATCAGAGGCTGTTTGTGGGATTGGACCCCATGCGTCCTAAGCCATCATCCAAGTATACCAATCTCCTCATTAAGTTATCTTAGATGTTTTCTCAATGACATCTGACATTGTTTGCCATCATTTAACAAGTCTCTGAATTTTACaagtattttgatttaaaatacaaaaatcttacagattttcttttttcgtttgttttttggCTATTTCACTTAACTGTTCAGAACAGGTTGAAATTACACTTacacaatgtttgttttatattattgtgtacATGTGCAGCCACATTAATGGCCTGTTTTGTAGTCACTGCTAAATGTGACACTGGTTGACACTGAATAAATGTTGTCTTCAGTCTATCctatctttttcttcttcaattgattttgtaattgttattgACAGTCTGTTTATATAAAGTTAATCACTGTAGGGTttagaatataaacatttaaatttcttttctgAGGGTATAGTCAGgactcaattaaaatgtttattcaaatatgattagattaattttactaaaaacataaagttcataaaacctaattaaaatgAGTACAGGTTGCTTGTAGCAACCCATAAATAAGTTACCTGTACCAAGAAAAGTAGGTTTATCTAAGTAATACTAGTACTATTAGTTACCTCAACttgattttgttgcatttgtattaagtaatgttactgtgtttattatacttaaaaaagaCTGCAAGTTGACTCAACTTAAAACATCCAATGCAGCCACTTGCCTCACTTTTTATAAGTTAGATCTAGgtattacttttt

Function

NR:

description
PREDICTED: uncharacterized protein LOC107743936

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006250677.1 True 1464 lncRNA 0.33 3 24445529 24448290

Neighbor

gene id symbol gene type direction distance location
LOC122342338 NA coding downstream 126417 24312842 ~ 24319112 (-)
LOC122343156 LOC107674852,LOC105007321,LOC107551422,LOC103361099,LOC107732279,LOC107677819,LOC107725800 coding downstream 178922 24265349 ~ 24266607 (-)
LOC122342994 LOC107749047,LOC107685875,LOC107728228,LOC107570416,LOC107671223 coding downstream 225521 24207655 ~ 24220008 (-)
LOC122343128 LOC107728228,LOC107569032,LOC107685875,LOC107705465,LOC107574018 coding downstream 515995 23816849 ~ 23929534 (-)
LOC122343107 LOC107566978,LOC107575457,LOC107561645,LOC107655025 coding downstream 717611 23725752 ~ 23727918 (-)
ckap4 NA coding upstream 28706 24476996 ~ 24479914 (-)
LOC122343108 LOC107677819,LOC107725800 coding upstream 37072 24485362 ~ 24492499 (-)
LOC122342346 LOC107581033 coding upstream 93848 24542138 ~ 24544170 (-)
LOC122342998 NA coding upstream 109842 24558132 ~ 24564000 (-)
LOC122342983 NA coding upstream 134677 24582967 ~ 24593953 (-)
G31152 NA non-coding downstream 12128 24424927 ~ 24433401 (-)
G31109 LOC107656690 non-coding downstream 19460 24249836 ~ 24426069 (-)
G31142 NA non-coding downstream 112966 24331877 ~ 24332563 (-)
LOC122343180 NA non-coding downstream 131208 24313790 ~ 24314321 (-)
G31127 NA non-coding downstream 133237 24305255 ~ 24312292 (-)
G31124 NA non-coding upstream 5171 24453461 ~ 24464894 (-)
G31121 NA non-coding upstream 9124 24457414 ~ 24458259 (-)
G31155 NA non-coding upstream 17073 24465363 ~ 24466556 (-)
G31161 NA non-coding upstream 65666 24513956 ~ 24552855 (-)
G31165 LOC107685875,LOC107671223,LOC107570416,LOC107728228,LOC107749047 non-coding upstream 105128 24553418 ~ 24683082 (-)
LOC122342340 NA other downstream 118266 24323970 ~ 24327263 (-)
G31091 kdm5a,LOC107710764,LOC107685890,LOC107693604 other downstream 334856 24110224 ~ 24110673 (-)
G31050 NA other downstream 673761 23745486 ~ 23771768 (-)
G31017 NA other downstream 899160 23478525 ~ 23546369 (-)
LOC122342328 LOC107671223,LOC107685875,LOC107728228,LOC107749047,LOC107553362,LOC107574018,LOC107569032,LOC107575215 other downstream 1008514 23416891 ~ 23437015 (-)
LOC122342407 LOC101068103,LOC105418166,LOC106522608,LOC108412963,LOC105419408,LOC108431938,LOC107395447,LOC106674638 other upstream 305766 24754056 ~ 24760786 (-)
G31314 NA other upstream 1110750 25559040 ~ 25561198 (-)
G31394 NA other upstream 1725409 26173699 ~ 26175249 (-)
G31400 LOC102197881 other upstream 1876189 26324479 ~ 26325236 (-)
G31463 LOC107665166,LOC107752513,LOC107549841 other upstream 2918122 27366412 ~ 27367649 (-)

Expression


Co-expression Network