LOC122343162 (LOC107575631,LOC107741456,LOC107667978,LOC107575420,LOC107741609,LOC107727338,LOC107575457,LOC107566978)


Basic Information

Item Value
gene id LOC122343162
gene name LOC107575631,LOC107741456,LOC107667978,LOC107575420,LOC107741609,LOC107727338,LOC107575457,LOC107566978
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20440548 ~ 20443225 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006250678.1
AGTGAATACattaaacaagaacaaaacaagcaCAATATCTCAGATGAAGCTCTAGTCAACCTATTCTACTGCTTACTTGAACTCAAGGATCATTCAATATATGAGGAAATACAGAGTTACCTCAGTTCAGATGAACATCCAGAAAGAGATCTCTCATCTTCAATGTGCACAGTCCTGACCTACATACTGTTGATATCAGAGAAGGTGCTGGATGAGTTTAACCCAAAGAAGTTTACATCATCATCTTCAAATTACGCTATACTTTGTCAACTGTGAAATGCTGCAGAAAAGCACTATTTGATGGCTGTGGTTTTAatgaaacatgctgtgaaactgtgtcttctgctctacaatcatcaaactctCATCTGATAGAGCTGAACCTGAGCAGCAatcacctgcaggattcaggagtgaagctgctttctgatggactgaagagttcaCACTGTCGACTGAACATACTGAGgcTGAGTGGTTGTAATTTCACTTCTCAATCCTGTGAAAGTTTGTCTTTAGCTCTACAGTCCTCAAAATctgtcctgagagagctggatctgagtaacaatgaccttcAGGATTCTGGAGTTAAACTTCTTTCTGAAGGACTAAAGAGTTTAAACTCTAAGCTGGAGATACTGAGGTTTGAAGTTTCAAG
>XR_006250679.1
AGTGAATACattaaacaagaacaaaacaagcaCAATATCTCAGATGAAGCTCTAGTCAACCTATTCTACTGCTTACTTGAACTCAAGGATCATTCAATATATGAGGAAATACAGAGTTACCTCAGTTCAGATGAACATCCAGAAAGAGATCTCTCATCTTCAATGTGCACAGTCCTGACCTACATACTGTTGATATCAGAGAAGGTGCTGGATGAGTTTAACCCAAAGAAGTTTACATCATCATCTTCAAATTACGCTATACTTTGTCAACTGTGAAATGCTGCAGAAAAGCACTATTTGATGGCTGTGGTTTTAatgaaacatgctgtgaaactgtgtcttctgctctacaatcatcaaactctCATCTGATAGAGCTGAACCTGAGCAGCAatcacctgcaggattcaggagtgaagctgctttctgatggactgaagagttcaCACTGTCGACTGAACATACTGAGgcTGAGTGGTTGTAATTTCACTTCTCAATCCTGTGAAAGTTTGTCTTTAGCTCTACAGTCCTCAAAATctgtcctgagagagctggatctgagtaacaatgaccttcAGGATTCTGGAGTTAAACTTCTTTCTGAAGGACTAAAGAGTTTAAACTCTAAGCTGGAGATACTGAGTTTTACAATCTTCAAACTCTGttctgagagagctggacctgagtaacaatgacctgcaggattcagggagtgaagcttttatttctgatg
>XR_006250680.1
AGTGAATACattaaacaagaacaaaacaagcaCAATATCTCAGATGAAGCTCTAGTCAACCTATTCTACTGCTTACTTGAACTCAAGGATCATTCAATATATGAGGAAATACAGAGTTACCTCAGTTCAGATGAACATCCAGAAAGAGATCTCTCATCTTCAATGTGCACAGTCCTGACCTACATACTGTTGATATCAGAGAAGGTGCTGGATGAGTTTAACCCAAAGAAGTTTACATCATCATCTTCAAATTACGCTATACTTTGTCAACTGTGAAATGCTGCAGAAAAGCACTATTTGATGGCTGTGGTTTTAatgaaacatgctgtgaaactgtgtcttctgctctacaatcatcaaactctCATCTGATAGAGCTGAACCTGAGCAGCAatcacctgcaggattcaggagtgaagctgctttctgatggactgaagagttcaCACTGTCGACTGAACATACTGAGgcTGAGTGGTTGTAATTTCACTTCTCAATCCTGTGAAAGTTTGTCTTTAGCTCTACAGTCCTCAAAATctgtcctgagagagctggatctgagtaacaatgaccttcAGGATTCTGGAGTTAAACTTCTTTCTGAAGGACTAAAGAGTTTAAACTCTAAGCTGGAGATACTGAGATTTTCCATCTGTAATCTCACC

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006250678.1 False 658 lncRNA 0.40 3 20440548 20443007
XR_006250679.1 True 733 lncRNA 0.40 4 20440548 20443225
XR_006250680.1 False 665 lncRNA 0.40 4 20440548 20443106

Neighbor

gene id symbol gene type direction distance location
LOC122343110 NA coding upstream 48174 20391465 ~ 20392374 (+)
LOC122343026 NA coding upstream 62442 20376410 ~ 20378106 (+)
LOC122343930 NA coding upstream 192319 20248111 ~ 20248229 (+)
LOC122342265 NA coding upstream 256050 20183653 ~ 20184498 (+)
trnam-cau_25 NA coding upstream 333421 20107054 ~ 20107127 (+)
LOC122342274 NA coding downstream 121 20443346 ~ 20446136 (+)
LOC122342275 NA coding downstream 25001 20468226 ~ 20469061 (+)
LOC122343122 NA coding downstream 27445 20470670 ~ 20476708 (+)
LOC122342276 NA coding downstream 62186 20505411 ~ 20515629 (+)
LOC122343005 NA coding downstream 99907 20543132 ~ 20559014 (+)
LOC122343173 NA non-coding upstream 2040 20437665 ~ 20438508 (+)
G29883 LOC107723241,LOC107659605,LOC107550566 non-coding upstream 170436 20266836 ~ 20270112 (+)
LOC122343176 NA non-coding upstream 250577 20187984 ~ 20189971 (+)
G29857 NA non-coding upstream 283025 20001067 ~ 20157523 (+)
G29854 NA non-coding upstream 457654 19981924 ~ 19982894 (+)
LOC122343178 NA non-coding downstream 16145 20459370 ~ 20462342 (+)
G29927 LOC107681551 non-coding downstream 53872 20497097 ~ 20497868 (+)
G29945 NA non-coding downstream 187595 20630820 ~ 20631329 (+)
G29947 LOC107709565,LOC107727338,LOC107575420,LOC107569100 non-coding downstream 202032 20645257 ~ 20645535 (+)
G30005 NA non-coding downstream 342084 20785309 ~ 20785530 (+)
G29921 NA other upstream 71732 20367675 ~ 20368816 (+)
LOC122342270 NA other upstream 93824 20344346 ~ 20346724 (+)
LOC122343063 NA other upstream 397095 20037933 ~ 20043453 (+)
G29835 NA other upstream 654420 19731262 ~ 19786128 (+)
G29961 NA other downstream 253447 20696672 ~ 20706846 (+)
G30058 NA other downstream 675337 21118562 ~ 21142831 (+)
LOC122342286 LOC107578117 other downstream 725968 21169193 ~ 21174340 (+)
LOC122342301 LOC107563870,LOC107718524,LOC107683800,LOC107564010,LOC107563545 other downstream 925418 21368643 ~ 21761181 (+)
G30119 NA other downstream 944968 21388193 ~ 21630120 (+)

Expression


Co-expression Network