LOC122343179 (LOC107667978,LOC107563545,LOC107741456)


Basic Information

Item Value
gene id LOC122343179
gene name LOC107667978,LOC107563545,LOC107741456
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21668810 ~ 21673424 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006250700.1
AAGAAAAGTTATACTCTAGGGTCTACCAAAATTATTCCATTCCCAGTTACTTTGAACCAGAGCAGAGTGAATGTGAGAATGGATGTCACAACacgagaagaagaaaaagaagaaaaaactggTTTAACTTGTTACGTAAAAGCTGTAAAAGCTCAGAGGTGTGGAACACTACAGTTCACAGGACGAAGAAGAAAGATCTGCACACGTTTATCTGAGGCAAAAGGTGGTGAAGGACGATGGCGTCCGTTAAAGAGCTGCTTGTGGACTTACTGAAGGATCTGAAAGAAGCTGAACCAAAGGAGTTTCATTGGTGGTTAAAGAATGGACATCATAAGCCTATATCAAAGTCTGAAATGGAGAAGGCAGATGTATTAGACACAGTAGATAAGATGGTTATGTGTTTTGGACCAGAAGACGCTGTGAAGGTCACGGTAGACATCCTGAGAAAGATGAACCAAAATGATCTGGCTAAACAGTTGCAGAATGACCACAAGTaagctCAGACGGAGGACAATATGAAGACATCTGTCCCTTTTAGAGagatgcaaaatgtcttgaaaactcacaaaaacaacatgaagatgaaggtaaaatacatttttgagggCAACAAAGAAACTGACACAGATCTGAAAGCTGTTTACACAGatctgttcatcacagaggGAGATATGAAAGATGTAAATCAGGAACATGAGATTCTGAAGATTGATGATGCTTTCAAGAgcaaaaaacactgaacaaaacaatcaaatgcaatgatatatttactgaactGAGGAAAAACAATGAGTTAAAGATTGTGTTGACCAAAggagtcgctggcattggaaaaactgtgtctgtgcacaagttcatcctggactgggccGAAGGAGAATCTAATCAGGATATAGACTGTGTGTTCCTgcttccattcagagagatCAATGTgattaaagagagagaggtcaGTCTCCATGAGTTTCTGCTGAAATTTAATCCTGAATTGAAGGACCTGGAGAAATCAAAGTTATAAActtgtgtttatatttgatggacttgatgagAGTGGACTGCCTTTGAATTTTGAAAGTGATACATTGAACACTGTTGAGGAAAGATCATCTGTGGATGTGCTGTTTACAAGTCTGGTCAAAGGTAAACTGCTTCCATCAGCTCTGGTCTGGGTCACATcacgaccagcagcagccaatcagatccctccTCAGTATGTAGGTTTGTTCACAGAGGTGCGAGGATTCACTGACCTACAGAAGGAGGAGTACTTCAGAAAGAGATTCACAGATGAGAGTCTGTcctccagaatcatctcacacattaagACGTCTCATAgtctctacatcatgtgccacattcctgtgttctgctggatttcagccacagtacttcaggatattttcactgagaacaatgaagagaacatcagcacaacactcactgaaatgtacattcactcCCTGCTGATAcagatgaacataaaaaaacagaaatacaatgAACAAGAAGAAAGAGAATGTTCAGAGCACttacttttaaatagaaagatGATTCTGAAGTTAGCCAAGCTAGCGTTTGAACAGCTGAAGCAGGGAAACATTGTGTTCTATGAGAAACATCTGAAACCATGTAGTATTGATGTGAGTAAAGATGCTGAGTTCACAGGAATGATCGCTGAGATCTTTAAGAAGGAAGTTGGACTTTATTAGACAAAGGTCTTCTGCTTTGTGCATCTGGGTGTTCAAGAGTTCCTCGCTGCAGTGCATGTGTTCACCTGTTacctgaaaaaaacaagcaagagcTTACGTTTTTCTTTGAGGATTCACAAACTACAGTCATACAAAATCTTACATTTCCTTTTAGAAAGGTCAAATTGCATGACTTAACAGAGAGAGCAATTGAAAAAGCAATGCAGAGTAAGAGAGGGCATCTGGACCTGTTCCTGCGGTTTCTGATGGGAATTTCACTGGAATCCAGTCAAGTATAAGTttaataagtttatttaaaaacattttacagtcttAGACGGGACAGGATATATAGTCTATACAGTACAAATGTACCGTTTCTACGGAATCTACCTTGatgtatgtgactttttttctttcagacaatTCCAATCAAATTCAATTGTCCTAGTCCCTCCAAGTCTTTCCATTGTATTTATCATGTGGTAGCTTTTAACAGTTCAGAACACATAACGTATTAGTAATGACTTCCCTCAATTGGCTCTTGGGGGGTTGAACCACCCGCCCACTAAAATTATAGAGATTAAAAATGCCAGTTaaattttttgtctaaaaaggaaaaaaatcccatacacctaggatgcttcaaaagtatgaaaaacatctaattttcatttagaattttcAAGGGTGGACTAACCCTTTAAGCATGTTCAACTACAGAGACAATCAGTGATGAACCCACCACTTGTATATAGtctgtatataatatgtatataattatcgTGTTAAACTTGTATAGATTTTCtacatgtaatctcactgcacagtGTGCAATATCGCAGAagatataatatcataattgttgttttaatgatgtgagATTTGAAATGATCTAGTAGTTTTGCAAAACACACCCTCAGAGTGTGAAGTCTAGACTAGTGAGTGTGCACATTTAGAGTGATTTTCTTTACTGCTtgattctatttaataaaatacatttagaatgatCACAAATTAAAGACATGCAGGCAGACAATTTCATATAGTTAATTACCATGATGTAACAATTTAGTTCACTGAAGATGAGCATAGTGAGAACtcatgtgcagttttatttacagagatATAATCCATAATCTAAACAAACGAATACTTGACTTGAAACACACTTGCCTGAAAAATGAATAGACTTGACTTGGAATAGACTTGGCATGAACAGGATAGATTCATTGACAGCAGGTTCCCTGATAACAAATGCACATCTCAGAGACGTCAAATAGACGTCTGCATTTATATCTTCAAGGcatagtttttttgtgtatttgcttATCTGAGCCACTggcctctgcttcctcagtggaaCATGCTGGAAGAAGAAAATTGGTGAAATTGAGGAGATCCTTCTCCAGTATTGAGGTATTCCTTCCACCATCCGACAATATTCCCAGTCGAAGTCAGCAGATTTCCACCTTCACTTAAATTTGGCAATATGGGAGTGCTTCCCACAAGCTGTTTAACTATTTTAGATTCACAAACTAGAATAAAACAGTCCAGTGATTTATCAGTAAGATTGgcgttttagaaaaaaaataataataatgtttttattaattaaaaaatgtattaaaatgtagaaccaataatgaatatgcattgtgaatagataataatagacaactaaatatgaagaaagatggcaaagaatttgtagaaacaaatagagtgaagacagaatgtCTCTCCTAGGACCACAACCTTaatgtggtggaggggtttgagtgcctcaGTGGCCCTAGGAGCTATGTTGGCCGGGGCTATATggccctggtagggtctcccaaagc
>XR_006250701.1
AAGAAAAGTTATACTCTAGGGTCTACCAAAATTATTCCATTCCCAGTTACTTTGAACCAGAGCAGAGTGAATGTGAGAATGGATGTCACAACacgagaagaagaaaaagaagaaaaaactggTTTAACTTGTTACGTAAAAGCTGTAAAAGCTCAGAGGTGTGGAACACTACAGTTCACAGGACGAAGAAGAAAGATCTGCACACGTTTATCTGAGGCAAAAGGTGGTGAAGGACGATGGCGTCCGTTAAAGAGCTGCTTGTGGACTTACTGAAGGATCTGAAAGAAGCTGAACCAAAGGAGTTTCATTGGTGGTTAAAGAATGGACATCATAAGCCTATATCAAAGTCTGAAATGGAGAAGGCAGATGTATTAGACACAGTAGATAAGATGGTTATGTGTTTTGGACCAGAAGACGCTGTGAAGGTCACGGTAGACATCCTGAGAAAGATGAACCAAAATGATCTGGCTAAACAGTTGCAGAATGACCACAActCAGACGGAGGACAATATGAAGACATCTGTCCCTTTTAGAGagatgcaaaatgtcttgaaaactcacaaaaacaacatgaagatgaaggtaaaatacatttttgagggCAACAAAGAAACTGACACAGATCTGAAAGCTGTTTACACAGatctgttcatcacagaggGAGATATGAAAGATGTAAATCAGGAACATGAGATTCTGAAGATTGATGATGCTTTCAAGAgcaaaaaacactgaacaaaacaatcaaatgcaatgatatatttactgaactGAGGAAAAACAATGAGTTAAAGATTGTGTTGACCAAAggagtcgctggcattggaaaaactgtgtctgtgcacaagttcatcctggactgggccGAAGGAGAATCTAATCAGGATATAGACTGTGTGTTCCTgcttccattcagagagatCAATGTgattaaagagagagaggtcaGTCTCCATGAGTTTCTGCTGAAATTTAATCCTGAATTGAAGGACCTGGAGAAATCAAAGTTATAAActtgtgtttatatttgatggacttgatgagAGTGGACTGCCTTTGAATTTTGAAAGTGATACATTGAACACTGTTGAGGAAAGATCATCTGTGGATGTGCTGTTTACAAGTCTGGTCAAAGGTAAACTGCTTCCATCAGCTCTGGTCTGGGTCACATcacgaccagcagcagccaatcagatccctccTCAGTATGTAGGTTTGTTCACAGAGGTGCGAGGATTCACTGACCTACAGAAGGAGGAGTACTTCAGAAAGAGATTCACAGATGAGAGTCTGTcctccagaatcatctcacacattaagACGTCTCATAgtctctacatcatgtgccacattcctgtgttctgctggatttcagccacagtacttcaggatattttcactgagaacaatgaagagaacatcagcacaacactcactgaaatgtacattcactcCCTGCTGATAcagatgaacataaaaaaacagaaatacaatgAACAAGAAGAAAGAGAATGTTCAGAGCACttacttttaaatagaaagatGATTCTGAAGTTAGCCAAGCTAGCGTTTGAACAGCTGAAGCAGGGAAACATTGTGTTCTATGAGAAACATCTGAAACCATGTAGTATTGATGTGAGTAAAGATGCTGAGTTCACAGGAATGATCGCTGAGATCTTTAAGAAGGAAGTTGGACTTTATTAGACAAAGGTCTTCTGCTTTGTGCATCTGGGTGTTCAAGAGTTCCTCGCTGCAGTGCATGTGTTCACCTGTTacctgaaaaaaacaagcaagagcTTACGTTTTTCTTTGAGGATTCACAAACTACAGTCATACAAAATCTTACATTTCCTTTTAGAAAGGTCAAATTGCATGACTTAACAGAGAGAGCAATTGAAAAAGCAATGCAGAGTAAGAGAGGGCATCTGGACCTGTTCCTGCGGTTTCTGATGGGAATTTCACTGGAATCCAGTCAAGTATAAGTttaataagtttatttaaaaacattttacagtcttAGACGGGACAGGATATATAGTCTATACAGTACAAATGTACCGTTTCTACGGAATCTACCTTGatgtatgtgactttttttctttcagacaatTCCAATCAAATTCAATTGTCCTAGTCCCTCCAAGTCTTTCCATTGTATTTATCATGTGGTAGCTTTTAACAGTTCAGAACACATAACGTATTAGTAATGACTTCCCTCAATTGGCTCTTGGGGGGTTGAACCACCCGCCCACTAAAATTATAGAGATTAAAAATGCCAGTTaaattttttgtctaaaaaggaaaaaaatcccatacacctaggatgcttcaaaagtatgaaaaacatctaattttcatttagaattttcAAGGGTGGACTAACCCTTTAAGCATGTTCAACTACAGAGACAATCAGTGATGAACCCACCACTTGTATATAGtctgtatataatatgtatataattatcgTGTTAAACTTGTATAGATTTTCtacatgtaatctcactgcacagtGTGCAATATCGCAGAagatataatatcataattgttgttttaatgatgtgagATTTGAAATGATCTAGTAGTTTTGCAAAACACACCCTCAGAGTGTGAAGTCTAGACTAGTGAGTGTGCACATTTAGAGTGATTTTCTTTACTGCTtgattctatttaataaaatacatttagaatgatCACAAATTAAAGACATGCAGGCAGACAATTTCATATAGTTAATTACCATGATGTAACAATTTAGTTCACTGAAGATGAGCATAGTGAGAACtcatgtgcagttttatttacagagatATAATCCATAATCTAAACAAACGAATACTTGACTTGAAACACACTTGCCTGAAAAATGAATAGACTTGACTTGGAATAGACTTGGCATGAACAGGATAGATTCATTGACAGCAGGTTCCCTGATAACAAATGCACATCTCAGAGACGTCAAATAGACGTCTGCATTTATATCTTCAAGGcatagtttttttgtgtatttgcttATCTGAGCCACTggcctctgcttcctcagtggaaCATGCTGGAAGAAGAAAATTGGTGAAATTGAGGAGATCCTTCTCCAGTATTGAGGTATTCCTTCCACCATCCGACAATATTCCCAGTCGAAGTCAGCAGATTTCCACCTTCACTTAAATTTGGCAATATGGGAGTGCTTCCCACAAGCTGTTTAACTATTTTAGATTCACAAACTAGAATAAAACAGTCCAGTGATTTATCAGTAAGATTGgcgttttagaaaaaaaataataataatgtttttattaattaaaaaatgtattaaaatgtagaaccaataatgaatatgcattgtgaatagataataatagacaactaaatatgaagaaagatggcaaagaatttgtagaaacaaatagagtgaagacagaatgtCTCTCCTAGGACCACAACCTTaatgtggtggaggggtttgagtgcctcaGTGGCCCTAGGAGCTATGTTGGCCGGGGCTATATggccctggtagggtctcccaaagc

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006250700.1 True 3535 lncRNA 0.38 4 21668810 21673424
XR_006250701.1 False 3530 lncRNA 0.38 4 21668810 21673424

Neighbor

gene id symbol gene type direction distance location
LOC122343036 LOC107563870,LOC107718524 coding downstream 5977 21655902 ~ 21662833 (-)
LOC122343099 NA coding downstream 14813 21651364 ~ 21653997 (-)
LOC122342299 NA coding downstream 38652 21629480 ~ 21630158 (-)
LOC122343039 NA coding downstream 126521 21537322 ~ 21542289 (-)
LOC122342973 LOC107685875,LOC107749047,LOC107728228 coding downstream 139864 21517473 ~ 21528946 (-)
LOC122342300 LOC107575420,LOC107563545,LOC107575457,LOC107741456 coding upstream 41255 21714679 ~ 21736541 (-)
LOC122342303 NA coding upstream 101674 21775098 ~ 21780619 (-)
LOC122342306 LOC107749047,LOC107728228 coding upstream 173696 21847120 ~ 21860284 (-)
LOC122343106 NA coding upstream 196991 21870415 ~ 21878792 (-)
LOC122343076 LOC107718513,LOC107692125 coding upstream 562333 22235757 ~ 22239007 (-)
G30408 NA non-coding downstream 168812 21499638 ~ 21499998 (-)
G30406 NA non-coding downstream 175903 21492264 ~ 21492907 (-)
G30343 NA non-coding downstream 542739 21117815 ~ 21126071 (-)
G30301 LOC107707774,LOC107566977,LOC107677745 non-coding downstream 600622 21065914 ~ 21068188 (-)
G30317 LOC107561645,LOC107575420,LOC107747810,LOC107575457,LOC107741456,LOC107667978 non-coding downstream 694745 20972276 ~ 20974065 (-)
G30425 NA non-coding upstream 299 21673723 ~ 21676131 (-)
G30423 LOC107575420,LOC107667978,LOC107563545 non-coding upstream 3452 21676876 ~ 21809618 (-)
G30465 NA non-coding upstream 607248 22280672 ~ 22281189 (-)
G30499 NA non-coding upstream 685793 22359217 ~ 22421953 (-)
LOC122343195 NA non-coding upstream 723094 22396518 ~ 22398023 (-)
G30395 NA other downstream 282373 21383469 ~ 21386437 (-)
LOC122343135 NA other downstream 331929 21327615 ~ 21336881 (-)
LOC122343113 LOC107749046 other downstream 389767 21276222 ~ 21279043 (-)
LOC122343098 NA other downstream 615085 21048857 ~ 21053725 (-)
LOC122343123 NA other downstream 804404 20858423 ~ 20864406 (-)
G30372 NA other upstream 63667 21737091 ~ 21740330 (-)
LOC122342302 NA other upstream 95700 21769124 ~ 21772399 (-)
G30450 NA other upstream 455030 22128454 ~ 22245160 (-)
G30457 NA other upstream 542611 22216035 ~ 22216470 (-)
LOC122342328 LOC107671223,LOC107685875,LOC107728228,LOC107749047,LOC107553362,LOC107574018,LOC107569032,LOC107575215 other upstream 1743467 23416891 ~ 23437015 (-)

Expression


Co-expression Network