LOC122343188 (si:dkey-71l4.4,LOC107667913,LOC107575399,LOC107574515,LOC107698614,LOC107671223,LOC107663329,LOC108183671,LOC107574820)


Basic Information

Item Value
gene id LOC122343188
gene name si:dkey-71l4.4,LOC107667913,LOC107575399,LOC107574515,LOC107698614,LOC107671223,LOC107663329,LOC108183671,LOC107574820
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 22306795 ~ 22311420 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006250710.1
ggctgtggttatttgtcttcagctctgacttcaaacccctcacacctgagagagctggatctgagctacaatcatcctggagattcaggagtgaagctgctctctgaaaaactggaggacTCAACCTGCTCATTGGACAAACTGAAtgtGGATCATGGAGAAGATTCCAGGATTACAGAAGGACCAAAGAAATgGTTGTGTTttctcacactggatccaaacacagcacacactcaactcagtctgtctgag

Function

symbol description
si:dkey-71l4.4 Predicted to be involved in intracellular signal transduction. Human ortholog(s) of this gene implicated in several diseases, including CINCA Syndrome; Muckle-Wells syndrome; autosomal dominant nonsyndromic deafness 34; familial cold autoinflammatory syndrome (multiple); and gestational trophoblastic neoplasm. Orthologous to several human genes including NLRP13 (NLR family pyrin domain containing 13); NLRP14 (NLR family pyrin domain containing 14); and NLRP2 (NLR family pyrin domain containing 2).

NR:

description
PREDICTED: ribonuclease inhibitor-like

GO:

id name namespace
GO:0005524 ATP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006250710.1 True 252 lncRNA 0.46 3 22306795 22311420

Neighbor

gene id symbol gene type direction distance location
LOC122343041 zbtb24,LOC107736039 coding upstream 199338 22105236 ~ 22107457 (+)
LOC122343067 NA coding upstream 201863 22103318 ~ 22104932 (+)
LOC122342305 LOC107697548,LOC107574116,LOC107758214 coding upstream 464565 21841181 ~ 21842230 (+)
LOC122343035 NA coding upstream 492358 21809156 ~ 21814437 (+)
LOC122343144 NA coding upstream 564490 21741323 ~ 21742305 (+)
LOC122342312 NA coding downstream 92633 22404053 ~ 22405822 (+)
LOC122343018 LOC107705900 coding downstream 122634 22434054 ~ 22446278 (+)
LOC122343138 si:ch211-133h13.1,LOC107574515,LOC107574820 coding downstream 237197 22548617 ~ 22561763 (+)
LOC122342965 NA coding downstream 301695 22613115 ~ 22621886 (+)
LOC122343101 NA coding downstream 374282 22685702 ~ 22689679 (+)
G30233 NA non-coding upstream 25825 22273811 ~ 22280970 (+)
G30205 NA non-coding upstream 51362 22141344 ~ 22255433 (+)
G30212 NA non-coding upstream 54276 22174955 ~ 22252519 (+)
G30226 NA non-coding upstream 55003 22250435 ~ 22251792 (+)
G30206 NA non-coding upstream 66501 22162638 ~ 22240294 (+)
G30480 NA non-coding downstream 28742 22340162 ~ 22344814 (+)
LOC122343186 si:rp71-7l19.2,LOC107575109,LOC107690967,LOC107575399,LOC107575457,LOC107575637,LOC107688608,LOC107665206,LOC107671223,LOC107719059 non-coding downstream 106507 22417927 ~ 22419692 (+)
G30526 NA non-coding downstream 193835 22505255 ~ 22506192 (+)
G30528 LOC107574372,LOC107655767,LOC107710146,LOC107574376,LOC107571418,LOC107574588 non-coding downstream 220995 22532415 ~ 22533032 (+)
LOC122343193 NA non-coding downstream 228964 22540384 ~ 22541485 (+)
LOC122342310 LOC107685875,LOC107671223,LOC107749047,LOC107728228,LOC107576424 other upstream 1647 22296897 ~ 22305148 (+)
G30218 LOC106676322,LOC106676931,LOC106676323,LOC107752219,LOC106675762,LOC106674878,LOC106676183 other upstream 74871 22231470 ~ 22231924 (+)
LOC122342301 LOC107563870,LOC107718524,LOC107683800,LOC107564010,LOC107563545 other upstream 545614 21368643 ~ 21761181 (+)
G30115 NA other upstream 665039 21639540 ~ 21641756 (+)
G30119 NA other upstream 676675 21388193 ~ 21630120 (+)
LOC122343019 LOC107705900 other downstream 350406 22661826 ~ 22682712 (+)
LOC122342317 NA other downstream 466563 22777983 ~ 22780139 (+)
G30636 LOC107575420,LOC107667978,LOC107563545,LOC107741456 other downstream 817686 23129106 ~ 23130189 (+)
G30632 NA other downstream 846139 23157559 ~ 23159756 (+)
LOC122342321 LOC107741609,LOC107575420,LOC107710255 other downstream 852275 23163695 ~ 23168007 (+)

Expression


Co-expression Network