LOC122343196


Basic Information

Item Value
gene id LOC122343196
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18591447 ~ 18594116 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006250718.1
TATGGCTGCGCCGCACTGCTGCATCTGATTCTCCTGAagaaaaAAAAACCGATGTAAAGCGACCGATGTCCACGGCGACACGCTATTGTAAAGATGacgtttattaaagaggagagtgaagatGTGAAGATCAAAGAAACGTTTGGAATAAAACACGAAGAGATTACGGAACCAGCAGaattttgcTGCACTGCTTGATGTGGCCGTGGGACAGGCAGCGACAAACTGTTTGAGGACCTTAGGGGCCTAGAACATTTGCAGTGGACAAGAAGATCAGAGAAGTACTGTGGAGCCTGGCTATTTAGCCCCATATACACTTGCAATGAAACCAAGTCAAACACAGTATTCAACCGGCAGCCAATGAAGAGAAGCTGGAACGGGTGTATATCGCCGCGTTCTTGCGAGGCACATCAGATCTCGCTTGTGCCACAAAATCTTGTCACAACGAATTTGATGAAGTTTGTGCAAAAATGGATTTGAGGTTTCAATGCGAGGCTGGGCAACTCTGGGTCACTGTCTGCAGAGACCAAACTTGGTATATTATGAAAAGCATGAAAGCATGAGGGTACAGCACCACCTACTGGtcaaaagatatataaaatgtacatttccgTTCATAACCTCTGACCAGTCTGGCTAAAAATCATAAGATCGGCCATGTAGATATGAAATGGTATACTGAATTGAACGATACCTAATTTTCCAAATTGTGAGTTTATAGTAAAATATCCGTCAACAAATGTTTCTCGGGGGGCCTCCTGCTCATGGAGAGCTGTAGAGTTCAGCTTCAGACACAATCCAGTATATCTGAGCCAGATAATCAAGATATTCAGGGCTGCTTAATTACTAACAGGTGTGTTGAAGCAGGGTTGAAAcgtaaaggtgctgtatgtatgATTGACACCCAGTGGTTGAACTAGATATTGCAGTCCAaacctaaaatattattttttttacccagcCCCTGCTATTTAGTCTTGACGCACCCGCATGTTGCCAGATTCCCGCTCAGACCCATTTCGtttgccagcttccatgactgaaatgaaatttcAGGTCTGTTATCTGCCAACTGCCAACCCGTGGTTACGAAACAACTTAGCATACACCTGCAAACTGTGTGGGAAGACCTTCTCGCAAAGAGGAAATCTGAAGacttcacaccggagagaggccattcatttgttcatttgtggCCAGTGTGGAAAAAGGTTCAGAGGTAAAGTTAACCTCAATTACCACATAAGGATTCACTCAAGACAGAACCGTTTTCAGTGTGGGAGAAGTTTCGCAGACAGGAAACACTTTAAGAAACACGCGATGACTTGCACTGTAGACAAGTTCTCATGTCCTCAGTGTAAAAAGAGTTTTGCGTATCAATAAGACCTGAGACATGGAAAGAAAGTGCAGTATtcaggcatttttttttaaaaaattagtgatttcaaaaacgtaaaaatacacataaaaagtCACGCAGATGTGAGACGTTATTTGTGTTCTTTGTGTGGGAAGAGTTTTAAATGGCTCAGCAATTTGAAATGGCACCAGAAAACGCGTATCTGTGCGAAATTAAGACTTCGGTAAGACTGCAGCTGATTGACCACCTTCACGATCATTTGCATCATTCACCTCCGTATACTAAAagagactttttatttttatgttgtatatacatataaggTACAAATTGTATGGTGGCGATGGTTCATTACATCTATCGAAACCTTAAAATCAAAGTTAAAAGGCTTATCGGATGCCCATTTTCCACAAATTGATATGATTCTTTgtggtcttaatgaaaagtctataacatTGGTAACTTGGTTAAAATTTGGATTTACTGACAAGATGCGCATGAATATATCGATCGCTATATCTCGCCCAGCCTTTAAGATGGAAATAAAGAACGAATGCTGTAATTCTTGACCTCGAGATCCACTTTCCTGCAGAATTTAACTCCAATCCTAATCGAATGCACATGAACAAACTAATCAAGATCTTCAGGATTACTACAGTTGCAGGTAGGTTTGTTTAATCCAGGTTGGAGATAATCTCTGAAGTAAAGTGGATTGGTTCTTGTGGAAGTGGAAGACCCCTGCTGTAACTTTAAGGGCTACTGTACAAACGTGACAACAACTTCCATGTAAGGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006250718.1 True 2154 lncRNA 0.41 3 18591447 18594116

Neighbor

gene id symbol gene type direction distance location
trim24 trim24,LOC107709964,LOC107687572,LOC107747644,LOC107562152,LOC107690747 coding upstream 26081 18556569 ~ 18565366 (+)
rab21 rab21,zgc:154045,LOC107687573,LOC107690748,LOC106609839 coding upstream 37058 18547531 ~ 18554389 (+)
LOC122343129 LOC107565648,LOC107660365,LOC106563294,LOC108274068,LOC107733731 coding upstream 369127 18218716 ~ 18222320 (+)
lman2la lman2l,lman2la,LOC107660366,LOC107565653,LOC102299173 coding upstream 380554 18202735 ~ 18210893 (+)
ddx54 ddx54,LOC107729212,LOC107745378,LOC107674901,LOC107597958,LOC107566861,LOC102784149 coding upstream 593789 17984993 ~ 17997658 (+)
LOC122343002 NA coding downstream 25435 18619551 ~ 18627271 (+)
LOC122343000 LOC107554745,LOC107700104,LOC107746770 coding downstream 33309 18627425 ~ 18632437 (+)
si:ch211-166e11.5 LOC107685387,LOC107554747,LOC107712904 coding downstream 39993 18634109 ~ 18646928 (+)
LOC122342234 LOC107685386,LOC107554769,LOC107712902 coding downstream 52682 18646798 ~ 18655105 (+)
LOC122342235 LOC107685875,LOC107749047 coding downstream 164438 18758554 ~ 18782810 (+)
G29548 NA non-coding upstream 125610 18441631 ~ 18465837 (+)
G29544 NA non-coding upstream 130852 18435643 ~ 18460595 (+)
G29484 tbx3a,LOC107742157,LOC107597930,LOC107687999,LOC107728866 non-coding upstream 530531 18059335 ~ 18060916 (+)
G29476 NA non-coding upstream 588968 17999597 ~ 18002479 (+)
G29320 NA non-coding upstream 625696 17884328 ~ 17965751 (+)
G29591 NA non-coding downstream 6312 18600428 ~ 18603316 (+)
G29600 NA non-coding downstream 68744 18662860 ~ 18665083 (+)
G29627 NA non-coding downstream 190929 18785045 ~ 18785246 (+)
G29633 NA non-coding downstream 220767 18814883 ~ 18815278 (+)
LOC122343164 NA non-coding downstream 309119 18903235 ~ 18907824 (+)
G29545 NA other upstream 130130 18436460 ~ 18461317 (+)
G29526 NA other upstream 290258 18300415 ~ 18301189 (+)
atp5mj NA other upstream 1550617 17038419 ~ 17040830 (+)
G28982 NA other upstream 2117066 16473898 ~ 16474381 (+)
G28899 NA other upstream 2605721 15985219 ~ 15985726 (+)
G29642 NA other downstream 289063 18883179 ~ 18886402 (+)
G29814 LOC107660256 other downstream 696104 19290220 ~ 19342911 (+)
G29835 NA other downstream 1137146 19731262 ~ 19786128 (+)
LOC122343071 NA other downstream 1151618 19745734 ~ 19750074 (+)
LOC122343063 NA other downstream 1443817 20037933 ~ 20043453 (+)

Expression


Co-expression Network