LOC122343257


Basic Information

Item Value
gene id LOC122343257
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 9088755 ~ 9098978 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006250734.1
AGGGCTTTTCTTCGGGATTCCTGTCTGTAATGCTCCTCAAGAAATTCCAGAATCACTTCCAAATCGGTCTGATATTCCTGCGGACTGCTCTGGGTTTAACTGTTCTGCAACATCTGTGTCAAACCTTGGAATTGCTTCCTGACCGCTGTGGATGATAAAATGTGTCGAACTGTGCTTGAAGAGTATGAAAAGGTAATTACATGTGCACTTTAAtcttcagcatttaaaaaaaaaatatttatctgtAGAAATTTTTATTGCAGAAAGATAATAACTGAGCACttaaccaataaaaaaaaaaagttaggttaaatatgtaaataatgaacGAATGATTAACAGCCTTTAAATAAGCCTTGTTTTGGTCTCGTCTCTTCCTCGCTATCTGCCTTTAAATGTTTGCGTGAATTGGTTTATGAATTTATGCGTTTCACGCCTGCcaaagtatttacattttctgccGAAGCAGTAGCGAGGGCTTTATCTTTTCAAACAAAGAGCTGCTTTCCTTCCCCTTCTCTTCAACCCCTATTCAAAAGGGCCATTAATACCAAACCCAATGAGGGAAGGGCAGTATAACCACAACATAGCTCCTATTCAACTTCTTTATTTACTGGCACTCAATCAAAATGAGTTCCCAAAGTGCCTGCGCAGGTAAACAGATCACTTAAGCTGTCCGATGAAGTTAACTTCTATATCGTGGCTTACTGATTCTGGGTAAGAAAACAATACTGCCGTAATTGTTGATGTTAGGCCTGGCTCGAGTCCTTTGTGTATTTAATAGCGGAGCTTTATGGCGAAACATTTCAGCTCTATTCAGTGAACAGCAGGCCCGAACCTTACCTGATGTTTAAATAGTTACATTGCTTTTAATCTTAAGGGcagcttaaataaataatttgtttttatgcatttatgtctGTTTGATCATTAAAAGACAATTCTGTTTAAATTCGAGCCGCTGAAATTTTATTtggttctgtttgtttgttttacaaaaataagtttaataataCATAGAAATGTTACATTCTGTCATAATGTTTTCGTTTTGTCATGTTTGTTTGAGTGTTTGCTTTacaaaagtcattcattttattccttttatgcTTAAGACAATTATTAAGCGtgcattaatttattacaaagcaaacaaactgtattcatgtatttatttattcatttatattttaaataatgactttgTTCACTTAATTCGAAatcaaactgtaaaacaaacgCAATACGctgcattttcaaatgtttgcatGCAACAGTCTGATAGTTTTATGATAAGTCGATCAACTGTCATATAATTCCATAACTGGAACACACccagaatagttttttttcctcataggTTTTTTCCAGTTTTCCACTGAACTGTGGAAGTACCAAAAACCATGGAAGCCAGTGGCTACAGTTTGGTTAAGTAGACGTCTAGACTGCACTGTATAGGCTTTTGCAATATTATCCTGCATTTGCATATtcacttttacaaaaaataaaccttCTTTATTGGCATTACGCTTCCACGAAAAAATGTTCTATTCTgtatagtgaaaaataaaatgttgatcgTTAAAtgaattttgacaaaaaaaaggttcttaaGATTCTTTAATTATTCCTTTGCTATGAAAATATCGAATACCGGTTTTCAATGCAAAACGAACACCATTAGCTTGTTCAaattcagcaaaaataaaaggttaCTCGTTCTGTTTTCATGACTGTATGCAAATCTTCAACTTGAGGTAATTGTTTATTGGCACAGCAATAAAAGTTTTCGGATTAAACTAATTCGAACGATGTCTTGCCACAATCTTTGGAGAACcggaaaattatatttacagaaacagaGGGAGTGTGCTATATATATACTTCGATCGTTATTTGGATGAAAAACAATGATTATGCATGGCTTTCTTGTAGAAGTGCCTCAGGTAATTGCTCAAAAACATTCCAATTTAACATGACACCAAACCTGAAGCAAAATAGTAACCGTTTTTTTAGCACGGCACTTCATTTGATCATAtacagctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcccctTTAGGAAAGCCCTACAGCTATGTGGATCCCTCAACAGCTAGATATTGATCATTATTGCACATGTAAGGGAATTCCCCTTAAAAAAGAGCAACTCGCTTTGGTGTCGTGTTAACCGAGATAGAAGATATACAAATTCAGTTAAATGCTCGAAAAAGACAGGacagcaaacaacaacaacaacaacaaaaaggtaATTAAATGACATTGTGCAAAATCAAGCAAACCGAACTTTCACGCACTTTATAACTGCTAAATCACATTGAGCGTCTTCTACTGATCACTTTCATTTCTCGAACAGGTTCAAGGCTCTCGAGCACTTCATGATAAATGcaactgtgtgttttaaaaggCATCGGATGTAAACAAATGCGGAAGCCCTTTACCTTTATATGCTTTTAAGGACCATAAATCCTGACTTTGTAACAAATGATAgataaataattcacaattaAAGTGCTATTTCAATTGgctacaggtttttttttttttttttttttggccaaattACATGCTAAATTTATGTTTACCGGCCCAAGGAATCATGCTGTGTAACGATTGTAATTTTGCCAAACTGTACTACAAAAAGGGCAAGGCAATACATTTCTAACCTTATGATGGAATTTGAGTAAATGCAAGTCAAGGAATTTAgactttaattatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcccaaataacatatct

Function

GO:

id name namespace
GO:0005811 lipid droplet cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006250734.1 True 2820 lncRNA 0.35 2 9088755 9098978

Neighbor

gene id symbol gene type direction distance location
gnptab gnptab,LOC107695880,LOC107664853,LOC107725516,LOC107725515 coding upstream 46899 9024477 ~ 9041856 (+)
cwf19l1 cwf19l1,LOC107695878,LOC107725658,LOC107744920,LOC107664857 coding upstream 73499 9010162 ~ 9015256 (+)
itfg2 itfg2 coding upstream 118161 8962606 ~ 8970594 (+)
recql recql,LOC107695875,LOC107590167,LOC107725624,LOC107587911,LOC107744919,LOC107664885 coding upstream 127522 8953947 ~ 8961233 (+)
nup37 nup37,LOC107590136,LOC107695872,LOC107664874,LOC107744917 coding upstream 222837 8855404 ~ 8865918 (+)
LOC122343441 LOC107553872,LOC107593900 coding downstream 218602 9317580 ~ 9323622 (+)
LOC122343440 NA coding downstream 225922 9324900 ~ 9333048 (+)
ncaph2 ncaph2,LOC107725678,LOC107590292,LOC107732965,LOC107553878 coding downstream 256989 9355967 ~ 9373818 (+)
slc26a4 slc26a4,LOC107664887,LOC107695858,LOC107553866,LOC107733015 coding downstream 446707 9545685 ~ 9554560 (+)
slc26a3.2 LOC107695870,LOC107591024,LOC107725685,LOC107695899,LOC107725684,LOC107591277 coding downstream 457851 9556829 ~ 9576961 (+)
LOC122342713 NA non-coding upstream 6889 9078018 ~ 9081866 (+)
G27352 NA non-coding upstream 12619 9068931 ~ 9076136 (+)
G27347 LOC107590965,LOC107695883 non-coding upstream 30463 9057868 ~ 9058292 (+)
G27345 NA non-coding upstream 31458 9054021 ~ 9057297 (+)
G27301 NA non-coding upstream 135633 8952922 ~ 8953122 (+)
LOC122343448 NA non-coding downstream 248249 9347227 ~ 9351206 (+)
G27397 NA non-coding downstream 257388 9356366 ~ 9356870 (+)
G27404 NA non-coding downstream 386315 9485293 ~ 9485655 (+)
G27405 NA non-coding downstream 388383 9487361 ~ 9487576 (+)
G27406 NA non-coding downstream 390092 9489070 ~ 9489692 (+)
washc3 ccdc53,LOC107695862,LOC107590199,LOC107596601,LOC107744922,LOC107664856 other upstream 70422 9015841 ~ 9018333 (+)
ascl1a ascl1a,ascl1,LOC107590149,LOC107664850,LOC107596391,LOC107744950,LOC106576285 other upstream 198579 8874717 ~ 8890176 (+)
etnk1 etnk1,LOC107725541,LOC107659837,LOC107694683,LOC107590048,LOC107744908 other upstream 540753 8533816 ~ 8548002 (+)
spx spx,LOC107589995,LOC107744902,LOC107694690,LOC107596170,LOC107725633 other upstream 596817 8487911 ~ 8491938 (+)
stmp1 NA other upstream 604924 8482890 ~ 8483831 (+)
G27360 anks1b other downstream 64169 9163147 ~ 9227212 (+)
cfap54 cfap54,LOC107695893 other downstream 282564 9381542 ~ 9395757 (+)
wnt7ba wnt7ba,wnt7b,LOC107591249,LOC107695867,LOC107725526,LOC107732964,LOC107664847,LOC103028473 other downstream 405102 9504080 ~ 9522033 (+)
G27508 LOC107695901,LOC107725636,LOC107553882 other downstream 478337 9577315 ~ 9578574 (+)
G27490 NA other downstream 488341 9587319 ~ 9590318 (+)

Expression


Co-expression Network