LOC122343275


Basic Information

Item Value
gene id LOC122343275
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 11674000 ~ 11678670 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006250739.1
acagagagagagagagacagagagagagagacacagagagagagagacagagagagagagacacagagagagagagagagagagagagagagagagagagagaacatggaGGCGGCCTTTTATGTTTTCCGCTCTCATCCATAAACGTCCACTCATCCCGAGCGTGCACAGAGACGGGCGGCCGCTGCATCGCTTGCGAGAGGATTTAATGTGTGCAAATGGCggaggcaaaaacaaaaaggacgGATGGAAAGATTAATGATTAAGCTTTGTATGCGCCAGGTAGATGGAGACGAAGAGAGGCAGCTCTGTGGATCGGGGAAGGAGCTGGCGTTGACGGACGGCAAAAGACAGCTGCGAAAGCCAATCAGGGGCTTCCCTGCGCAAGTAACGTTTTAATCCTGGTCATAGGGGCTAAATATGTCACACTGACATACTTCCCCTGGAACAACAAACAGCGAGGCGACAAAGGAATTaaagtggtgtgtgtgtgtgtgtgtgtgttgtggtgaTAAGTGGGATTAGAGGAGGGGCCAGATGCTGGGACATACAGTCTACAGATGAAACCTAGATTTTGGAGAGACTGTTCAgatacaaaacagaaaacaggatAGAGGAATGCTAGCATTGTGGGGAAACCATCCATTCGAATGCAGCCGCTTTTCCTGCTCTCTCCGTACGGACTCGGTGCGGTACGGGAAGCTCCTCCCTCGCTACAGCGGTCAGGGAAACCCACAGCCTCATGTAGGAGCGTCAACACAtgttttctcctttctctccccgtttctctctctcacagccGCTTCCTCGGTTCGCGCTGGTCTGACTTCGAGCGGGGAGCGATGGAAATAGAGCAGGCTTTCCGAACGCTAGCACCGGCGGTGTGACTTCACACCATTCTCGCAGGCTGAGTCATCGCAGCCCACGCTACGCCGAGGCTTCACACAGCCACGTGCCTCAAAAACGCACGAGCGCGCAGCCGAGAGCTTTTCCCGACTGTCATTGATAAAGATGCACGAGGTCGTGTCACCTTGTTCGCGTCTTCTCCCGTGAGACCGATCCTGCCACGATCGCCGGCAGCTCTGGCTGCTGAGGGGACGAGGACACGAGTGTTCATTAGAGACGCTCGCTGCATTAAATCCAACGTCGGTGCCGCTTAGGCGATCAtaaaacaagccaaaaaaatGTCTCCGGTGGGCTCTTTTGACTTGGGCTAGTAAGCAAGGACCCTTCTTGGGCAGGTATCTCGGTATCTCTTGAACAAATGTTAATGAGGTTAATGGCTCTCGTGGCACACTGCCGAGGGACCTCCACCGTGATCAGAAAGGAGGCACCTGACAATCTCAAATTGAACAACAATGACCGATGACAAAATCTAAATCacgatttttttaatatctgttgAAATAAATAgcaagtgtttatttattaagatttttttgctcCAAAATGAAACCACACCGTTCACTTGACTTCAAATACATACAGATCTTGAAAAATGAGCATCTTTTATGCATATTCTAATCAGAGCGTgcgcaaaaatgctttttttgttaagCATTCGGCATTATCGGACTTATACGCTTGCCACAGCGAAGCTCAAAGCTACGATGCGCGGTTATTTTGTTTCGGTAAGGTTTCTGGATGGgtgctgtgtggttgctaacGTGTTTTTGGGTAGTGGCATACTGGca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006250739.1 True 1694 lncRNA 0.50 2 11674000 11678670

Neighbor

gene id symbol gene type direction distance location
lhfpl3 lhfpl3,LOC107680022,LOC107694191 coding upstream 21242 11618061 ~ 11652758 (+)
guca1a guca1a,LOC107590762,LOC107755893,LOC107590961 coding upstream 67429 11602201 ~ 11606571 (+)
llph llph,LOC107755886,LOC107590743,LOC107694185,LOC107680014 coding upstream 98763 11573747 ~ 11575237 (+)
myf6 LOC107755889,LOC107749082,LOC107694156,LOC107680015 coding upstream 347307 11324633 ~ 11326693 (+)
syt1a syt1a,LOC107560302,LOC107694178,LOC107734425,LOC107755909,LOC107590640,LOC107680026 coding upstream 517256 10998929 ~ 11156744 (+)
sema3c sema3c,LOC107694195,LOC107680038,LOC107710663,LOC107755880 coding downstream 62062 11740732 ~ 11783807 (+)
slc35e3 slc35e3,LOC107710682,LOC107737854 coding downstream 335916 12014586 ~ 12018965 (+)
mdm2 mdm2,LOC107590969,LOC107710681,LOC107692244,LOC107737846,LOC107694202 coding downstream 341951 12020621 ~ 12027468 (+)
LOC122342854 trhde,si:ch211-198g19.1,LOC107556776,LOC107666938,LOC107590972,LOC107710683,LOC107710667,LOC107669707,LOC107737852 coding downstream 395033 12073703 ~ 12147286 (+)
LOC122342787 si:ch211-198g19.1,si:ch211-149p5.1,trhde,LOC107590972,LOC107710683,LOC107556776 coding downstream 491457 12170127 ~ 12267756 (+)
G27836 kmt2e,LOC107590817,LOC107710662 non-coding upstream 19043 11653472 ~ 11654957 (+)
G27827 NA non-coding upstream 71965 11599745 ~ 11602035 (+)
G27826 NA non-coding upstream 75685 11597872 ~ 11598315 (+)
G27825 NA non-coding upstream 76297 11597295 ~ 11597703 (+)
G27805 LOC107590700,LOC107590977,LOC107694182,LOC107755902 non-coding upstream 229284 11443224 ~ 11444716 (+)
G27850 NA non-coding downstream 6213 11684883 ~ 11685136 (+)
G27851 NA non-coding downstream 7043 11685713 ~ 11688940 (+)
G27862 NA non-coding downstream 73998 11752668 ~ 11785852 (+)
G28077 NA non-coding downstream 306682 11985352 ~ 11986186 (+)
LOC122342766 NA non-coding downstream 311201 11989871 ~ 11991884 (+)
acss3 acss3,LOC107694183,LOC107755903,LOC107680029,LOC107749070,LOC107560301,LOC107590709 other upstream 257773 11386130 ~ 11416227 (+)
myf5 LOC107560306,LOC107680018,LOC107749081 other upstream 339544 11331545 ~ 11334456 (+)
LOC122342850 LOC107740709 other upstream 965053 10707132 ~ 10708947 (+)
zmp:0000000650 LOC107694155,LOC107589077,LOC107732968,LOC107680013,LOC107574990 other upstream 971797 10686097 ~ 10702203 (+)
rassf8b rassf8,rassf8b,LOC107590609,LOC107589039,LOC107738830 other upstream 998890 10662231 ~ 10675110 (+)
ndufb2 ndufb2,LOC107755897,LOC107578274,LOC107694192,LOC107590801,LOC107710676 other downstream 10644 11689314 ~ 11691129 (+)
gnai1 gnai1,LOC107590838,LOC100706147,LOC103382723,LOC106609493 other downstream 118312 11796982 ~ 11815305 (+)
kin kin,LOC102791470 other downstream 1472066 13150736 ~ 13154358 (+)
G28252 si:dkey-183c16.7,LOC107689220,LOC107755152 other downstream 1626999 13305669 ~ 13315684 (+)
G28249 LOC107689220,LOC107755152 other downstream 1644618 13323288 ~ 13530631 (+)

Expression


Co-expression Network