LOC122343307


Basic Information

Item Value
gene id LOC122343307
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 2439495 ~ 2454289 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006250753.1
GCTATATTGGATTTGTGGGTGTCCGGCGAACCTCGGTTGGTTTGGGCAGCTTGTCCCCCGATTGGAGGCCAGGTGCTTTCTCATCACGAGGGACATGGGAGCAGATTGTGCTGATAAAAGCCAGCGCGGTCCAGCGACCAGACGAGGCCAGAGCAGAGGTGGTCACCCTGCTGCCGTGCGATGCAGCCTTTGAAAATGCGATTCAGCTGTTCGCTCCTGTCCGCTCGCATTAATCTCTCGCATGAAGAGGAGAGATTCTGCGAAAAGACATGAGCTTGAAAGTCTTTTGTCCCCATCCACTTctattgtatggaaaagagcagcgtaatcattcttcaaaacatctcctttGTACAAggtttgaggAGCCCTGGTCTTTGGTCTCCATCCACGTCTGTTGAAAAGCACAGCACgatcattcttcaaaacatcttttgtgttcagatgGAAGAGCGTTACGTTTAACGGACCTGCGGACGCGGAATGCTTATCTGAGACCGAGAGGTTGTCAGCAGCAGGATTTTGCTTTCAGCTTTATCTTGAGTAGAGGTCCTGGCACAAACATGCTGCTGGAGCTCCATCCCAGAAGataagagagacagagatgcaTGCTGGGACAAGGAGCCACCAACACCTGCTTGGGGCAAACAGGTTTTTGACCTGAGAGAAGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006250753.1 True 672 lncRNA 0.51 4 2439495 2454289

Neighbor

gene id symbol gene type direction distance location
ifrd1 ifrd1,LOC107580056,LOC107726045,LOC107656357,LOC107658876,LOC107579159 coding upstream 45054 2388979 ~ 2394441 (+)
LOC122343453 LOC107710120,LOC107658877,LOC107726057,LOC107580024,LOC107656361,LOC107584004,LOC100535105 coding upstream 249747 2178532 ~ 2189748 (+)
utp20 utp20,LOC107658916,LOC107710084,LOC107656365,LOC107725898 coding upstream 417185 2001089 ~ 2022310 (+)
usp18 LOC107725967 coding upstream 445907 1990505 ~ 1993588 (+)
pex26 LOC107658896,LOC107583978,LOC107725950 coding upstream 449558 1987476 ~ 1989937 (+)
foxp2 foxp2 coding downstream 51657 2505946 ~ 2602501 (+)
mdfic mdfic,si:ch211-262n1.4,LOC107658868,LOC107656347,LOC107580133,LOC107584008 coding downstream 168250 2622539 ~ 2641837 (+)
elk3 elk3,LOC107743764 coding downstream 392985 2847274 ~ 2862389 (+)
si:ch1073-67j19.1 LOC107725978,LOC107743829,LOC107580374 coding downstream 453170 2907459 ~ 2908695 (+)
LOC122342536 NA coding downstream 457889 2912178 ~ 2913479 (+)
G25334 NA non-coding upstream 26911 2412063 ~ 2412584 (+)
G25332 NA non-coding upstream 28850 2408969 ~ 2410645 (+)
G25331 NA non-coding upstream 30558 2407571 ~ 2408937 (+)
G25330 NA non-coding upstream 34098 2405174 ~ 2405397 (+)
G25327 NA non-coding upstream 36821 2402445 ~ 2402674 (+)
LOC122342588 NA non-coding downstream 207825 2662114 ~ 2663045 (+)
LOC122342427 NA non-coding downstream 212053 2666342 ~ 2679743 (+)
LOC122342395 NA non-coding downstream 232135 2686424 ~ 2719361 (+)
LOC122343412 NA non-coding downstream 272513 2726802 ~ 2787657 (+)
LOC122343411 NA non-coding downstream 335789 2790078 ~ 2825789 (+)
lyrm5a LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994 other upstream 443959 1994240 ~ 1995536 (+)
LOC122342451 NA other upstream 651399 1784237 ~ 1788096 (+)
LOC122343488 NA other upstream 766536 1670512 ~ 1672959 (+)
LOC122342419 coa6,LOC107726010,LOC107583951,LOC107658937 other upstream 1107652 1329452 ~ 1331843 (+)
ndufa5 ndufa5,LOC107725958,LOC107658774,LOC107579922 other upstream 1148271 1288297 ~ 1291224 (+)
ninj2 ninj2,LOC107725989,LOC107584020,LOC107743858,LOC107656339,LOC107658851,LOC107581271 other downstream 645448 3099737 ~ 3117994 (+)
erc1b erc1,LOC107725987,LOC107656325,LOC107580227,LOC107743718 other downstream 665226 3119515 ~ 3306758 (+)
G25514 NA other downstream 1027340 3481629 ~ 3502094 (+)
G25551 NA other downstream 1283213 3737502 ~ 3738594 (+)
G25837 si:dkey-153k10.9,LOC107592247,LOC107658817,LOC107743973,LOC107656294,LOC107581279 other downstream 1775340 4229629 ~ 4231092 (+)

Expression


Co-expression Network