LOC122343380 (LOC107699369,LOC107730684,LOC107601011)


Basic Information

Item Value
gene id LOC122343380
gene name LOC107699369,LOC107730684,LOC107601011
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 15339618 ~ 15341504 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006250764.1
ATACAGACACTAATGAATGCACTGAAGATCCAGATCTGTGCAAAGAAAACCAATACTGCCTAAATACAGATGGTTCTTTCATATGTAaagaatgCAATACCGGATGCTTTGGTTGCAAAGGACCTGGTGCCAACAACTGCTTGAACTGTGCTGATGGTTATAAGGATGAAGAAGGCACTTGCACAGAAGAGAATAAGGAAGTGCCTGACTTTGATTCTGAAGGTTCGCAAACTGGTGACTCACCCAAAAAACATGAGGACCTCTGAAGTCATAATGCTTGAATGCAGAAAACACCCTCCAGGACACAATATTTGCCTATGGACCACTAGTGTCTGCAGTGTTTAAATACGGGTTGTTCTTCTGGAATAATCAAGAGTTAAAGGCACTTGCAGCAAATACTTAAACAGCACTATTTAATTTGTGGAACATGTTTTTGCAGTAGACGTGGTCAGCA

Function

NR:

description
PREDICTED: cysteine-rich with EGF-like domain protein 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006250764.1 True 454 lncRNA 0.41 3 15339618 15341504

Neighbor

gene id symbol gene type direction distance location
creld2 LOC107730684,LOC107699369,LOC107601011 coding upstream 181984 15149133 ~ 15157634 (+)
LOC122342621 zbed4,LOC107744591,LOC107663563,LOC107563622 coding upstream 196207 15136921 ~ 15143411 (+)
LOC122342863 cpne8,LOC107569221,LOC107666208,LOC108279828,LOC101886030,LOC108427072,LOC108244036 coding upstream 532252 14784476 ~ 14807366 (+)
LOC122342644 tbc1d22a,LOC107721154,LOC107689730 coding upstream 577646 14758492 ~ 14761972 (+)
LOC122342641 tbc1d22a,LOC107689730 coding upstream 585261 14725899 ~ 14754357 (+)
LOC122343379 ppm1j,LOC107668166,LOC107708158 coding downstream 758 15342262 ~ 15355555 (+)
nup50 nup50,LOC107699201,LOC107562145,LOC107687567,LOC107601009,LOC107719874 coding downstream 254157 15595661 ~ 15602006 (+)
LOC122342219 LOC107554691,LOC107656224 coding downstream 297008 15638512 ~ 15644874 (+)
LOC122342595 NA coding downstream 1033072 16374576 ~ 16377941 (+)
LOC122342597 rab3ip,LOC107709967,LOC107689177,LOC107757202,LOC107675141,LOC107554773 coding downstream 1037129 16378633 ~ 16398499 (+)
G28745 NA non-coding upstream 225090 15114111 ~ 15114528 (+)
LOC122342648 NA non-coding upstream 475518 14863033 ~ 14864100 (+)
G28726 NA non-coding upstream 484867 14834630 ~ 14854751 (+)
G28667 NA non-coding upstream 529957 14808597 ~ 14809661 (+)
G28503 NA non-coding upstream 1346787 13992023 ~ 13992831 (+)
G28797 NA non-coding downstream 32606 15374110 ~ 15374537 (+)
G28813 NA non-coding downstream 146572 15488076 ~ 15492182 (+)
G28882 NA non-coding downstream 383688 15725192 ~ 15725554 (+)
G28888 NA non-coding downstream 395964 15737468 ~ 15737762 (+)
G28889 NA non-coding downstream 413309 15754813 ~ 15755128 (+)
LOC122343376 LOC107699368,LOC107601007,LOC107733210,LOC105896948,LOC104933464 other upstream 125186 15157755 ~ 15214432 (+)
tafa5a fam19a5a,fam19a5,LOC107552289,LOC107689731,LOC107563619,LOC107721159,LOC106609108,LOC103356475 other upstream 856797 14400029 ~ 14482821 (+)
tbc1d22a tbc1d22a,LOC107689730,LOC107710738 other upstream 1045000 14177430 ~ 14294618 (+)
trmu trmu other upstream 1347846 13985517 ~ 13991772 (+)
LOC122342701 im:7143923,cpne8,LOC101886030,LOC107566841,LOC108279828,LOC107689738,LOC108427072,LOC103365370,LOC107666208,LOC102193326,LOC102297242 other upstream 1378520 13882894 ~ 13961098 (+)
LOC122342869 NA other downstream 71643 15413147 ~ 15420303 (+)
G28806 LOC107744205,LOC107601002,LOC107687568,LOC107699198 other downstream 97830 15439334 ~ 15555682 (+)
cdkn1d LOC107699204,LOC107719868,LOC107562144,LOC107601015,LOC107758204,LOC107687563 other downstream 223995 15565499 ~ 15655278 (+)
G28891 NA other downstream 499868 15841372 ~ 15841855 (+)
G28899 NA other downstream 643715 15985219 ~ 15985726 (+)

Expression


Co-expression Network