CI01000004_11547197_11557429 (CACNB2B)



Basic Information


Item Value
gene id CI01000004_11547197_11557429
gene name CACNB2B
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 11547197 ~ 11560552 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>CI01000004_11547197_11557429.mRNA
GGTTCGGCGGACCGTCAGGACTCAGGGGCCACTGAGGAGAAGGAGAAGAATGCCCAAGTCCAGCTCGAGAAGGCCAAGCAGTGTTTCAGTTCCAGCACCCTACTCAAAGTATCTGTCTGCTGTCATTCATGCGCTCACTCATACACAGCCTCATGAAGAGATTTATAAATATTCTCACCCATACATGTATAAGCCTGTTGCTTTCGCCGTTCGCACAAACTTCACCTACACTCCTGCAGATGATGACAACGTCCCCATACCAGGGCACGGGGTTTCCTTTGAAGCAAAAGACTTCCTACATATCAAAGAGGGAGAGCAACTGGCTGCATATGATGTTGTGCCTTCCATGCGTCCTGTGGTGCTCATGGGGCCTTCGCTCAAGGGCTATGAGGTTACGGACATGATGCAAAAAGCTCTCTTTGATTTTTTAAAACACAGATTTGAAGGAAGAATAACTATCACCCGGGTGACGGCAGATATTGCACTTGCCAAGCGGTCAATCCTCAACAACCCCAGCAAACACGCCATAATGGATCGCTCCAACACCCGCTCTAGTTTAGATGCCGCGGGTATGTATTACAGCAGTAGCCTGTCTATGTTCCCCCAACTCATTCCTGTTGGTGTCATCAGAACTGCTTTACCTCTTAGAGAACACTATAAGTGTCAAAGAACCCTGATACTTTTAGTGAAGGTCACTGCTCCTAAAAGCTTCGGCTTGTCCCAAATCCAAGGAGAGGTTGAGAGGATTTTTGAGTTAGCACGCAGCCTACAGCTTGTGGTTCTGGATGCCGACACCATTAACCACCCTCTCCAACTAAGCAAGACCTCCTTGGCCCCGATCCTGGTGTATGTCAAGATTTCATCACCTAAGGTTCTGACAAGATTGATAAAGACCAGGGGAAAATCTCAGACTAAACATTTGAATGTCCAGATGGTGGCCGCAGACAAACTGGCCCAGTGTCCTAATGAGCTGTTCGATGTCATTTTGGATGAAAACCAGCTGTCAGATGCCTGTGAACACATCGCTGATTACCTGGAGGCCTACTGGAGAGCCACACACCCTCCTGAAATGGAACCTCCCAACCCCATGCTGGAGAAACTGGCAGAAAACACACTCCCTACCAGCCCCACACCTGCTAAGGTACTGGACACACTCGGAGAAGAACAGGAAATGAAGTACTGAGATTGAACATTTACTGTATAGATAGAGCCTATGGCGAAAACCATTCAAAACAACTTCAGAAATATTCTTTAGACATATACTTTGTTTGGTTGCTTAACAAAACATTTTTGGCCCTTTGGACATTT
>TU35904
GTTTTTTTTTTTTTTTTTATTAAAGTTTGCTCAATTTGGAGCAAAGAGCAAGTTTTAAACCTTCATTGTTCTGTTACTTCCTGTGGATGAGGAACTGTTGTGTCAGCATAATTTGATCATCTCTATTTTCAAAGACATATTGCATGACCTGTGTATGGAATGTGTTTAGTTTTAAAGATGGGACTTTCACCTATACGCTTTTCTTCAGTTCTAAAACATCATGAAATGGTGCAAAAAACTTCTATTTCTTCTTTTCTTTCTACTTATATTAGTGGAACTGGACATAAAAAGCTTCCCATCCCATTACATTTTAAGTGCTTTTGGCTGCAATTCAGCAGATTTGTACTTTGATAGAATAATATTTTTTGAAGATCTCATATATAAGGATTTTTAGGTTGAATAGCCTCATTTATTTATTTCTCTGTCCCTACAGCCCAAATCCAAGGAGAGGTTGAGAGGATTTTTGAGTTAGCACGCAGCCTACAGCTTGTGGTTCTGGATGCCGACACCATTAACCACCCTCTCCAACTAAGCAAGACCTCCTTGGCCCCGATCCTGGTGTATGTCAAGATTTCATCACCTAAGGTTCTGACAAGATTGATAAAGACCAGGGGAAAATCTCAGACTAAACATTTGAATGTCCAGATGGTGGCCGCAGACAAACTGGCCCAGTGTCCTAATGAGCTGTTCGATGTCATTTTGGATGAAAACCAGCTGTCAGATGCCTGTGAACACATCGCTGATTACCTGGAGGCCTACTGGAGAGCCACACACCCTCCTGAAATGGAACCTCCCAACCCCATGCTGGAGAAACTGGCAGAAAACACACTCCCTACCAGCCCCACACCTGCTAAGGTACTGGACACACTCGGAGAAGAACAGGAAATGAAGTACTGAGATTGAACATTTACTGTATAGATAGAGCCTATGGCGAAAACCATTCAAAACAACTTCAGAAATATTCTTTAGACATATACTTTGTTTGGTTGCTTAACAAAACATTTTTGGCCCTTTGGACATTTATAAAATGAACCACTTTAAAACACCTTTCATACTCTCACCAGTTTGATTTGTCCTTAGGACAGTGTTTTAGACAGTCTAAATATATACACTACCATTTAAAAGTTTGGGGATGGTAATTTTTTAAGTGTTTTTGAAAGAAGTCCCTTATCACCAAGGCTGCATTTATTTGATCAAAAATACAGCAAAAACAGCAATATTGTGAAATATTATTACAATTTAAAATAACTTTTCTTTTTTAATGCACGATATATCGGCCACAATATCGGTATCAGCCGATATATGTTCATTTTTAATGTTATCGTTATTGGCCCGATAAGAAAATTTGGCCGATATATTAAAGCCGATAAAAGATAGATTATTTCCTTCAGCTGCGCACTGTTTGCAATTATGGTTTTGAATTGCTTGAAATATGATTGAAATTACTTCAAAAAGAAAAATACAATTAAGTGCAACATGTTCAGCGCAAGTCTGTCATATAGGCTTCATAAAATTATAATGTGAACATTATAATTGTGTGCTTGGGACATGGCTTTTAATGGTGAGACTTTTGTTTTTGTAATCAGGCTTTCAAAAAGTATATAAAAATTTGGATTTAGATTTATCGGCCAATATATCAGTTATCGGCTTTCAAATATAAAGAATTATCAGTTAAATTTTGTATTAGCCAAAATTTTCATGTCGGTGCATCCCTAATTTTAAGTAATGTATTCCTGTGATGGCAAAGCTGAATTTTCAGCATCATTACTCCAGTCTTCAGTGTCACATGATCCTTCAGAAATGATACTAATATGCTGATCTGGTGCTCAAGAAACATTTCTTATTATTATCAATGTTCAAACAGTTGTGCCGCTTAATATTTTTGTGGAATTTTTTGATGAATAGAAAGTTCAAAAGAACAGCATTTATTTGAAATAGACATCTTTTGTACTGCTGATGCCAAACTTTTGAAAGGTAGTGTACATATATTCATAAAATCATAAATGGTGTCATTTCCACCACATCTTCCATTATGTATTGTGTAGCATTCTGTAATAAAATCTCAGACTCTTTTGTCTTATCTCATTTAAAGGCTGATCTCATTGCTAGCATTTTATGTATCCTAAATACACACAATTAAATAAGATTTTCACATAATTATAGTACTATTTTCTAATTAATGTCTCTTGTCCTTCAGGTTTATCCACATTCTTGCAGATTTTATTAGATTTTGTTTACTCATTCGTTCTTCTATGCAAGTCCTAAATTATGACTGTTTGGAAACATCTGCAGGCTCCATAAAGTCTGAAATTTTGCTTAGTGGTGTGTCATTCTGTGACATTTTCAATTTCCTCCCTACCTCTTACTAAACTCTCTTGGACATTTAAAGAAGACTTGAGCTTAAAGGACCTTCGGTGAGTGAGATGGTGGTCTCTGAGGTAAAATGCCTTTAGTGTCAGTACCTACTAGTTTGTTCTACTTCTTTGTATTAGTAATAGCTTATTAGGTGTTGTAAGTAAACTTTATAGTACAGCAGTTTAGTGCCATTTTTGTAGTTCAGTGTCTTTGCATTTTTATTAGGCAAATTATTTGGTTTTACATTAGGGTTTACTTAGGAATTTGTGAAACTACTACATATTTCAATAAACGACTAGTCGGTGGTGATGTCTGAATAATTTGTTTACTGGTAGGCGTAGGCCTGTATAATTAAGCCCTGGGACAGCTCTCCTGTCCTCATGTTGAGAAAAATCATGACTGTGAATAAGGTGCAGAGGTGTTGTGTGTGCTGTGTAAACTTTTGTTTTTTGTTATTAAAAAACAAACAAGCAAGCCCAGCCCAGGTGAGAAAAAGTCATGCAAAAGTAACAACATTTCTTTCCTAAAAAGTAATGCTTTTTTATGGAGTAACACAATATTGTAACGCATTACTTTTAATAGTAACTTTCCCCAACACTGCTTGGTAGACACTTCTATCCTCAGTGACCTACATTGCATAAAAGGTACACATTTGATCACATTTGATGTTCTTGCTTTCCCTGGGAATCAAACCCATGACTTTGGCATTGCTAGTTCCATGCTGTACTGTTTGAACCAAGGAAAGTTCTGTTCATTGCTTCCTGTAAGAATATTTTAATTCTAGTCAGTATCTGATTAGAAAAAATCTGTGTAGTGAAGGATGATTCATTAACATAGAGTGCAGCAGTTAGTTAAAGAGATATAAACCAGGAACCAAACCAACCATCTACAAGATGAATCACAAGTTTACAAACTTGGATTTGAAGCAAAAAAGTATTTGAAAGGAAAGTATTTGATAGTTCAGGGAAGAAGGAGGCGGGAACCGGCGAACGTTCCGAAGTAACTTTAATCATAAAATAAACAAACAACAAAACAAAAGTAAAGCAGCAGCCTCTCACGGATGACTGCTGCATAAAAACATAATAAAACACAACATAAATAGTCCAGGCCTGGTCCTCTCTCGTCCTTCACTGTCGTCGCTCCTCCTTTTATCCTCCCGGAACTCCTCCGTGAGACTCGAGGCCTGTGTGGCGTGCAGGTGGCGCTCATTAGCAATCGCACCACCGGCCACGCTCTGTTCCCGCAGCTCTTGGCCTCTCCCTGCTTGCTACATACCCCCATTGCCCCTCACAGGCTGGGGGTACCCTCAAGACTTCGCAAACCCCCTCTAGGAGGGGAGCCCATCAGGGTGGCCACAGCTCCTGGTGGTAAGGACAGATGAGGTGAGAGAATAGGAGACTGAAGGATGAGGAGAGACAGAGATGAGAGAGGAAAAGAAAAAAATCTTGGTCCAGTTCCCAGACACACTGCATCTCGGTCCTCAACCCATTCCCTCGGTCTGCCTGCTCCTCCCCATCATGGCAGACGGCAGCAGGCCTGGCCTCCGGCGAATGGCGGCAAATCATCCATTCCCTTACGGATGGCAGCCACCACTCCTCAACCCAGGAGTACGGCAACAAGCACTCCGACCCACCAGTTGGTCAATCGCTGCAGCACCACCGCCTT

Function


symbol description
cacnb2b Predicted to enable high voltage-gated calcium channel activity. Predicted to be involved in chemical synaptic transmission; neuromuscular junction development; and regulation of voltage-gated calcium channel activity. Predicted to act upstream of or within calcium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated calcium channel complex. Is expressed in several structures, including heart; integument; liver; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Brugada syndrome 4; hypertension; and hypertrophic cardiomyopathy. Orthologous to human CACNB2 (calcium voltage-gated channel auxiliary subunit beta 2).

GO:

id name namespace
GO:0008331 high voltage-gated calcium channel activity molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
CI01000004_11547197_11557429.mRNA False 1308 mRNA 0.47 10 11547197 11557554
TU35904 True 4020 lncRNA 0.38 3 11554592 11560552
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Neighbor


gene id symbol gene type direction distance location
CI01000004_11520078_11522835 NA coding upstream 24104 11519927 ~ 11523093 (+)
CI01000004_11505808_11516796 STAM coding upstream 29015 11505808 ~ 11518182 (+)
CI01000004_11489380_11502517 COLEC12 coding upstream 44329 11489380 ~ 11502868 (+)
CI01000004_11432849_11451784 MGC115231, YES1.L, YES1 coding upstream 94206 11432849 ~ 11452991 (+)
CI01000004_11215878_11229028 LIPIN2, LPIN2 coding upstream 318075 11215682 ~ 11229122 (+)
CI01000004_11592217_11595358 NA coding downstream 34663 11592217 ~ 11595358 (+)
CI01000004_11598169_11606266 MALRD1 coding downstream 40615 11598169 ~ 11606283 (+)
CI01000004_11608619_11618346 MALRD1 coding downstream 51065 11608619 ~ 11618427 (+)
CI01000004_11622516_11634475 NA coding downstream 64962 11622516 ~ 11634925 (+)
CI01000004_11666900_11667179 NA coding downstream 109346 11666900 ~ 11667659 (+)
G31677 NA non-coding upstream 80826 11466036 ~ 11466371 (+)
G31665 NA non-coding upstream 140292 11406674 ~ 11406905 (+)
G31664 NA non-coding upstream 140586 11406286 ~ 11406611 (+)
G31663 NA non-coding upstream 140932 11405919 ~ 11406265 (+)
G31662 NA non-coding upstream 141441 11405164 ~ 11405756 (+)
G31721 NA non-coding downstream 135301 11692855 ~ 11694150 (+)
G31723 NA non-coding downstream 136833 11694387 ~ 11696280 (+)
G31727 NA non-coding downstream 149030 11706584 ~ 11706970 (+)
G31737 NA non-coding downstream 190971 11748525 ~ 11748761 (+)
G31625 NA non-coding downstream 233443 11790997 ~ 11803727 (+)
G30797 NA other upstream 1049409 10497376 ~ 10497788 (+)
CI01000004_08976512_08980033 TTPA other upstream 2566213 8976254 ~ 8980984 (+)
G28859 NA other upstream 2947594 8599235 ~ 8599603 (+)
CI01000004_08414451_08436256 NA other upstream 3095970 8414316 ~ 8439933 (+)
CI01000004_07654234_07655677 MRPL34 other upstream 3890814 7654234 ~ 7656383 (+)
G31710 NA other downstream 79697 11637251 ~ 11642400 (+)
G31865 NA other downstream 634576 12192130 ~ 12197418 (+)
CI01000004_12646972_12652534 NA other downstream 1085200 12646838 ~ 12652570 (+)
CI01000004_14036114_14036449 KIAA0040 other downstream 2465993 14035393 ~ 14039142 (+)

Expression


CI01000004_11547197_11557429(CACNB2B) Expression in PRJCA010000

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
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CI01000004_11547197_11557429(CACNB2B) Expression in each Bioproject

Bar chart with 44 bars.
CI01000004_11547197_11557429(CACNB2B) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015553 cacnb2b coding NC_007113.7 CM002886.2 31475772 ~ 31519662 (+)