Item | Value |
---|---|
gene id | CI01000004_11547197_11557429 |
gene name | CACNB2B |
gene type | misc |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000004 |
NCBI id | null |
chromosome length | 17451736 |
location | 11547197 ~ 11560552 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
symbol | description |
---|---|
cacnb2b | Predicted to enable high voltage-gated calcium channel activity. Predicted to be involved in chemical synaptic transmission; neuromuscular junction development; and regulation of voltage-gated calcium channel activity. Predicted to act upstream of or within calcium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated calcium channel complex. Is expressed in several structures, including heart; integument; liver; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Brugada syndrome 4; hypertension; and hypertrophic cardiomyopathy. Orthologous to human CACNB2 (calcium voltage-gated channel auxiliary subunit beta 2). |
id | name | namespace |
---|---|---|
GO:0008331 | high voltage-gated calcium channel activity | molecular_function |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
CI01000004_11547197_11557429.mRNA | False | 1308 | mRNA | 0.47 | 10 | 11547197 | 11557554 |
TU35904 | True | 4020 | lncRNA | 0.38 | 3 | 11554592 | 11560552 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000004_11520078_11522835 | NA | coding | upstream | 24104 | 11519927 ~ 11523093 (+) |
CI01000004_11505808_11516796 | STAM | coding | upstream | 29015 | 11505808 ~ 11518182 (+) |
CI01000004_11489380_11502517 | COLEC12 | coding | upstream | 44329 | 11489380 ~ 11502868 (+) |
CI01000004_11432849_11451784 | MGC115231, YES1.L, YES1 | coding | upstream | 94206 | 11432849 ~ 11452991 (+) |
CI01000004_11215878_11229028 | LIPIN2, LPIN2 | coding | upstream | 318075 | 11215682 ~ 11229122 (+) |
CI01000004_11592217_11595358 | NA | coding | downstream | 34663 | 11592217 ~ 11595358 (+) |
CI01000004_11598169_11606266 | MALRD1 | coding | downstream | 40615 | 11598169 ~ 11606283 (+) |
CI01000004_11608619_11618346 | MALRD1 | coding | downstream | 51065 | 11608619 ~ 11618427 (+) |
CI01000004_11622516_11634475 | NA | coding | downstream | 64962 | 11622516 ~ 11634925 (+) |
CI01000004_11666900_11667179 | NA | coding | downstream | 109346 | 11666900 ~ 11667659 (+) |
G31677 | NA | non-coding | upstream | 80826 | 11466036 ~ 11466371 (+) |
G31665 | NA | non-coding | upstream | 140292 | 11406674 ~ 11406905 (+) |
G31664 | NA | non-coding | upstream | 140586 | 11406286 ~ 11406611 (+) |
G31663 | NA | non-coding | upstream | 140932 | 11405919 ~ 11406265 (+) |
G31662 | NA | non-coding | upstream | 141441 | 11405164 ~ 11405756 (+) |
G31721 | NA | non-coding | downstream | 135301 | 11692855 ~ 11694150 (+) |
G31723 | NA | non-coding | downstream | 136833 | 11694387 ~ 11696280 (+) |
G31727 | NA | non-coding | downstream | 149030 | 11706584 ~ 11706970 (+) |
G31737 | NA | non-coding | downstream | 190971 | 11748525 ~ 11748761 (+) |
G31625 | NA | non-coding | downstream | 233443 | 11790997 ~ 11803727 (+) |
G30797 | NA | other | upstream | 1049409 | 10497376 ~ 10497788 (+) |
CI01000004_08976512_08980033 | TTPA | other | upstream | 2566213 | 8976254 ~ 8980984 (+) |
G28859 | NA | other | upstream | 2947594 | 8599235 ~ 8599603 (+) |
CI01000004_08414451_08436256 | NA | other | upstream | 3095970 | 8414316 ~ 8439933 (+) |
CI01000004_07654234_07655677 | MRPL34 | other | upstream | 3890814 | 7654234 ~ 7656383 (+) |
G31710 | NA | other | downstream | 79697 | 11637251 ~ 11642400 (+) |
G31865 | NA | other | downstream | 634576 | 12192130 ~ 12197418 (+) |
CI01000004_12646972_12652534 | NA | other | downstream | 1085200 | 12646838 ~ 12652570 (+) |
CI01000004_14036114_14036449 | KIAA0040 | other | downstream | 2465993 | 14035393 ~ 14039142 (+) |
species | gene id | symbol | gene type | chromosome | NCBI id | location |
---|---|---|---|---|---|---|
zebrafish (Danio rerio) | XLOC_015553 | cacnb2b | coding | NC_007113.7 | CM002886.2 | 31475772 ~ 31519662 (+) |