LOC122343393 (si:dkey-234i14.9,igl4v8,LOC107687028)


Basic Information

Item Value
gene id LOC122343393
gene name si:dkey-234i14.9,igl4v8,LOC107687028
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 3447058 ~ 3447574 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>unassigned_transcript_300
gcagaacacaacacaatcttcatcatcacacaagactcaactactacaatgaacaacatcctcatcctcatctggactcTGACTCTCTGTATTCAGGAGATCTGGGGACAAGTGACAGTGACTCAGAATCCAGAAGTAAAATCCATCAAACAAGGAGAAACTGTTACAATCAGCTGTAAAACCAGTCAGCCGATTTCTGGCTGTAGTGACTGTGTGTCTTGGTATcagcagaaacctggagaagctcctaaactcctcatTTATTGCATAAGAAGCCTTTAttcaggaactccatctagattcagtggaagtggatcaAACTAtggaagtgatttctctctgaccatcagtggagtccagactgaagatacaggagattattactgtcagagttatCACTACATCAACAGTAAAgctgtgttcacacagtga

Function

symbol description
igl4v8 Predicted to be involved in immune response. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space.

NR:

description
immunoglobulin kappa variable 6-21

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_300 True 432 V_gene_segment 0.50 2 3447058 3447574

Neighbor

gene id symbol gene type direction distance location
LOC122342760 wnt5b,LOC107656325,LOC107572035,LOC107726030,LOC107658849,LOC107580320 coding upstream 65886 3311653 ~ 3381172 (+)
optn optn,LOC107726056,LOC107658854,LOC107656330,LOC107743880,LOC107580275 coding upstream 434954 3006873 ~ 3012104 (+)
camk1da camk1da,LOC107726013,LOC107743755,LOC107658855,LOC108428135,LOC108279878,LOC107656221 coding upstream 452559 2943924 ~ 2994499 (+)
cdc123 cdc123,LOC107658858,LOC107726014,LOC107656335 coding upstream 505461 2938072 ~ 2941597 (+)
ucmaa ucmaa,ucma,LOC107658769,LOC107581267,LOC107656340 coding upstream 519960 2923221 ~ 2927098 (+)
LOC122342820 LOC107679839,LOC107717989,LOC107699428 coding downstream 132054 3579628 ~ 3601006 (+)
LOC122343370 wnt5b,LOC107656325,LOC107580320,LOC107726030,LOC107572035 coding downstream 213043 3660617 ~ 3675293 (+)
adipor2 adipor2,LOC107658846,LOC107726009,LOC107743774,LOC107656334 coding downstream 230671 3678245 ~ 3701214 (+)
sult4a1 sult4a1,LOC107658835,LOC107592236,LOC107726066,LOC107580464 coding downstream 313010 3760584 ~ 3769843 (+)
samm50l samm50,samm50l,LOC107725949,LOC107592232,LOC107658828,LOC107656318,LOC107580535 coding downstream 441863 3889437 ~ 3895875 (+)
LOC122342809 NA non-coding upstream 5558 3440912 ~ 3441500 (+)
LOC122342808 NA non-coding upstream 7404 3439131 ~ 3439654 (+)
G25502 LOC107573038 non-coding upstream 12596 3409001 ~ 3434462 (+)
G25504 NA non-coding upstream 17912 3420636 ~ 3429146 (+)
G25455 wnk1,wnk1b,LOC107725976,LOC107658853 non-coding upstream 416166 2935162 ~ 3030892 (+)
LOC122343352 NA non-coding downstream 22792 3470366 ~ 3471135 (+)
G25523 foxp2,LOC107725896 non-coding downstream 98548 3546122 ~ 3547509 (+)
G25534 NA non-coding downstream 253854 3701428 ~ 3701754 (+)
G25535 NA non-coding downstream 254260 3701834 ~ 3702371 (+)
G25536 NA non-coding downstream 259285 3706859 ~ 3707064 (+)
erc1b erc1,LOC107725987,LOC107656325,LOC107580227,LOC107743718 other upstream 140300 3119515 ~ 3306758 (+)
ninj2 ninj2,LOC107725989,LOC107584020,LOC107743858,LOC107656339,LOC107658851,LOC107581271 other upstream 329064 3099737 ~ 3117994 (+)
lyrm5a LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994 other upstream 1451522 1994240 ~ 1995536 (+)
LOC122342451 NA other upstream 1658962 1784237 ~ 1788096 (+)
LOC122343488 NA other upstream 1774099 1670512 ~ 1672959 (+)
G25514 NA other downstream 34055 3481629 ~ 3502094 (+)
G25551 NA other downstream 289928 3737502 ~ 3738594 (+)
G25837 si:dkey-153k10.9,LOC107592247,LOC107658817,LOC107743973,LOC107656294,LOC107581279 other downstream 782055 4229629 ~ 4231092 (+)
G25838 si:dkey-153k10.9,LOC100147981,LOC107743973,LOC107656294,LOC107725885,LOC107592247 other downstream 785334 4232908 ~ 4235244 (+)
G25958 NA other downstream 1102589 4550163 ~ 4628899 (+)

Expression


Co-expression Network