CI01000004_11598169_11606266 (MALRD1)


Basic Information

Item Value
gene id CI01000004_11598169_11606266
gene name MALRD1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 11598169 ~ 11606283 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_11598169_11606266.mRNA
CTCCAGTGTTGACTGGAGCTGGACCTCTGGAACCAGTACTGATTCATTTGCCCCCAAGGTCGACCACACCACAAACAGTGCCATGGGTAAATATCAACATATTACTTAATGCTGTATGTACACCAGGACATTACATGACATTTGACACAAGTAGCACATCAAATCAGATTGCTCATCTTGAGAGTGAGATGATGGAGACTGAATCTCAAGGATGTTTGGAGTTCTGGCTACACATGCATATGTGGATCTTTGACAAGCTCACATTGGCAATTTATGTAAATGAGTCCGGTTCTCTACGCCGTCTGTGGAATCAAACTGGCGATCATCAGAATGTGTGGCACCATGTCACTGTAGACTACCAATCATCTGAACGACACCAGATTGTGTTTGAAGCTGTGCGCCGACTCTTCGACTCAGGAGTCATTGCTTTGGATGACATCTACATTAGGAGGAACACACGCTGCTCTGACCTGATTCCGACAACACCAGCACCCACAACCGAGCCCACCTCTCCACCCACGTCCTCCATGGACTGCAACTTTCAGGAGGGGCTATGCGACTGGATCCAGGAGACAGATGATGGATTTGATTGGATCCACCAAGTGGGTGGAAAGGTGAATGAACCATGGCTAGGACCTTTATATGACCACACGTTAAAAAATGACAATGGGTTTTATCTCATTATAAATATGTCTGGAGAACATGAAACCAGTGAGACAGCAGTCATTTCAGTGCCGATGATAATTCAGAGCACTGATGTCTGCATTGGATTCTGGTACTACATGTTAGGACCATCTCTTGGAAACTTAGATCTGCTTATTGAGACGGTAAAGTTTTTAGGGAGCAGAACAGCAGGAGGCAGCGGCTTCATAGCCATTGATGACTTCAGAGTGACTGCAGGAGCCTGTGTGGAAAACAACCCATGTGGATTTGAGTCTCCCTTGCTGTGTGGCTTTGAACCCGATGTGACTGACAGCAATATCTGGCTCCGTGAGGATGGCAGCAGTGGCCGTACTGACCATACGTACAGAACTGAAACTGGCCATTTAATGGCTGTGCTTGGGTCCAATCTTCAGAAACCAGAGGTTTCAAATCTTCTGACACCAGAGTATAGCCCATCTACAGAGTCCTGCGTGCAGTTCTGGTATAGGCTGTCTGCAGGCTCAGGTGATTCGCTCTCAGTGCATGTTCTTCTGAATGGGGAGCTGGGTCCAGCTCTCTGGTCTCTGTCTGGAACGACTTCTGATAGTTGGGAGGTAGCAGAGGTCACTGTGTCATCTCCTTCCAAATTCAGAGTGGCGTTCAGAGCAGAGCTCAGTCCAAACTCTGAGTCATTTGTTCTTCTGGATGATGTCTCAGTTAAAACTGGAGCTTGTTCCCCAGCAGGAAGTTGTGATTTTGAGTCAGGGGAGTGTACATGGATAAATGTTGCTAATGGAGTCACAGATGAACATGACTGGATTCTTGCAGACGGTCACTACAGAGGTCCCCCTATCGATTACACTACTCACACTGCAGATGGCAAATTTCTGTTGAGCCAATCTCAGAGGAACAGCCAAGGCCAAAAAAGCAGTTCTTTGCTGACCTCTGAAAGGATCCGGCTGACCGGTGACTCCTGTTTTGAGTTCTGGTACCATATAAATGGAAGTGACCCTGGGATCCTTAGAGTGCTATTAGATTCAGAAGCAACAGACCAAGAACTGCTGTTTGAAACACGGGTCACTGGGAGCAACTGGGAAAATGTCTCCATCACTGTGTCTGAGACCAAACCCTTTCAGATTCACATAGAGGCTCAAACAGGCAGTGAAGGATACATCGCAGTGGATGATATTAGATTGACAAATGAGCCATGTAAAGACATCACCGTGGAAAGTGGAGTGTTTGTTGGGTGCGACTTTGAGACAGACACTTGTGAATGGAAAGATATCAGTGTTGGGCAGTTTGTTTGGGAGCGGGACCAGAATGGTACAACCTCCGCCAACACTGGCCCATCAGTGGACCACACTACTGGCACAGAGCTGGGTAAAATATTTTAGAGAACAACTAACCTGGA

Function

symbol description
malrd1 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human MALRD1 (MAM and LDL receptor class A domain containing 1).

NR:

description
Wu:fb63a08 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_11598169_11606266.mRNA True 2053 mRNA 0.47 15 11598169 11606283

Neighbor

gene id symbol gene type direction distance location
CI01000004_11592217_11595358 NA coding upstream 2811 11592217 ~ 11595358 (+)
CI01000004_11547197_11557429 CACNB2B coding upstream 40615 11547197 ~ 11560552 (+)
CI01000004_11520078_11522835 NA coding upstream 75076 11519927 ~ 11523093 (+)
CI01000004_11505808_11516796 STAM coding upstream 79987 11505808 ~ 11518182 (+)
CI01000004_11489380_11502517 COLEC12 coding upstream 95301 11489380 ~ 11502868 (+)
CI01000004_11608619_11618346 MALRD1 coding downstream 2336 11608619 ~ 11618427 (+)
CI01000004_11622516_11634475 NA coding downstream 16233 11622516 ~ 11634925 (+)
CI01000004_11666900_11667179 NA coding downstream 60617 11666900 ~ 11667659 (+)
CI01000004_11668089_11670426 ACKR4A coding downstream 61420 11667703 ~ 11670922 (+)
CI01000004_11747225_11747971 RNF182 coding downstream 140253 11746536 ~ 11748095 (+)
G31690 NA non-coding upstream 32014 11515811 ~ 11566155 (+)
G31677 NA non-coding upstream 131798 11466036 ~ 11466371 (+)
G31665 NA non-coding upstream 191264 11406674 ~ 11406905 (+)
G31664 NA non-coding upstream 191558 11406286 ~ 11406611 (+)
G31721 NA non-coding downstream 86572 11692855 ~ 11694150 (+)
G31723 NA non-coding downstream 88104 11694387 ~ 11696280 (+)
G31727 NA non-coding downstream 100301 11706584 ~ 11706970 (+)
G31737 NA non-coding downstream 142242 11748525 ~ 11748761 (+)
G31625 NA non-coding downstream 184714 11790997 ~ 11803727 (+)
G30797 NA other upstream 1100381 10497376 ~ 10497788 (+)
CI01000004_08976512_08980033 TTPA other upstream 2617185 8976254 ~ 8980984 (+)
G28859 NA other upstream 2998566 8599235 ~ 8599603 (+)
CI01000004_08414451_08436256 NA other upstream 3146942 8414316 ~ 8439933 (+)
CI01000004_07654234_07655677 MRPL34 other upstream 3941786 7654234 ~ 7656383 (+)
G31710 NA other downstream 30968 11637251 ~ 11642400 (+)
G31865 NA other downstream 585847 12192130 ~ 12197418 (+)
CI01000004_12646972_12652534 NA other downstream 1036471 12646838 ~ 12652570 (+)
CI01000004_14036114_14036449 KIAA0040 other downstream 2417264 14035393 ~ 14039142 (+)

Expression


Co-expression Network