CI01000004_11622516_11634475



Basic Information


Item Value
gene id CI01000004_11622516_11634475
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 11622516 ~ 11634925 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>CI01000004_11622516_11634475.mRNA
ATGGCACTACCGGCAGGACCACATATTTTCTTCGGGATTTTCGCATTTATTCAGGTTAAATCTACCATTCAGGAATTGCCATCTAATGGTGTCTCTTACTTCACCTTTGAGAGGCTCTCCAAGCAAGAGAGTGCTGGTGTAAACCTCAAGCTTTACAATAAAAGATGGAGGAGATGGATGCTCTCGTCCAAATCTGTGGATGAGATCAATCAGAACCAGGATCTGGAGCGCTATGAAGAGCACAGCAGATTAGATTCAGAGCGCTTTCCTGAAGTTGTGACAAATGACAGTCATGACAACTTATCCATTAAGAGAGATATGGATCATGTCTACTACACATCCAAATTCTATGGGCCCACAGACAGTGCAGGCAAGGATTTGTGGGTAAATATTGAGCAAATGAACATGGGAACAGTTCATGAAATTCTCTCCAACACACATCGACAAACTTTGGTACGTCAGCTACAAAGTTTTCTTAAGAGAGTGAATCTGTCCTTCGATTTCCCTTTCTATGGACATTCATTAAGGGAAATACATGTAGCGACAGGGGGTTTCATCTACACTGGAGAAGTTATCCACAAAATGCTGACTGCTACTCAGTACATCGCTCCTCTTATGGCTAATTTTGACCTCAGCATCTCACAGAATTCAACAGTCATGTACTGTGATAATGGCACAGCTCTTGTTGTGCAGTGGGACCATGTGTATCTCCAGGATGCATTTCATCTCAGCAGTTTCACCTTCCAGGCAGCTTTATACAACGATGGAAGAATCACCTTTGCATATAAAGAGGTTCCCACTGACATTAGTAAGATCAGCTCAGTGAATCATCCCGTTAAAGTCGGGCTCTCTGATGCATTTGTGGTCCTTCATAAGATTGAACAGCTTCCCAATGTTAGAAGAAGAACAATATATGAATATCATCGGGTAGAGCTCTTAAAATCCAAGATCATGACCGGCACTGGTGTTGAGATGCTTCCTCTACCAATACATTTAATCACATATTGTGAGAAAGCAGAAAGTAGTACCCATGTCTTTCACATCTTTGTTAAAACGTTGCTCCTCCTGCTGTCAGCCTGCCTTCAGTTCTCCAGCTGTGAGATGTGTGTTACGGCTCAGATCGGATTCAACTGTAGCTGGTGTAGTCGCTTACAGAGTCTACCATACCCCATTTTTACTGACTTGTTGTGGATGTATTTTAAGATAAAGCACCAGAACTGTAACAGGAAACAGCCCATCATTAGAAGCAGCACTCCAGCAGTGCAGACAGGAGTCACAGTAGTATCTATAACCACAACAACATCAACCACATCAGCCTTCACACTCACCACCAAGCTCACCAGCACACCCTTATTGATAAGAAACCTTCCTACCAGCTTCCTCACTGATGACTCTCAGATGGAAATTACAGAGAAACAGCGAGAGGAGCAGATGCAGACTGGTCTGCTCATTGGCATCCTCGTAACCATGGTCCTCATGGTGGTTGCTGTGTTGGCCACTATATACATGTACTACCATCCCACTTCCAGTGCCAGTCTCTTCTTTATAGAGAGACGACCAACACACTGGCCTGCCATGAAATTTCGACGTGGTTCAGGACATCCGTCATATGCAGAGGTAGAGGCAATGGGACAAGACAAAGAAGGATTCATCATGATGGAACCTAGAGACAGTTTTCTTGTGTCAGACAGGAGAGAGAGCTTGTTTCTGACGGACCAGAGGGAAGGATTTATTGTAGCTGACCAAAGAGAACGTTTCCTCATCATGGAGCGGCGCTAATGTGAATTCTGTGGTTTATGAATTAGTTCCTCTGTTTTTGAGAGGAAGTTGCACTGGTTGCTGGGATAAATGTGGTATTTGTTTAACCTTATAGCAGGGAGTGCTACAAATGTGAGAGATCTATTGCACCATCACACCAAAGTGCAATGTAAACAATGTGGACACATAAATGTTTTTCCAACCCAGTGACGCCAATGGAATTGCAGTGCTCAGGAGAAACATTCACATTTGAGCTTTTCATTTTTCTCTAAAGGGCTCCTTCTTTACCAGGGCCTGATCATGTTCCTGGGATTTGCTCTTGTTGGTGCCCCACTTCAAACCAGATGGGTCATTAAGCCTGTGTATTGCAAACACCTCATAAAACTTCCTGTGTTAAACAGGGAAGCCTGAAGTATATATGTATTTATGCAACATAAGTAATACCTTTTTACTCTTGTGTAACTGGTCGCA

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
CI01000004_11622516_11634475.mRNA True 2229 mRNA 0.43 12 11622516 11634925
Loading

Neighbor


gene id symbol gene type direction distance location
CI01000004_11608619_11618346 MALRD1 coding upstream 4089 11608619 ~ 11618427 (+)
CI01000004_11598169_11606266 MALRD1 coding upstream 16233 11598169 ~ 11606283 (+)
CI01000004_11592217_11595358 NA coding upstream 27158 11592217 ~ 11595358 (+)
CI01000004_11547197_11557429 CACNB2B coding upstream 64962 11547197 ~ 11560552 (+)
CI01000004_11520078_11522835 NA coding upstream 99423 11519927 ~ 11523093 (+)
CI01000004_11666900_11667179 NA coding downstream 31975 11666900 ~ 11667659 (+)
CI01000004_11668089_11670426 ACKR4A coding downstream 32778 11667703 ~ 11670922 (+)
CI01000004_11747225_11747971 RNF182 coding downstream 111611 11746536 ~ 11748095 (+)
CI01000004_11750356_11765031 RANBP9 coding downstream 114840 11749765 ~ 11766104 (+)
CI01000004_11771176_11773391 EPDR1 coding downstream 136164 11771089 ~ 11773516 (+)
G31690 NA non-coding upstream 56361 11515811 ~ 11566155 (+)
G31677 NA non-coding upstream 156145 11466036 ~ 11466371 (+)
G31665 NA non-coding upstream 215611 11406674 ~ 11406905 (+)
G31664 NA non-coding upstream 215905 11406286 ~ 11406611 (+)
G31721 NA non-coding downstream 57930 11692855 ~ 11694150 (+)
G31723 NA non-coding downstream 59462 11694387 ~ 11696280 (+)
G31727 NA non-coding downstream 71659 11706584 ~ 11706970 (+)
G31737 NA non-coding downstream 113600 11748525 ~ 11748761 (+)
G31625 NA non-coding downstream 156072 11790997 ~ 11803727 (+)
G30797 NA other upstream 1124728 10497376 ~ 10497788 (+)
CI01000004_08976512_08980033 TTPA other upstream 2641532 8976254 ~ 8980984 (+)
G28859 NA other upstream 3022913 8599235 ~ 8599603 (+)
CI01000004_08414451_08436256 NA other upstream 3171289 8414316 ~ 8439933 (+)
CI01000004_07654234_07655677 MRPL34 other upstream 3966133 7654234 ~ 7656383 (+)
G31710 NA other downstream 2326 11637251 ~ 11642400 (+)
G31865 NA other downstream 557205 12192130 ~ 12197418 (+)
CI01000004_12646972_12652534 NA other downstream 1007829 12646838 ~ 12652570 (+)
CI01000004_14036114_14036449 KIAA0040 other downstream 2388622 14035393 ~ 14039142 (+)

Expression


CI01000004_11622516_11634475 Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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CI01000004_11622516_11634475 Expression in each Bioproject

Bar chart with 22 bars.
CI01000004_11622516_11634475 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 25.
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Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015556 si:ch211-106h4.6 coding NC_007113.7 CM002886.2 31614533 ~ 31626209 (+)