CI01000004_11747225_11747971 (RNF182)



Basic Information


Item Value
gene id CI01000004_11747225_11747971
gene name RNF182
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 11746536 ~ 11748095 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>CI01000004_11747225_11747971.mRNA
ATATAAAGGGCTTGTGATCTATAATAAATCAGAATATAACAGACAAAATATTATGTTTGGAAAGAAATTTCAATCAAATCTAATTTCACATGGTAAAATCTCAGTAATACCTGGCATTGAGAGACAAGCTCAGTGAACAGCAATGACCTAATTTCTGATGTTGCACAGTGAACTGTGTACTGCTGACCTGGCTGGTATTCAAAATTACAGCTCGAAACAAGTTTCAAATAAGTTTCAAATGTTTTATATTATTGTTTATTCTAAATGTAAAGTAATTTCAAACTAATGTCCTCCTTTTTTGGAACAGCATTGCATTGAGCAAGCAAAATCAGCACCAGAAAGTGTGGAGCTACTAATTGGACTGAATTTCAGTGGCAACAAAAGCCCTGGCTAGAAAATTCCAGCCCTGGTTTTACAGGGCCTGCTTTGTTGCTGCAGTGTTTGTTCTCTACTGCTGTGTTAACAGTTATCTTTTCGGTATTGGCCTCTCCCCACCCTTCCACACTGTGCATGAAATGTTCCTCAGCACAAACCCGTCCAGAGCCTCTGTGGCACAGTGCAGGCGATGTTCCGTTCTGCATAGGACACCATCCAGACACCAGGACCGGCCCAGCAGCTGTCTCCCAACCATGTTCCCGCACAGCTTTGATTACAACCAGCCGATGAGAAAGCGCTGAGAGGAAGGAGACATGATGGGACAGCTCCCGGAGGATGTGGTGGGTGGCTTCACCGCAGAGGAACTGGAATGCAAGATCTGCTACTGTGCTTACAGCCTGTCAAGTCGACGGCCCAAGGTTCTTGAGTGCTGCCATTGTCTGTGTGCCAAGTGCCTTGCAAAAATCCTTGATTTAGGCGAATCCTCTCCAAATACAGTGGTATGTCCGTTCTGCCGCTACATCACGGACCTTCCCGGAGAAGTCGTAGATAGTCTACCAGATGAGTATAACTTGGTGTCAGCGCTGCTGTCCTTCCAGGCACGGAAACACCAGAACCTGAATGACACCCAAGGCGAGATTCTCCTCAGTCCCAGATGCCTCAACTCGCTGGTGGGACACTCTGCTTCAGCTTCCCCCACCTCGAATCGTTCCAATTATGTGGTGATCACCATTATGGAGCCTCGGCAGGAGTCTGTTATTTCAGCCCCGGGTAGGGATTACCGCTCTTCCAGTCTGGACTCCATGGCCTCCATTACCAATAGATGGACAGTGTGGAACTGTGCGGCCCTGTTGTGCCAGACCTCAGCGCGCATCCTGGTCTGGCTACTGGGGCTGCTGTACTTCAGCTCACTGCCTCTAGGTGTCTACCTGCTAATCATGCAGCATACCACAACGGGGGTGTTAATGGTCAGTCTGGTACCTGTCAGTCTTCTCATTGTCATGGTGTACGGCCTTTGCCAGTGCCTCTGTCGTGAGTTTTGGGACTGTGTGCCACCATAATGACCAAAGCAATAAGTGTAACTGTTATATTTGATGACTGGATGCGCTAATGGTCCTGCCGGTTTGTGGATTCTCCTGCTCATGGATAAACAATGTAGGCTACAGTGAACTGAAAATACAAACA

Function


symbol description
rnf182 Predicted to enable metal ion binding activity and transferase activity. Predicted to be involved in protein ubiquitination. Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane. Orthologous to human RNF182 (ring finger protein 182).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K11983 RNF182; E3 ubiquitin-protein ligase RNF182

RNA


RNA id representative length rna type GC content exon number start site end site
CI01000004_11747225_11747971.mRNA True 1560 mRNA 0.47 1 11746536 11748095
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Neighbor


gene id symbol gene type direction distance location
CI01000004_11668089_11670426 ACKR4A coding upstream 75614 11667703 ~ 11670922 (+)
CI01000004_11666900_11667179 NA coding upstream 78980 11666900 ~ 11667659 (+)
CI01000004_11622516_11634475 NA coding upstream 111611 11622516 ~ 11634925 (+)
CI01000004_11608619_11618346 MALRD1 coding upstream 128109 11608619 ~ 11618427 (+)
CI01000004_11598169_11606266 MALRD1 coding upstream 140253 11598169 ~ 11606283 (+)
CI01000004_11750356_11765031 RANBP9 coding downstream 1670 11749765 ~ 11766104 (+)
CI01000004_11771176_11773391 EPDR1 coding downstream 22994 11771089 ~ 11773516 (+)
CI01000004_11776595_11786233 STARD3NL coding downstream 28324 11776419 ~ 11786917 (+)
CI01000004_11863724_11890961 NA coding downstream 115629 11863724 ~ 11891114 (+)
CI01000004_11897082_11898506 MYCB coding downstream 148137 11896232 ~ 11899215 (+)
G31727 NA non-coding upstream 39566 11706584 ~ 11706970 (+)
G31723 NA non-coding upstream 50256 11694387 ~ 11696280 (+)
G31721 NA non-coding upstream 52386 11692855 ~ 11694150 (+)
G31690 NA non-coding upstream 180381 11515811 ~ 11566155 (+)
CI01000004_11547197_11557429 CACNB2B non-coding upstream 185984 11547197 ~ 11560552 (+)
G31737 NA non-coding downstream 430 11748525 ~ 11748761 (+)
G31625 NA non-coding downstream 42902 11790997 ~ 11803727 (+)
G31785 NA non-coding downstream 147758 11895853 ~ 11896129 (+)
G31758 NA non-coding downstream 152226 11900321 ~ 11931138 (+)
G31770 NA non-coding downstream 160988 11909083 ~ 11915940 (+)
G31710 NA other upstream 104136 11637251 ~ 11642400 (+)
G30797 NA other upstream 1248748 10497376 ~ 10497788 (+)
CI01000004_08976512_08980033 TTPA other upstream 2765552 8976254 ~ 8980984 (+)
G28859 NA other upstream 3146933 8599235 ~ 8599603 (+)
G31865 NA other downstream 444035 12192130 ~ 12197418 (+)
CI01000004_12646972_12652534 NA other downstream 894659 12646838 ~ 12652570 (+)
CI01000004_14036114_14036449 KIAA0040 other downstream 2275452 14035393 ~ 14039142 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other downstream 3343149 15091200 ~ 15097173 (+)
G34220 NA other downstream 4191262 15939357 ~ 15939950 (+)

Expression


CI01000004_11747225_11747971(RNF182) Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.25.
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CI01000004_11747225_11747971(RNF182) Expression in each Bioproject

Bar chart with 28 bars.
CI01000004_11747225_11747971(RNF182) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3.
End of interactive chart.

Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015560 rnf182 coding NC_007113.7 CM002886.2 31804582 ~ 31805604 (+)