Item | Value |
---|---|
gene id | CI01000004_11747225_11747971 |
gene name | RNF182 |
gene type | coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000004 |
NCBI id | null |
chromosome length | 17451736 |
location | 11746536 ~ 11748095 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
symbol | description |
---|---|
rnf182 | Predicted to enable metal ion binding activity and transferase activity. Predicted to be involved in protein ubiquitination. Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane. Orthologous to human RNF182 (ring finger protein 182). |
id | name | namespace |
---|---|---|
GO:0046872 | metal ion binding | molecular_function |
id | description |
---|---|
K11983 | RNF182; E3 ubiquitin-protein ligase RNF182 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
CI01000004_11747225_11747971.mRNA | True | 1560 | mRNA | 0.47 | 1 | 11746536 | 11748095 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000004_11668089_11670426 | ACKR4A | coding | upstream | 75614 | 11667703 ~ 11670922 (+) |
CI01000004_11666900_11667179 | NA | coding | upstream | 78980 | 11666900 ~ 11667659 (+) |
CI01000004_11622516_11634475 | NA | coding | upstream | 111611 | 11622516 ~ 11634925 (+) |
CI01000004_11608619_11618346 | MALRD1 | coding | upstream | 128109 | 11608619 ~ 11618427 (+) |
CI01000004_11598169_11606266 | MALRD1 | coding | upstream | 140253 | 11598169 ~ 11606283 (+) |
CI01000004_11750356_11765031 | RANBP9 | coding | downstream | 1670 | 11749765 ~ 11766104 (+) |
CI01000004_11771176_11773391 | EPDR1 | coding | downstream | 22994 | 11771089 ~ 11773516 (+) |
CI01000004_11776595_11786233 | STARD3NL | coding | downstream | 28324 | 11776419 ~ 11786917 (+) |
CI01000004_11863724_11890961 | NA | coding | downstream | 115629 | 11863724 ~ 11891114 (+) |
CI01000004_11897082_11898506 | MYCB | coding | downstream | 148137 | 11896232 ~ 11899215 (+) |
G31727 | NA | non-coding | upstream | 39566 | 11706584 ~ 11706970 (+) |
G31723 | NA | non-coding | upstream | 50256 | 11694387 ~ 11696280 (+) |
G31721 | NA | non-coding | upstream | 52386 | 11692855 ~ 11694150 (+) |
G31690 | NA | non-coding | upstream | 180381 | 11515811 ~ 11566155 (+) |
CI01000004_11547197_11557429 | CACNB2B | non-coding | upstream | 185984 | 11547197 ~ 11560552 (+) |
G31737 | NA | non-coding | downstream | 430 | 11748525 ~ 11748761 (+) |
G31625 | NA | non-coding | downstream | 42902 | 11790997 ~ 11803727 (+) |
G31785 | NA | non-coding | downstream | 147758 | 11895853 ~ 11896129 (+) |
G31758 | NA | non-coding | downstream | 152226 | 11900321 ~ 11931138 (+) |
G31770 | NA | non-coding | downstream | 160988 | 11909083 ~ 11915940 (+) |
G31710 | NA | other | upstream | 104136 | 11637251 ~ 11642400 (+) |
G30797 | NA | other | upstream | 1248748 | 10497376 ~ 10497788 (+) |
CI01000004_08976512_08980033 | TTPA | other | upstream | 2765552 | 8976254 ~ 8980984 (+) |
G28859 | NA | other | upstream | 3146933 | 8599235 ~ 8599603 (+) |
G31865 | NA | other | downstream | 444035 | 12192130 ~ 12197418 (+) |
CI01000004_12646972_12652534 | NA | other | downstream | 894659 | 12646838 ~ 12652570 (+) |
CI01000004_14036114_14036449 | KIAA0040 | other | downstream | 2275452 | 14035393 ~ 14039142 (+) |
CI01000004_15091390_15096502 | GA45B, GADD45B, GADD45BB | other | downstream | 3343149 | 15091200 ~ 15097173 (+) |
G34220 | NA | other | downstream | 4191262 | 15939357 ~ 15939950 (+) |
species | gene id | symbol | gene type | chromosome | NCBI id | location |
---|---|---|---|---|---|---|
zebrafish (Danio rerio) | XLOC_015560 | rnf182 | coding | NC_007113.7 | CM002886.2 | 31804582 ~ 31805604 (+) |