CI01000004_11771176_11773391 (EPDR1)


Basic Information

Item Value
gene id CI01000004_11771176_11773391
gene name EPDR1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 11771089 ~ 11773516 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_11771176_11773391.mRNA
CTAAAAAAACAATACTCCGCTTAAAGGCATTCGAATCGTTCTGTCAATATTTAATTTTCATGTAAATATCGCTTTGCACCAACAGACATGCCAGGCTTTGTTGTTTTTGCGCTAGTATTGTCATTGTCCGCGATAGTGCCCTGTCTGGGCTCTCCACCGTCAGTAGCGGCATCGCCTCAGCCCTGTCTCGCGCCGTTGCAGTGGGAGGGTCGGACCGTTCAATATGACCACGGCACGGGACGAAACACACGGGCATCGGTCACCTATGATGCACAGAATCAGCGAATTAGGGTTCTGGAGCAGAAGACAGGACACACACCTTGTAAAAAGTTCTTTGAGTACATCTACTTGTTCAAGAGTGGAGTGCTTTTCCAGATTGAGGAAATTACCAAGCAGTGTGCAAAGATCGCTCTGACGGAGGCCTGGGACCCTTATGACATACCCCTGAACTCCACATATGAGGACCAGTACTTCATTGGAGGACCTGGAGACATGATCGAAGTTCAAGAATGGTCTGATCGAAAACCGGCTCGCAAAAATGAAGCTTGGGTTGGTGTGTACACTTTGAAGGACTGCTATCCTGTGCAGGAGACATACACAAAGAACAGTAGCGTGACCACGTCCACCCGCTTCTTTGACCTTCAGCTGGGCATTAGTGACCCTGGGGTGTTCAACCCACCCAGCACCTGCCAGTCAGCACTGTCCGAGAAGATGACATCTGACTGCTGAATACCTCACTCATCTCTGCTCATCACATACCCATAATACAGTAACAGCTTCTAAATAACTGATATTGCAATGACAAAGAGCACATGACATTAGTGCAGGTACTATTAAATATAATCAGCTTTGAA

Function

symbol description
epdr1 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within cell-matrix adhesion. Predicted to be located in extracellular region. Predicted to be active in lysosome. Is expressed in hindbrain; midbrain hindbrain boundary; optic stalk; spinal cord; and telencephalon. Orthologous to human EPDR1 (ependymin related 1).

GO:

id name namespace
GO:0007160 cell-matrix adhesion biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_11771176_11773391.mRNA True 854 mRNA 0.47 3 11771089 11773516

Neighbor

gene id symbol gene type direction distance location
CI01000004_11750356_11765031 RANBP9 coding upstream 4985 11749765 ~ 11766104 (+)
CI01000004_11747225_11747971 RNF182 coding upstream 22994 11746536 ~ 11748095 (+)
CI01000004_11668089_11670426 ACKR4A coding upstream 100167 11667703 ~ 11670922 (+)
CI01000004_11666900_11667179 NA coding upstream 103533 11666900 ~ 11667659 (+)
CI01000004_11622516_11634475 NA coding upstream 136164 11622516 ~ 11634925 (+)
CI01000004_11776595_11786233 STARD3NL coding downstream 2903 11776419 ~ 11786917 (+)
CI01000004_11863724_11890961 NA coding downstream 90208 11863724 ~ 11891114 (+)
CI01000004_11897082_11898506 MYCB coding downstream 122716 11896232 ~ 11899215 (+)
CI01000004_12033980_12034384 NA coding downstream 260140 12033656 ~ 12034402 (+)
CI01000004_12222833_12223126 NA coding downstream 448410 12221926 ~ 12223244 (+)
G31737 NA non-coding upstream 22328 11748525 ~ 11748761 (+)
G31727 NA non-coding upstream 64119 11706584 ~ 11706970 (+)
G31723 NA non-coding upstream 74809 11694387 ~ 11696280 (+)
G31721 NA non-coding upstream 76939 11692855 ~ 11694150 (+)
CI01000004_11547197_11557429 CACNB2B non-coding upstream 210537 11547197 ~ 11560552 (+)
G31625 NA non-coding downstream 17481 11790997 ~ 11803727 (+)
G31785 NA non-coding downstream 122337 11895853 ~ 11896129 (+)
G31758 NA non-coding downstream 126805 11900321 ~ 11931138 (+)
G31770 NA non-coding downstream 135567 11909083 ~ 11915940 (+)
G31764 NA non-coding downstream 157843 11931359 ~ 11932195 (+)
G31710 NA other upstream 128689 11637251 ~ 11642400 (+)
G30797 NA other upstream 1273301 10497376 ~ 10497788 (+)
CI01000004_08976512_08980033 TTPA other upstream 2790105 8976254 ~ 8980984 (+)
G28859 NA other upstream 3171486 8599235 ~ 8599603 (+)
G31865 NA other downstream 418614 12192130 ~ 12197418 (+)
CI01000004_12646972_12652534 NA other downstream 869238 12646838 ~ 12652570 (+)
CI01000004_14036114_14036449 KIAA0040 other downstream 2250031 14035393 ~ 14039142 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other downstream 3317728 15091200 ~ 15097173 (+)
G34220 NA other downstream 4165841 15939357 ~ 15939950 (+)

Expression


Co-expression Network