CI01000004_11897082_11898506 (MYCB)


Basic Information

Item Value
gene id CI01000004_11897082_11898506
gene name MYCB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 11896232 ~ 11899215 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_11897082_11898506.mRNA
CTATAAAATCACCCCTTCTAACACCCATCACAGACAGCTGTGAGAGGAACTTGTAAAATGTGTAAATAACAGGCGTTGGGTGCTGGCGATGTACTACAGTCTGTAGAGGCACAACTCAGTGTGCAGTCAGTGTTTTCATTAACGCTCCGCCCCGGAAATAAGTCCGCGCTGTTAAATAGTTCCATGTGTAACTCGTTTTCAATAAATAAGGTCGCATCCTGAGAATCGTTTTTCATTGCCGTATACATTGTCAAACAGTTACGTGTTAATAGAATAGCTAACAAGAAGCGTTTGTGATTTGTTCATCTTTCTGCGTCAAGCAAAATTGGCGCGAACTGGGCGCAAGAATATATCAAGAGTAAGGGAGGGGAAAAACAATCCCGTAGTATTAAAGCCCACGGGAGCAGCTGTTCGAAATCTTGCGGTAAATGACAAGCAGCCGCTCGGGTTCTGTAGTCGCAGAAGCGCGCAGGTTGAGCGGCTCGACTCACTCCCACTCTGGATTTACTTTTACTTGATACTTCAGACTCACTGACATCTGACCATATTGCCAGCTTCATTCAGTTTCACCACAGCTACGGTACGTCCTTCTGAATTACGATTTATTATCGTTTTTTTTAATCTGTATTTATATATTTGGCGAACTCCTTTTTGGACCATAAGACTAAATTCTTAATTTAAGTTTGTATGACTTTTCTTCTGCATAATCATTATCAATACGTAACATGTTAAGCAACTTGATGAGATGAGACAACAGTACTTCTGAAGGGTTTTCTTAAGATGATTCACTTATGCCCATTTAAAGGGCTAGATCGTAATCATGCTTTCTTCTTCTTCACAGGCACTCACCATGCCGCTGAATTCAAGTATGGCGAGTAAAAATTATGATTACGACTACGATTCCTACCAACCCTATTTTTATTTCGACAACGAGGATGAGGATTTCTATAACCACCAACACGGACAACCACCGGCGCCCAGTGAGGATATATGGAAGAAATTTGAACTGCTCCCCACTCCGCCTCTCTCTCCGAGCCGGCGTCCCTCTCTGCCAGACTCCTTTCCCTCCATTGCCGACCAGCTGGAGATGGTTTCGGAGTTTCTAGGGGACGACGTGGTCAACCACAGTTTTATTTGCGATGCGGACTACTCCCAGTCTTTTCTGAAGTCAATTATCATTCAGGACTGTATGTGGAGCGGGTTCTCCGCCGCAGCTAAGCTGGAGAAGGTGGTGTCGGAGAGACTAGCGTCGCTCCAGGCGGCGAGGAAAGAGTCATCCAGGAGTGACTCTACGGACGGCTGTCGGTCCAGCCCTAACGTCAGCTACCTTCAGGACATGAGTACCCCTACCTCGCAGTGCATTGACCCGTCTGTAGTGTTTCCGTTTCCATTGACTGACAGCTCAAAGCCGTGTACACCGTCGCCCACACCGACTTCCACAACACTGCCACTGGATACTCCACCTAACAGCGGGAGTAGCAGCAGTAGCAGTAGTGACAGTGATTCCGATGACGAAGAGGAGGAGGAAATCGACGTTGTCACGGTGGAGAAGAGAAAGTCTGTGAGGAAGTCTGACGCCAACGCAACGCATCAAAGCCCCGTCGTCCTCAAGCGGTGTCACGTTAATATTCACCAACACAACTACGCAGCCCCCCCATCCACGAAGAACGAGCAGCCTGCAGTCAAGAGGATTAAATTCGAGAGTCACATTCGGGCGTTTAAACAAATTAGCCACAACCGAAAATGCGCGAGTCCCAGGACATCGGACTCTGAGGATAACGATAAACGGAGGACTCATAACGTGCTCGAGCGGCAACGGCGGAATGAGCTCAAACTGAGTTTCTTCGCGCTGAGGGACGTAATTCCTGACGTGGCGAACAACGAGAAAGCTGCCAAAGTGGTGATACTCAAGAAGGCCACTGAGTGTATAGTGAGCATGCAAGAAGATGAACAAAAACTGATATCACTTAAAGAGCAATTAAGGAGAAAATGTGAACATTTGAAACAGAGACTTGAGCAGTTAAGCAGTTCTTAAGTTGCTTGGACTTAATTCATGGACTGATAGTTTTAAGCATCTTTGTGTGGTTCTGCCCAATACAAGGTATCAAGGGTGTGGCAAGTAGTGAACAATCTGACATTGATTTATACAATTACACTGCCTCAGTTTGAACATAATGGAGGTTATTATTTGTATTTAATTTTATTTTTTAGTAATAAAATGGTCTGCAGTTCCATTTGACTGTTGGCCTTAACTTAATGTTTTTTGTTTTTCTATGTTTTGTACATATTGTTGATTTTTCTGAATCATAAAATGCATTTCTCTATAAAACAGTTTTTTGGCTAATCATGTCTTCAACGTGGACTCATTGCTTTTGTCTTTATCGGTTTCATGATGACCCATTTCAAAGCCATCATTAAGTAATCCATTAAGGCGATATAGTCATGCACCAATCCAACGTTTCATTGATTTGGCGCACTTTCAGTGTACACAAGACTCTGTTTAGCACATAATTTGCCTTGGCAATGCCATCATCTGTTTGTCAGTTTAGGATGACTAATGCTTGTCACAATTACATTCTCCATTTAAAAGCATCAAAGCCAGTGCCTTGTGTAAAGCCACAGGCTGAATCACATGTCTACATATTGATTCGGTCATCATCTACTGTTCATGCTCTTGGCTACACTGGCTCAAATACACAAAGTTTATAGTGGTCTGGCTTTTAGCCAATCACATCTATCAGAAA

Function

symbol description
mycb Enables DNA-binding transcription factor activity, RNA polymerase II-specific. Involved in negative regulation of transcription by RNA polymerase II and positive regulation of transcription by RNA polymerase II. Acts upstream of or within definitive hemopoiesis and hematopoietic progenitor cell differentiation. Predicted to be located in nucleus. Is expressed in several structures, including caudal vein plexus; intestine; nervous system; presumptive neural retina; and shield. Human ortholog(s) of this gene implicated in several diseases, including carcinoma (multiple); demyelinating disease; hematologic cancer (multiple); prostate cancer (multiple); and urinary bladder cancer. Orthologous to human MYC (MYC proto-oncogene, bHLH transcription factor).

GO:

id name namespace
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K04377 MYC; Myc proto-oncogene protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_11897082_11898506.mRNA True 2744 mRNA 0.44 2 11896232 11899215

Neighbor

gene id symbol gene type direction distance location
CI01000004_11863724_11890961 NA coding upstream 5118 11863724 ~ 11891114 (+)
CI01000004_11776595_11786233 STARD3NL coding upstream 109315 11776419 ~ 11786917 (+)
CI01000004_11771176_11773391 EPDR1 coding upstream 122716 11771089 ~ 11773516 (+)
CI01000004_11750356_11765031 RANBP9 coding upstream 130128 11749765 ~ 11766104 (+)
CI01000004_11747225_11747971 RNF182 coding upstream 148137 11746536 ~ 11748095 (+)
CI01000004_12033980_12034384 NA coding downstream 134441 12033656 ~ 12034402 (+)
CI01000004_12222833_12223126 NA coding downstream 322711 12221926 ~ 12223244 (+)
CI01000004_12331486_12332789 NA coding downstream 431625 12330840 ~ 12332997 (+)
CI01000004_12353073_12362622 KLHL18 coding downstream 453745 12352960 ~ 12362716 (+)
CI01000004_12362858_12363136 NA coding downstream 463592 12362807 ~ 12363136 (+)
G31785 NA non-coding upstream 103 11895853 ~ 11896129 (+)
G31625 NA non-coding upstream 92505 11790997 ~ 11803727 (+)
G31737 NA non-coding upstream 147471 11748525 ~ 11748761 (+)
G31727 NA non-coding upstream 189262 11706584 ~ 11706970 (+)
G31723 NA non-coding upstream 199952 11694387 ~ 11696280 (+)
G31758 NA non-coding downstream 1106 11900321 ~ 11931138 (+)
G31770 NA non-coding downstream 9868 11909083 ~ 11915940 (+)
G31764 NA non-coding downstream 32144 11931359 ~ 11932195 (+)
G31762 NA non-coding downstream 33172 11932387 ~ 11934446 (+)
G31778 NA non-coding downstream 51778 11950993 ~ 11951357 (+)
CI01000004_11666900_11667179 NA other upstream 228573 11666900 ~ 11667659 (+)
G31710 NA other upstream 253832 11637251 ~ 11642400 (+)
G30797 NA other upstream 1398444 10497376 ~ 10497788 (+)
CI01000004_08976512_08980033 TTPA other upstream 2915248 8976254 ~ 8980984 (+)
G28859 NA other upstream 3296629 8599235 ~ 8599603 (+)
G31865 NA other downstream 292915 12192130 ~ 12197418 (+)
CI01000004_12646972_12652534 NA other downstream 743539 12646838 ~ 12652570 (+)
CI01000004_14036114_14036449 KIAA0040 other downstream 2124332 14035393 ~ 14039142 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other downstream 3192029 15091200 ~ 15097173 (+)
G34220 NA other downstream 4040142 15939357 ~ 15939950 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location