CI01000004_12239182_12271760 (FASTK)


Basic Information

Item Value
gene id CI01000004_12239182_12271760
gene name FASTK
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 12238215 ~ 12272219 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_12239182_12271760.mRNA
ATTTGATAGTCATTTTTATGTTAATTTATCATGGCAAATGAGTTATTTATGTACAGGACACCAAAAGGCACCCTACAGTGATATTGACCCATATGTGGTAGGCTACAACATAACATCGACAATTTTTTTAGACCTATTAGTCGAAACATATCATCTAAAACAGGGATTCCCAAAGTGTGGTACGCGAGCTGCCACCAGGGGGTGCGCGAGAGGAAAAATGTAATGGCGGTCTTGTTTTTTTAAGTGGGATTTTTCCATACAATAAAAAAACATGAACAGTAAACATTTCCTTTGTAATCGCTTTTATTTTAAATAAAAAACTATAATTTATTAGTTTTTGATAGAAACGTAGAAGAAGACAGCTACTGTCTTCTTCTACACTGCTCTTCTTTTATGCACTACAGGCTAGGCTATATGTGTGCCAACTCGTTTCATTCATTCCATATATATATTATAAATATGCTTAACTGGCTGAAATCAGGGAAACTGTCAAGTGGGACGTCTTATGATAAAGTTGTTAGTCACGAAGGAGGAGAGGGACCAAGAGAGAGTGAGGATTTGGAGGCAACAGAGACGGAGAGAATAGAAAAAGAAAATGAGCGGGAGTCAGAAGATGCTCCGGAGGAAACCGAAGAGGGAAGGAGATGGCAAAAAAGAGGGGATGAGGATCAGGCAAACTGTGAAGAACTTCAGTTATTGTGCAAGATGAGAGGTTCACTGTTACTGCTTAGCGCTCTGTTACTGCTGGAGTCCACAGACGGAAAGAAAGAATATCAACTAGGCCAACCTGAGACAAACATCATTATTGACAAGGCAATAAAATTGGCCAATGAGAGACATGGAAAAGCCAAACACCTTGATTTTGCCTCCATTTTAAATTCTGATTATGACAAGCGCATGCTTAATGTGTTATTAAAACCCACCACATGTGACAAAACAAAACCGTTTGTCCATCAGAAAGACTGTAAAATCCAAAATAAGGCTACAGATTATGACAAGCGCATGGTTAATGTGTTATTAAAACCCACTTCATGTGACCGCAAGACGACACCGATGGTCCATCAGAAAGACTGTGAAATCCAAAATGATGCTAGATGTTTTAAACTGATGTATATCAATACAAATTACATTAAGGGACCTGAAGAGGAACTTGATAATGCACAGATCTTTTCTGAACATTGCAGCTTTGAGATGTTAAATTGGGGAAATGTTTGTCCCAAAGAGTATTTGCAGTATAGTTTTGTCAGTTGTGTTGACATGCATTTAGTTTGTAATGGTTCACCACCTTATAAGTTGGGTTTTAGTCATGCAGGTCTTATTATATTAGGACAAGATATTTGGACTGATGAATCGGAATATTCATACCAAAATCGGGCAAACAGTGAAGAACTTCAGTTATTGTGCAAGATGAGAGGTTCACTGTTACTGCTTAGCGCTCTGTTACTGCTGGAGTCCACAGACGGAAAGAAAGAATATCATCAACTAGGCCAACATGATTCAAACATTATTGACAAGGCAATAAAAGAAGCCAATGATAGACATGGAAAAGCCAAACACCTTGATTTTGACTCCATTTTAAATTCTGATTATGACAAGCGCATGGTTAATGTGTTATTAAAACCCACAACATGTGACAAGACAATACCGTTTGTCCATCGGAAAGACTGTAAAATCCAAAATAAGGCTACACCTCAAGTTTCTTGTGTTGAATGTCGTGGAGAGATGTCCTGTTTCCTTCTCAGAGAACAAAAAAAGGAGTGTTCTCTTGAACTTCCCTCTTGGACCACGCTATATACCATGCTGGGGCTGCCTTTTCACTTTGGCCTCTTAACCTGCAGGAGATTCTCCTCGCCCCACCAGCCTTCTCGCCTACTGAGTCTAGGTGCTCTTATTAGTATGTACACCACACGCATGTACAGCGGTGGTGGGGGCAAGCCAGGTCGGCGCATCGGCCTGATTGGAGGAGGGCCGCCTATGCTGGAGAACCACCATCATCCACTCCCTCCACATCACCCTCATGTCCATCAGCCTCAGAGCTACCCGCCCGTTTATCAAGCCCGTCTAGATGCCCACCGGCCCCATTACCAGACCCACCAGCACTACCACACACACCCTCAAGTCGCCCACCTTCCTCCTCCGCACTACCAGCCCCATGCGCATTTGCACCATGGCAAGAAGAAGACCTGGAACTTCATCCATGAGAAGATGAGCTACGACACCTTCTTCACCATGAAGCGGCTGATCGATCGCTCGCGCACCGTGGATGAAGTTCTCCGCTGGGTCACGCAGAATCCAGGGAAGATTTCGCACAATCATTACCCCATTGCCCTACAGAAGATCGGTCAGCTCCTGGTACTGCAGCAGGCTGGAGGTCAGGCAGGTGGGAGCGGAGCGGGTGGCGGTGGCGGGGGAGCGGGCGAAGGAACCTTGCCCGCGACCTCTGTCGGAGGTTCGGGGGAGAACACTATACGACAGATTCTGGATAATCAGGATTTTCAGACTCTCTGTGATGCCATTGTCAATGACTGCTCCAAGTTCGACAACTTTAGCATTGTTAACTGCCTTTATGCTGTAGCTGCTCTTGGGCTGCCCAGTGACTCTCAGATTGTACAGGTGCTGGAGGAAGAGTCCCAGGCTCGTCTGTCCCAGTTCAACCAAAAGGACATCTCCATGGTTTTCAGCAGCAGCATGAAGCTGCATCCGTCCAGCCAGCATCCCTTGATTGAGTCGTGTCTCGCCGGGCTAGAGAAGAACATCGAGCGGGAGCGCCACCCCCAGACGCTCTTCCTCCTGCTCTCCTACTACCGCACTAAATGGAGAGCGCTGCGGGTGGCGGATGGAGCCTCCCCGGAGCAGCTGGTGGTGAACCGGAAGATCCTGCGGCTGGTGAAGCACACGCTGGCCAGCGTTAGCAGCGTCAGAGACCATGAGATGGCTCTGCTGGATGAGATGCTGTCAGCATGTGCCAGGGAGGCCAGCAACAAGAGCCTCGAGCTTATCTTCAGCTCTCACCTCTTCTACCAGAACAGGCAGGAGAAGTTTGTGAGCAGTCTTTCAGAGGAGTTGCCTAAAAAGGTTGATAGCATCACGCCTTACACCATGGCCCTCATTGCCAAGTACATCGCTCGCCATCGTCTCAGAGAAACACGCTTGCTAGACACTATCGCTGACTTCTTGGTCAAGAAGGGTGAATACCTGGACAGCAAGGTTAAGCAAATTGATTGGTTTCAGTACTATAGGGTTGTTTATGTATTTACTGTGATCCAGAAGCTTGTCTTCCCATTCAGTCGTATGAGTTATCGGCCTGCTAATGAGCAGTTTTTTTCCAAGCTGGAGATGGTGCTTGAACTCAAGGCTCTGAGCTCTCCGCTGGCAACTGTAAACATCCTCATGTCCTTGTTTCAGCTGGGTCATTTTCCTGGGCTTGTTCTTCACCGTGTCTTCTCTCCATCGTTCATCAGCAATGTCACAAACAGCCCGTACGCCCTAATCGTACGTCGGTACCTTTCACTACTGGATGCAGCCGTAGAGCTGGAATACAGGGACTACACTGGACCTCGCCTTCAGGACACCCACAAAGTGCTCATGTTTGACCACGCTTTAACTGCAGATGAAGTGAACCGCAAATACAGTTATAAAGGTCTGGTTGCAGAGGCACTCCGGCAGCTTGTTGGCGAGCACGGCTACAAACAAGATGAAGTTCTCGCACCAGGATACTACACAGATTTCCTGCTGTGGATCGACAGCACAGGCCGCGTCCTCCCCATCAGAACAGGTACACCAGCAGCAACATTAGCAGCAGGATCAACCTCGTGTGTAGTACTGAACCTTAAATCTCCAGACGGGTCCAGCTCAGTCACGGCCCTCACTACTGACTTCCAGAAGTTCTCTCCCTTTGCCCCGTCACTGGAGGAAGGGGCTGACAAACGAGCCGGAGAGGAACCTTCCTTCCTCTCTGCTCACATGCGTCCTCCAGCAGCGGCAGGATCTCAAAGAGTCGGCCCTAATGGAACGGTCTCGCTGGACTACAACCCATATTACACCACTTCAGATTATTACTCAACTCTAGCCAAGGAACACTCTCTGGAGAGCCAGGACAGCTCAACCCTCAGTAGCCCCTCAGACTGCCTGACCCAGACAGGACCCTCCGTTCCAGGGACTGTTGCACCGCAAGACTCCCTGTTCCAGTTCTCCATTGGAAAAATCCTGGAGGATGAGGGGGGTGCTGCGACAGGAGCGAACACAGGGCCGGACTGTGAGATCACTACGTTTTATGAAAGTGTGTCGTACCCAGAAGGTGGCGAGAGTGATGTAGTGGTCGGTTCTCCACTGCAGCTTCACAACCCTGACACCCCTGAAGCTGACCGGACCACAGGAGAGCAGGTGAAGAGGGTTATTATGTCTGTGAATGATAAATGGCATTATTGCCATAATTCTGATGTGCTGGTCGGATCCCGGGCCATGAGAGATCGTCACCTGCAGTTACTGGGCTACATCATACTACAGTTGCCCTATCTGGAGTTGGAGAAGCTGAATGGGATTGAGGAAGTGAAGCAGTACCTACACAAAAAGCTGCTGGAGGTTCCTTTATGACCACATAAACGGAGCGAGTGTGTGTTCATGTGCTTCAGAGAGCATGTGCGACTTCCACATTTTCAAGAGGTTTTGTTGTTTTCAGAAAGACTATGGTGTACGTATGTGTCTGTGTGTGTATGTGAGCGTCTGTATGTGCGTTTGTACACACAGGATGTGAACAGTCCTTGTTTTCAGGACAAAACATCAGTTGACACAAGGAATCTGGGTAGGTGTTATCGTCATTCTTTAATTATACAGAGGTCTCCTCTGGGCAAAATTCAAAAAGGTAAATGTAGTAAGTCTAACTGTGCCTGGAAAACAGCTTATTCAATGTCATCAAGCATACAGTACTTCCCTCAGTGAGTGATCAAGGACCATTTCATTCTCAATGAACGGTATATTCAGCAACACTTCTGAAATGTTTTGTATTTTGTCCAGAGTGAGTGTTTTTGGTATATCTTTGGGGGTGAGAGGAGCGGGTGGTTTATTATTTCATATTCCCCAGCGTTTTAATTTTGTTTTTGATGGTGTTCCCACATCCACTTGCGTGTCCTCACGGTTATTTTGGTGTGTTTAGGTGCGGGCTTGGAAGTAGGCAATAAGATTGTCTTTTGGGGCAAGTATAAGGACTATAGTATATTTTATGGATGTGGACACAAGTGTGCAGAGGTCTGGTGATGAGCCACAGCTCTTTGTATTTCAGATGCTGCCACCACGGCCACTGCCGCTCTTTGGTTTTAAACCTAAAAGAATTGAGGGTTTGGGGATAAATATGGACATATATATTATATGAAATAAGTGGAAATGTAAGTCTTATGATGTGAACTGTATGGAGATACAGAAAAGAAAAGCTGGAATGTACAAGAATTATTATATGCAGGAATGGGCTATGTTTATATATTTTATTTTCTCAAAATGATTGATGCTTTGGTGTCATGCGAGGGGGAAAGCAATGCACAAAGTTGACTGCAGGATAGTTATTAAA

Function

symbol description
fastk Predicted to enable RNA binding activity. Predicted to be involved in mitochondrial RNA processing and regulation of mitochondrial mRNA stability. Predicted to be active in mitochondrial matrix and ribonucleoprotein granule. Orthologous to human FASTK (Fas activated serine/threonine kinase).

GO:

id name namespace
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K08290 FASTK; Fas-activated serine/threonine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_12239182_12271760.mRNA True 5560 mRNA 0.46 18 12238215 12272219

Neighbor

gene id symbol gene type direction distance location
CI01000004_12228586_12231682 NA coding downstream 6153 12228517 ~ 12232062 (-)
CI01000004_12198187_12210149 SMARCD3A, SMARCD3B, SMARCD3 coding downstream 28066 12197912 ~ 12210149 (-)
CI01000004_12191329_12197377 ABCF2B, ABCF2 coding downstream 40838 12190634 ~ 12197377 (-)
CI01000004_12181888_12188055 NA coding downstream 50160 12181579 ~ 12188055 (-)
CI01000004_12170772_12177138 TTC19 coding downstream 61077 12170517 ~ 12177138 (-)
CI01000004_12279303_12308271 PUF60, PUF60A coding upstream 6675 12278894 ~ 12308271 (-)
CI01000004_12315924_12323953 NRBP2, NRBP2A coding upstream 42526 12314745 ~ 12323953 (-)
CI01000004_12345221_12345884 NA coding upstream 72591 12344810 ~ 12346309 (-)
CI01000004_12364142_12368537 BFSP2 coding upstream 91816 12364035 ~ 12368672 (-)
CI01000004_12404227_12411145 PRPF4BA coding upstream 131313 12403532 ~ 12411665 (-)
G32258 NA non-coding downstream 41087 12196373 ~ 12197128 (-)
G32177 NA non-coding downstream 58391 12177943 ~ 12179824 (-)
G32256 NA non-coding downstream 71471 12166528 ~ 12166744 (-)
G32240 NA non-coding downstream 246396 11991608 ~ 11991819 (-)
G32239 NA non-coding downstream 250388 11987529 ~ 11987827 (-)
G32200 NA non-coding upstream 10431 12282650 ~ 12286780 (-)
G32261 NA non-coding upstream 79800 12352019 ~ 12352451 (-)
G32264 NA non-coding upstream 147213 12419432 ~ 12419839 (-)
G32266 NA non-coding upstream 151370 12423589 ~ 12423850 (-)
G32267 NA non-coding upstream 151942 12424161 ~ 12424469 (-)
G32150 NA other downstream 457264 11776519 ~ 11780951 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other downstream 825308 11406957 ~ 11412907 (-)
G31203 NA other downstream 1487574 10746437 ~ 10750641 (-)
G30316 NA other downstream 2831294 9377937 ~ 9406921 (-)
G29746 NA other downstream 3880088 8354498 ~ 8358127 (-)
G32207 NA other upstream 103949 12376168 ~ 12384780 (-)
CI01000004_14543631_14551256 NA other upstream 2278581 14541515 ~ 14551352 (-)
G33746 NA other upstream 2296574 14568793 ~ 14569264 (-)
G33750 NA other upstream 2306239 14578458 ~ 14579001 (-)
G33755 NA other upstream 2309187 14581406 ~ 14581873 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00019072 NA coding CM030124.1 CM030124.1 2177927 ~ 2188659 (+)