CI01000004_12279303_12308271 (PUF60, PUF60A)


Basic Information

Item Value
gene id CI01000004_12279303_12308271
gene name PUF60, PUF60A
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 12278894 ~ 12308271 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_12279303_12308271.mRNA
GGAGGCGAGGCTCTGATGATGGAGAATGGACAGAGCACGGCCTCGAAGCTCGGCCTGCCGCCCCTCACCCCCGAACAGCAGGAGGCGCTGCAGAAGCTTTATAAGCATGTGTTTGCTCTGTGCACATGTAAGCAAGCAGTGGACAACAGCAGAGCCAGTGCTATGCCTTCGGTACTAGTGGCGTCTGATTATCTGCTAGCAAAGAAGTATGCCATGGAACAAAGCATCAAGAGTGTCCTGGTCAAACAGACCCTCGCCCATCAGCAGCAACAGCTCAGCAACCTACAGCTCCCTAATTCCCTTCAGATGGCCTCATTAACGATGGGCTTTGGAGATCCCCTCTCACCACTACAGTCTGTTGCAGCACAGAGGCAACGGGCATTAGCCATAATGTGCCGTGTTTATGTTGGGTCCATCTACTACGAGCTAGGAGAAGACACCATCAGACAGGCCTTTGCTCCTTTCGGTCCCATTAAGAGCATTGACATGTCCTGGGACTCTGTTACATTAAAACACAAGGGTTTTGCATTTGTAGAGTATGAAGTACCAGAGGCAGCACAGCTCGCTTTAGAACAGATGAACTCCGTTATGCTGGGTGGTAGAAACATTAAAGTGGGACGGCCGAGCAACATTGGTCAGGCTCAACCGATCATAGACCAGCTAGCCGAAGAAGCGCGCGCCTTCAACCGGATTTACGTGGCGTCCGTGCATCCCGATTTGTCAGACGACGACATCAAGAGCGTGTTCGAGGCCTTCGGAAGAATCAAGTCTTGCACCCTGGCGCGGGACCCCACGACGGGAAAGCACAAAGGCTATGGCTTCATAGAATATGATAAGGCCCAGTCTGCGCAGGATGCCGTTTCCTCCATGAACCTTTTCGACTTGGGCGGGCAGTACCTGCGAGTGGGCAAAGCCGTCACGCCACCCATGCCCCTTCTGACTCCAGCAACGCCGGGCGGACTGCCTCCCGCTGCTGCCGTAGCCGCTGCAGCCGCCACTGCCAAAATCACAGCACAGAGCTTTTACATGCAGAAAGATAACATAGCGTGTAAACTCCAAAAACAGATGGCATGGAATCTGTCCCAGCCGGAGAATCGGACAGAAGACTTCCTCAACTGTCTGGTCTGTTTGTCCGTGACGTGTTTGTCCACTCGTGTCGGTGTTATGTGTGCTTTTAACGGGCGCTGTCCAGGCGGTGTTTCTATATGTCCCACTCTGTTCTTCCAGGAAGCGGTAGCGGGAGCATCTATTCTGGGGGCGATGACTGGCGGGTCGGGCCTGAACCTGCCCCAGCTTCCACAGGCAGTCATGGCTGCTCAGGCCCCAGGGGTCATTACAGGGGTGACGCCAGCCCGGCCCACGCTGCCTGTTGTGCCTCAGGTGGGCCTTGTGAACCCGGTGTTGGCCTCTCCGCCATCACTGTCGGCAGCTGTGGCTGCAGCCCAAGAGGCAAAGAAGGAAAAAGAAGAGGAGGAAGCCGCTCAAGACGGCACGGGCCAGGAGATGCTCAGTGAACAGGAGCACATGAGCATCTCGGGCAGCAGCGCCCGGCATATGGTCATGCAGAAACTGCTGAGAAAACAGGAGGATTATGACAAGCGCATGCTTAATGTGTTATTAAAACCCACCACATGTGACAAGACAATACCGTTTGTCCATCGGAAAGACTGTAAAATCCAAAATAAGGCTACACCTCAAGTTTCTTGTGTTGAATGTCGTGGAGAGATGTCCTGTTTCCTTCTCATAGAAAAAGAAAAGTCTATGGTTATGGTGCTCAGGAACATGGTTGGACCTGAAGACGTAGATGATGATCTGGAAGGAGAAGTAACGGAGGAATGTGGGAAGTTCGGAGCCGTTAATAGAGTGATCATTTACCAGGAGAAGCAGGGTGAGGAGGAGGATGCCGAAGTCATTGTGAAGATCTTCGTAGAGTTTTCAGCAGCATCAGAGATGAACAAGGCCATTCAGGCGCTCAACAACCGCTGGTTCGGAGGTCGCAAGGTCATCGCTGAGGTGTACGATCAGGAACGGTTTGACAACAGTGACCTCTCCGCATAGACTGTCAAATACATCCTGCCCTTCATAACTTTTTCTTCTCTCTCATATCTCTCCTTTTCCTCTTTCACACTTACACAGACGCAGCCGCCAGCCACTCTTCCCAGTGGTACTGGCTTCTCTTTATAACTTGTAATTATTTTTTATCGATGTTGATATTAATATTATTAATGATCCCTTCTTGGGACAGAGGCAAGGAAACGCTCATGAATATTTTTTTTATTGTTGCTGTACTTTAATGTGAATGACTGGATGCCCCTCCCCCTTTTTTGGTTCATTGGTTTACTCCCCATTCCACCAATCAGATGTTGTTCAAATTCAGTTTTTTGTTTTTTTCCCCTTCCTCTTATTGTTTAAAATATTGTCAATAGCCTGTTATGATGCTCTTGGTTTCAAATGCCAGAACAATAAA

Function

symbol description
puf60a Predicted to enable RNA binding activity. Predicted to be involved in alternative mRNA splicing, via spliceosome; mRNA splice site selection; and regulation of alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Is expressed in central nervous system and pharynx. Orthologous to human PUF60 (poly(U) binding splicing factor 60).
puf60 Enables identical protein binding activity. Predicted to be involved in alternative mRNA splicing, via spliceosome; mRNA splice site selection; and regulation of alternative mRNA splicing, via spliceosome. Located in cell junction and nucleoplasm.

GO:

id name namespace
GO:0019907 cyclin-dependent protein kinase activating kinase holoenzyme complex cellular_component

KEGG:

id description
K12838 PUF60; poly(U)-binding-splicing factor PUF60

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_12279303_12308271.mRNA False 2467 mRNA 0.51 14 12278894 12308271

Neighbor

gene id symbol gene type direction distance location
CI01000004_12239182_12271760 FASTK coding downstream 6675 12238215 ~ 12272219 (-)
CI01000004_12228586_12231682 NA coding downstream 46832 12228517 ~ 12232062 (-)
CI01000004_12198187_12210149 SMARCD3A, SMARCD3B, SMARCD3 coding downstream 68745 12197912 ~ 12210149 (-)
CI01000004_12191329_12197377 ABCF2B, ABCF2 coding downstream 81517 12190634 ~ 12197377 (-)
CI01000004_12181888_12188055 NA coding downstream 90839 12181579 ~ 12188055 (-)
CI01000004_12315924_12323953 NRBP2, NRBP2A coding upstream 6474 12314745 ~ 12323953 (-)
CI01000004_12345221_12345884 NA coding upstream 36539 12344810 ~ 12346309 (-)
CI01000004_12364142_12368537 BFSP2 coding upstream 55764 12364035 ~ 12368672 (-)
CI01000004_12404227_12411145 PRPF4BA coding upstream 95261 12403532 ~ 12411665 (-)
CI01000004_12550061_12550882 NA coding upstream 241615 12549886 ~ 12550931 (-)
G32258 NA non-coding downstream 81766 12196373 ~ 12197128 (-)
G32177 NA non-coding downstream 99070 12177943 ~ 12179824 (-)
G32256 NA non-coding downstream 112150 12166528 ~ 12166744 (-)
G32240 NA non-coding downstream 287075 11991608 ~ 11991819 (-)
G32239 NA non-coding downstream 291067 11987529 ~ 11987827 (-)
G32261 NA non-coding upstream 43748 12352019 ~ 12352451 (-)
G32264 NA non-coding upstream 111161 12419432 ~ 12419839 (-)
G32266 NA non-coding upstream 115318 12423589 ~ 12423850 (-)
G32267 NA non-coding upstream 115890 12424161 ~ 12424469 (-)
G32276 NA non-coding upstream 151329 12459600 ~ 12459828 (-)
G32150 NA other downstream 497943 11776519 ~ 11780951 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other downstream 865987 11406957 ~ 11412907 (-)
G31203 NA other downstream 1528253 10746437 ~ 10750641 (-)
G30316 NA other downstream 2871973 9377937 ~ 9406921 (-)
G29746 NA other downstream 3920767 8354498 ~ 8358127 (-)
G32207 NA other upstream 67897 12376168 ~ 12384780 (-)
CI01000004_14543631_14551256 NA other upstream 2242529 14541515 ~ 14551352 (-)
G33746 NA other upstream 2260522 14568793 ~ 14569264 (-)
G33750 NA other upstream 2270187 14578458 ~ 14579001 (-)
G33755 NA other upstream 2273135 14581406 ~ 14581873 (-)
CI01000004_12170772_12177138 TTC19 coding downstream 90749 12170517 ~ 12177138 (-)
CI01000004_12574165_12577698 NA coding upstream 251967 12574085 ~ 12580179 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location