CI01000004_12315924_12323953 (NRBP2, NRBP2A)


Basic Information

Item Value
gene id CI01000004_12315924_12323953
gene name NRBP2, NRBP2A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 12314745 ~ 12323953 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_12315924_12323953.mRNA
GTCAGTCAGGGAAATGTCCCAGGCATTGAGAGTGCGTACTTGGCCATGGACACTGAAGAGGGGGTGGAGGTGGTGTGGAACGAAGTGCAGTTTTCAGACAAGAAGGTTTTCAAGTCCTTTGAGGAGCGGATACGAGAGATGTTTGAGAACCTGATGCAGGTGGAGCATCCGAACATCGTAAAGTTTCACAAGTACTGGCTGGACATGAGAGAGAGCAGAGCAAGGGTGATTTTTATTACTGAGTATATGTCATCTGGAAGTCTCAAGCAGTTTTTGAAGAAGACCAAGAAAAATCACAAAACTATGAATGTGAAGTATTTGCTGAAGCGATTCATGGGAATGTGCATCAACATCGAGATGAAATGCGTAACCAGCATTTTTTTGCTCCGGAGTATGGAAATGGCAGTATTGGAAATCCAGGCTAATGGGGATGCTGCAGTTTCGAAAGAGGCCATTGATCATGCTGGAGAGTCACTTGAGGACCCTCTCATGAGGGAATTTATCCAGTCGTGTGTGCGCACAGAAGCCAAGTCGAGACCCACGGCTCATGACCTGCTGTTCCACAGAGTGTTATTTGAGGTCCACTCCTTAAAACTGCTTGCTGCGCATTGCTTTATCAATAACCAGTATCTCCTCCCTGAGAATTGTGTGGAAGAAAAGACCAAATCTTTTGACCCTAATGGTATCATGGCAGAGATTAATCATCGTGACCGACCTGGAGTCCATCTAAAGTATTCTCACGTCTCACCTCTGGAGCTGGACAAATTCCTTGAGGATGTGAAAAATGGCATATATCCGCTGATGAACTTTGCTTCCCACCGGCCGCATCCTATCCCCCGCGCTCTTTCTTTGTCGCAGGAACAGATGGAGACTGTGAAGACCCCAACCCCAGAACCACAGGAGACTGAAACCAGAAAGGTTGTCCAGATCCACTGTAATCTGGAAGCAAATGAGGAAGGCACAAGGAGTCATGAAGACTGTGAGAAGTTGGCATGTTTCCTTGAGGATGCATTATCTGGTCCCATAATAGACAGACAGTGCTTGAAGACTGAGCCAGAGCTTGACAAAAAGAGAGAGCGAAAGATCCAGATTGACAAGAGGGAAATGAGACCAAAAGTGCAACATTACATAATGAAGGTCATGACAAGATGGCTTGAGAATGAGCGATGGACCTGGGAAGAAAGCTCACACCACACCGCATGGTACCTCCACAAACTCCAAAGAGCTCAAACTGTTAACTTTGATCTTGAAGTTTAATTACTGATGTCATTTTACTATAACGAAGAAATACATTTCCATTACTTGCAGAGATTCTGCCTTCAGTGCCAGCATTTTGGGTTGTGAATTTTTTTTTAAATGACAGATTTTTAAAAACATCTTGTCTATGGCGTAATCCATCCTTATCTAGCAAAGGACAAGGTTTCACACAAACAGATGATTTTAGGATGACAGAGCTTCAGGAACCTGAGAGAGGAGGCTAAGTGTCCAAGAATATTTGCTGCTTCCCATCAGGCAATATAATTGGAGTCAAATGTATTATTTATTATTTTAAACAATTAATACATGGTCTTGGTATACATGTTTAAAAGGAAAACGTATCAAAATGTTTAATTCTACATTATCGTATTCTGTATGCTTTAACAAGCTGACGTTGAGCAAACGAATGTATGGTACAATGACAAGTGCTCTTGGAACCTGCTATAATTATATTTCTTTTTCGAAAAAATTCAGACTTTAACTTAATTTCTTGCTCTTAATGTGAAGTGATTCTTACAGAGTTTAAAATGTCTCCGTTCTGAATTGCTTCTATGACACTATGTTGGTCTCAATAACTTTTCTCATGCAGACAGTAATGAACATAGCAAATATTTGTAAACCGTGGCAATAATGGTATCCTAGAATGGTATACTATCATTTAAAAGTTTAGGGTCAGTGAGATTTTATGTTTTGAAAGAAATTAATACTTTTATTCAGCAAGGACGCATTAAATTGATCAAAAGTGACAGTAAAGACTTGCATTGTAAAAAAAGAATCTATCCTGAAATAAATGCTGTTCTTTTGAACTTTCTTTTCAAGAATCCTGAGGAAAAAAAAAAATCTGAGTTTACACATAAATATCAGGCAGCACAACTGTTTTCAACAATGATAATAATAAGAAATGTTACTTGAGCACCAAATAAAAAATCTTGAGCATTCAGTTTTGCCACCACAGGAATAAATTACATTTTAAAATAAAATATAAAACAATACTTTTTACTGTATTTTTGATCAAATAAATGCAGCCTGAGTGAAGTTCGATCTAATATCTGGATGAAGTGCAGAAGAGCACTTCATCCAGATGTCTTTTACCAAGAAAATGGTTCAACTAATGAGTAGCTGTCCAAATTCATTAACTCTTTCCCTGCCTTCATTTTTTTTTTTTTTCCTAAAAATAAA

Function

symbol description
nrbp2a Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport; intracellular signal transduction; and protein phosphorylation. Predicted to be active in cytoplasm and endomembrane system. Orthologous to human NRBP2 (nuclear receptor binding protein 2).
nrbp2 Predicted to enable protein serine/threonine kinase activity. Involved in negative regulation of macroautophagy. Predicted to be active in cytoplasm and endomembrane system.

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process

KEGG:

id description
K08875 NRBP; nuclear receptor-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_12315924_12323953.mRNA True 2436 mRNA 0.39 12 12314745 12323953

Neighbor

gene id symbol gene type direction distance location
CI01000004_12279303_12308271 PUF60, PUF60A coding downstream 6474 12278894 ~ 12308271 (-)
CI01000004_12239182_12271760 FASTK coding downstream 42526 12238215 ~ 12272219 (-)
CI01000004_12228586_12231682 NA coding downstream 82683 12228517 ~ 12232062 (-)
CI01000004_12198187_12210149 SMARCD3A, SMARCD3B, SMARCD3 coding downstream 104596 12197912 ~ 12210149 (-)
CI01000004_12191329_12197377 ABCF2B, ABCF2 coding downstream 117368 12190634 ~ 12197377 (-)
CI01000004_12345221_12345884 NA coding upstream 20857 12344810 ~ 12346309 (-)
CI01000004_12364142_12368537 BFSP2 coding upstream 40082 12364035 ~ 12368672 (-)
CI01000004_12404227_12411145 PRPF4BA coding upstream 79579 12403532 ~ 12411665 (-)
CI01000004_12550061_12550882 NA coding upstream 225933 12549886 ~ 12550931 (-)
CI01000004_12574165_12577698 NA coding upstream 250132 12574085 ~ 12580179 (-)
G32200 NA non-coding downstream 27965 12282650 ~ 12286780 (-)
G32258 NA non-coding downstream 117617 12196373 ~ 12197128 (-)
G32177 NA non-coding downstream 134921 12177943 ~ 12179824 (-)
G32256 NA non-coding downstream 148001 12166528 ~ 12166744 (-)
G32240 NA non-coding downstream 322926 11991608 ~ 11991819 (-)
G32261 NA non-coding upstream 28066 12352019 ~ 12352451 (-)
G32264 NA non-coding upstream 95479 12419432 ~ 12419839 (-)
G32266 NA non-coding upstream 99636 12423589 ~ 12423850 (-)
G32267 NA non-coding upstream 100208 12424161 ~ 12424469 (-)
G32276 NA non-coding upstream 135647 12459600 ~ 12459828 (-)
G32150 NA other downstream 533794 11776519 ~ 11780951 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other downstream 901838 11406957 ~ 11412907 (-)
G31203 NA other downstream 1564104 10746437 ~ 10750641 (-)
G30316 NA other downstream 2907824 9377937 ~ 9406921 (-)
G29746 NA other downstream 3956618 8354498 ~ 8358127 (-)
G32207 NA other upstream 52215 12376168 ~ 12384780 (-)
CI01000004_14543631_14551256 NA other upstream 2226847 14541515 ~ 14551352 (-)
G33746 NA other upstream 2244840 14568793 ~ 14569264 (-)
G33750 NA other upstream 2254505 14578458 ~ 14579001 (-)
G33755 NA other upstream 2257453 14581406 ~ 14581873 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G34297 NA non-coding CI01000004 null 16301233 ~ 16309306 (+)
bowfin (Amia calva) G31038 nrbp2,LOC108267406,LOC108413492 non-coding CM030124.1 CM030124.1 1732585 ~ 1733587 (-)
mexican tetra (Astyanax mexicanus) G140074 nrbp2,LOC108267406,LOC108413492,LOC106597174 non-coding NC_035912.1 CM008315.1 9597473 ~ 9609161 (+)