XLOC_000697


Basic Information

Item Value
gene id XLOC_000697
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 53760797 ~ 53770739 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002880
CTAAAATCTAGTGAATTTTAGGCCACTGGAGTCCTTTAGTCCAGTAAAGAGTGTATATTTGATCCTGGCGTCAGTATCAGTGTCTCGGTGTCAGATTTCTGTGAAACCCAAGCACTGTTGTCCATCAGGACTCTCAGCCAAATGAATCTCCACAGTGAATGAACACACACAGGAGTTCGGAGCAGGATGGCCGGATCGGGAGCTGCTCTGAGGATACATGAGTTCAGAGACAATCAGAACTTACAAAAACAGCAGCCGACACATGCCGTTCATCGCCAGGGCAGAGATGTTATAGGACTTTATCCTGGTCAGATTGGAAGAGTTCATGCGGTCAGCTCACATTTGGACCGAATGACGCTGAAGGCTCCAGACCTGCAGTGTTATTATGAATGTAAAGCAGGGAAGTGTTTTCAGAGGGCAAATTGGGATCAGCTTGCCCTGCAGGCCTCACTTCTGTCTGAACGGCGAGAAACACATCCATCAAACTCAAGAAATGCACAGAAAAAGTCACTAATGCTGAAGATTAAGACACTGGTTTCCAGAAGTTCACATTGTATTCGCACCCAAAACCGCTGGAGGAGCAGCAGAGATGAGAGACATGCAGCCCATGTTCACGCTCCACATAAAGCTCCAATCACAATTAAAAGCAAAAGCACTTGCACTGAGGaaatattgtgtgtttgtttttgtggaaTGTGGTCGTACAATGACACAGCACATCTGTCAAAGCACCGTCTAATTTAATCATTCCTCAGCCACCTTACAAAGGCATGCTTAGGACATATAAATAGGCTATATACAGATATACTGTATGCACAAATGTTTAGCAAATAATAGGATGTTCAGTCGATAGGGGGGATTCAAAGATTAACATGAAAAACGTTTAACGTATTATTGCTTTATGCTTAACTTTTCTGAATGCTTTAATAGAGTTATGTAGAAAGAACAAATTGGgtttatacagatgaagtcagaattattagcccccctgtttatttttccccccaatttctcttaaaaaaagagcagatttattcagcacaattctaaacatgaaaatagttttaataacttatctctaataactgatttattttatttgtgtcatgatgacagtaaataatatttgacttgatatttttcaagacacttctatacagctgacatttaaaggcttaactaggttaattaggtgaactaggcaggttagggtaattaggcaagttattgtataatgatggtttgttctgtagactatcggaaaaaatttgcttaaagaggctaataatattgaccttaaaatggttcattaaaaattaaaaactgcttttattctagccacaataaaacaactaagactttctccagaagaaaaaatattatcagacatactgtgaaaatttccatgctctgttaaagatcatttggtaaatattaaaaataaataaataaataaaagggggcgaataattcggtatatttttattagaaatatttggtgacactttacaatatgggtgccctaatatgcattaattaaagAGGACCTaaaatgctttctttttttttttttttttttttacaagatgtaaaataataagggctgagtttggacacccctgatctaaactcttcatatagaAATATGTTCATTTGTTG
>TCONS_00003173
TGTATATTTGATCCTGGCGTCAGTATCAGTGTCTCGGTGTCAGATTTCTGTGAAACCCAAGCACTGTTGTCCATCAGGACTCTCAGCCAAATGAATCTCCACAGTGAATGAACACACACAGGAGTTCGGAGCAGGATGGCCGGATCGGGAGCTGCTCTGAGGATACATGAGTTCAGAGACAATCAGAACTTACAAAAACAGCAGCCGACACATGCCGTTCATCGCCAGGGCAGAGATGTTATAGGACTTTATCCTGGTCAGATTGGAAGAGTTCATGCGGTCAGCTCACATTTGGACCGAATGACGCTGAAGGCTCCAGACCTGCAGTGTTATTATGAATGTAAAGCAGGGAAGTGTTTTCAGAGGGCAAATTGGGATCAGCTTGCCCTGCAGGCCTCACTTCTGTCTGAACGGCGAGAAACACATCCATCAAACTCAAGAAATGCACAGAAAAacatgtgcaggaa
>TCONS_00003174
TGTATATTTGATCCTGGCGTCAGTATCAGTGTCTCGGTGTCAGATTTCTGTGAAACCCAAGCACTGTTGTCCATCAGGACTCTCAGCCAAATGAATCTCCACAGTGAATGAACACACACAGGAGTTCGGAGCAGGATGGCCGGATCGGGAGCTGCTCTGAGGATACATGAGTTCAGAGACAATCAGAACTTACAAAAACAGCAGCCGACACATGCCGTTCATCGCCAGGGCAGAGATGTTATAGGACTTTATCCTGGTCAGATTGGAAGAGTTCATGCGGTCAGCTCACATTTGGACCGAATGACGCTGAAGGCTCCAGACCTGCAGTGTTATTATGAATGTAAAGCAGGGAAGTGTTTTCAGAGGGCAAATTGGGATCAGCTTGCCCTGCAGGCCTCACTTCTGTCTGAACGGCGAGAAACACATCCATCAAACTCAAGAAATGCACAGAAAAACACTGGTTTCCAGAAGTTCACATTGTATTCGCACCCAAAACCGCTGGAGGAGCAGCAGAGATGAGAGACATGCAGCCCATGTTCACGCTCCACATAAAGCTCCAATCACAATTAAAAGCAAAAGCACTTGCACTGAGG
>TCONS_00002881
GTTGAGTCTTTTctgctttaaataaatatatctacaTTTTTCTTCCTCAGAATGACGCTGAAGGCTCCAGACCTGCAGTGTTATTATGAATGTAAAGCAGGGAAGTGTTTTCAGAGGGCAAATTGGGATCAGCTTGCCCTGCAGGCCTCACTTCTGTCTGAACGGCGAGAAACACATCCATCAAACTCAAGAAATGCACAGAAAAACACTGGTTTCCAGAAGTTCACATTGTATTCGCACCCAAAACCGCTGGAGGAGCAGCAGAGATGAGAGACATGCAGCCCATGTTCACGCTCCACATAAAGCTCCAATCACAATTAAAAGCAAAAGCACTTGCACTGAGGaaatattgtgtgtttgtttttgtggaaTGTGGTCGTACAATGACACAGCACATCTGTCAAAGCACCGTCTAATTTAATCATTCCTCAGCCACCTTACAAAGGCATGCTTAGGACATATAAATAGGCTATATACAGATATACTGTATGCACAAATGTTTAGCAAATAATAGGATGTTCAGTCGATAGGGGGGATTCAAAGATTAACATGAAAAACGTTTAACGTATTATTGCTTTATGCTTAACTTTTCTGAATGCTTTAATAGAGTTATGTAGAAAGAACAAATTGGgtttatacagatgaagtcagaattattagcccccctgtttatttttccccccaatttctcttaaaaaaagagcagatttattcagcacaattctaaacatgaaaatagttttaataacttatctctaataactgatttattttatttgtgtcatgatgacagtaaataatatttgacttgatatttttcaagacacttctatacagctgacatttaaaggcttaactaggttaattaggtgaactaggcaggttagggtaattaggcaagttattgtataatgatggtttgttctgtagactatcggaaaaaatttgcttaaagaggctaataatattgaccttaaaatggttcattaaaaattaaaaactgcttttattctagccacaataaaacaactaagactttctccagaagaaaaaatattatcagacatactgtgaaaatttccatgctctgttaaagatcatttggtaaatattaaaaataaataaataaataaaagggggcgaataattcggtatatttttattagaaatatttggtgacactttacaatatgggtgccctaatatgcattaattaaagAGGACCTaaaatgctttctttttttttttttttttttttacaagatgtaaaataataagggctgagtttggacacccctgatctaaactcttcatatagaAATATGTTCATTTGTTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002880 False 1659 lncRNA 0.37 6 53760797 53770739
TCONS_00003173 False 467 lncRNA 0.48 5 53760848 53767584
TCONS_00003174 False 593 lncRNA 0.48 5 53760848 53769747
TCONS_00002881 True 1336 lncRNA 0.34 2 53765375 53770739

Neighbor

gene id symbol gene type direction distance location
XLOC_000696 pus10 coding upstream 30261 53714734 ~ 53730536 (+)
XLOC_000695 NA coding upstream 65242 53688977 ~ 53695555 (+)
XLOC_000694 NA coding upstream 102508 53656231 ~ 53658289 (+)
XLOC_000693 si:ch211-213b8.4 coding upstream 225232 53515089 ~ 53535565 (+)
XLOC_000692 NA coding upstream 250174 53508505 ~ 53510623 (+)
XLOC_000698 ifngr1 coding downstream 71605 53842344 ~ 53863308 (+)
XLOC_000699 NA coding downstream 93789 53864528 ~ 53865837 (+)
XLOC_000700 nup133 coding downstream 148371 53919110 ~ 53941906 (+)
XLOC_000701 acta1a coding downstream 175195 53945934 ~ 53953532 (+)
XLOC_000702 ccsapa coding downstream 183491 53954230 ~ 53963933 (+)
XLOC_000691 NA non-coding upstream 269492 53490099 ~ 53491305 (+)
XLOC_000689 AL935166.1 non-coding upstream 392763 53364510 ~ 53368034 (+)
XLOC_000703 NA non-coding downstream 211875 53982614 ~ 53988776 (+)
XLOC_000710 CABZ01067150.1 non-coding downstream 415300 54186039 ~ 54186156 (+)
XLOC_000712 NA non-coding downstream 506504 54277243 ~ 54469289 (+)
XLOC_000713 NA non-coding downstream 631194 54401933 ~ 54404147 (+)

Expression


Co-expression Network