CI01000004_12418456_12419641



Basic Information


Item Value
gene id CI01000004_12418456_12419641
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 12417696 ~ 12421019 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>CI01000004_12418456_12419641.mRNA
CTTTAAAATAGTAAGCGATTAAAGGATTGACCAATGCTATGATACAGCAAGTGTAATACTGTGCTTAAAACTACAAGCAAATCCCACCACCAATCCAATAGAAACTGGATTATCCCACCTGTTGCTCAGTGCACGAGCAGCCAAATTTCACTTTAACAGAGGACTACAAGCTTTATTTTGGCCTTTTTAGATGTTTGTTTTAAATATTTTAAGGATATATTTGATTTTAACAACTATTTTGTGTTAACGTATTTACTTTGGGAATAATGAGAGGGAAAAAGTAGGTAAAATTATCTCACTTTGTATTTTTTTTTCAATGACAACGACCAGCGGCACTATACGGCGGCAACCAATGAGATTGCAGTTAGTGACCTGGCGCTTAATGCAATTGGATACTGCTGAGAATAGGAACGCCCACCAGCATCTGACAGGAATAACAGATTCGATGACCTTTAACGGTTTAGTGGCTCTGTGAACTCGAGAAATTCATGATTTTGGATGAGAGTTCACAGGGAATGCGCACAAATGGAGCTTTTAGAGCTCATTATCTGCAGGCGAAGAGGAAAGCGGAGGAGTTTGAAGTTTGTACAACTTGTGTCAGAAGATTTGTATATCCCACGAAAGTAATCTCACGATTTGCGTTCTGATTTTGATGGATATTTTTAAATTTTAGTTTACGTTTTTGCAGCGGAATATATTTTACCTTTTTATCAAATTTAATTTAGAGATAATTTCTATTTAATGTGTTTATGACACAGTTATGGCAGGTGCTGATATGGATTTCTTGCCTCACCTGAGCGTAAATGACTGTTGGGTCGTTGGGCTCGAACGCTTCGCTGTTGGTCCTGCTGGAGAAGAAGAGGAGTTTTTCGAAATTAGGACTGAATGGTCTGAAAAAAGCATAAGATATCTGCGAAGGCGATATCACGATCTAGTGAAACTTGTTAAGAATTTGAGCAAATCATTTCCAGACGACAGAGGACTTTTGCCTCAGTCATTGATGCTTGAGGATGTCAGAAGGGCCAATGGGTTTTGTTTGGCCAATACAGAAACTGTTCTTTTTGATGCGTATTTACTAGCAGAAGGAGGATCAGAGCCATCTTCAAAGTACAGCTCTGAGATTGAGTCCCAGATATGGACCGGAACGAGAATACAAAATGGACTCCAATGTGTTAAGGAAATTGTGCACAAACCTGACAAGGGCTTCATGGCTCTTGGTACCACTGAAAGTAAAGATACAGATTATCAACCTAAAAAATCACCGATTACCACTAGCAACTTGACCTACCTCCACCTACAAGCCTGTGAGACAGATATCCTTGAATGACATAATGCAATTGACCACATAATTACATCTTTCTAGTGTGAAAGTGTACAGAAATGTTTTGTCTTTAAGAATATTTTGTTTTAACTAAAATAATACATTTCTAAATGATTTATAAAATAACTATAAGATTTATAAAAATGGATATGATTAATATTTTTATGATAAGATGAACTGTAATATTAATAAAAAAAAATTAACCAGCTCTGATTAATGTTCTCCCCCCCAAGACCTTTGTTCATTTTCTGGTATTTACAAATCACATAAAATGTTTAGTTAGCTTGAATATTGTGAATGAAGGTTATTTTACACTATGTATATATTAGAGATGCACCGACACTAAATTTCTCCACTGATACGGATAACCCACTATTCAGAGTGATATCTGCCGATACCGATAATTTGGGGGTACTGCCTTTTATACCTTCTTTTAAATGAATGATAATTTCATTATAATTAATAATTAATTATTTTTTAAATTATTTTATTTTGAAAAAAATGCAAATATAACTTTATTCTCTCCATTTCATCAACTCGTTTCAGAGTAACTGGTATCAGTTATAAACAAACACATTACTCAAATTAGTATTAACTAAATTCTGAAGATTAAATTAATATTTCTTAACTTTCTGAATGTTATTAATTCATATAATTACTATTAATATTAAACATCAAACTGGTTTCTTAGCATTTTTTTACACAAAGCACAAATTCAGTGCATTTTCCTGACCTCTTGATTGACAGGATATATCAGTTTATTTTTAAACTAACCGATAAAAGCAAATTTTTACACTATCGGCTATCGGCCGATACCGATTATTGGCCGATATATCGGTGCATCTCTAGTATATATCCTTGGGATATTTTACACTATATAGCCAAATGTATGCTGATATCCGAACACCACACTATATATGTTGTTGAGCATTTAATATCAATTATGAATGAGCATTTAATATAATATCCTTTGCCATTAATGATTTTCATTGTTCTTGTAAATCATTAAACATGTCTACAGGAATATGCTCCCAATCTGACATGTGTCGGTGAATCCAGTTTCTGATGTTGAATGATGGTTCTTCTTCAGTACACAGTAAAAAAACAGTGCCAAATTAAGACTTAAAGTGTTCATTAATTTATGGGCCTCGCTTTGTGCACAAAGGGGGCCTTGTCATGTTGTAAGACACACACACACAAAAAAAAAACCTTGTCACAAATTTGGAAACGCATTATAAAGTATGCCCTTGTATGTCTGAGTATTTTAGATTTTTGTTCCCTGAAATTAAAGGGCCTAGCCAAATAGTTTGCCCATTAATTAGAAGCTGCGGTGCTCACGTGGTACAATAATTTTTGTTTCACTCAAACTCAATTAAAAGTCAAA

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
CI01000004_12418456_12419641.mRNA True 2705 mRNA 0.34 3 12417696 12421019
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Neighbor


gene id symbol gene type direction distance location
CI01000004_12412259_12417501 NA coding upstream 179 12412135 ~ 12417517 (+)
CI01000004_12393203_12398519 NA coding upstream 18404 12392504 ~ 12399292 (+)
CI01000004_12390372_12391923 CCR9A coding upstream 25516 12390372 ~ 12392180 (+)
CI01000004_12376518_12381495 NA coding upstream 35991 12376424 ~ 12381705 (+)
CI01000004_12362858_12363136 NA coding upstream 54560 12362807 ~ 12363136 (+)
CI01000004_12422242_12423747 OPN4.1 coding downstream 1061 12422080 ~ 12424693 (+)
CI01000004_12426409_12429382 TMEM53 coding downstream 5390 12426409 ~ 12429470 (+)
CI01000004_12553125_12559468 NA coding downstream 131755 12552774 ~ 12559876 (+)
CI01000004_12562823_12563491 NA coding downstream 140299 12561318 ~ 12563813 (+)
CI01000004_12594138_12621268 NA coding downstream 172144 12593163 ~ 12621791 (+)
G31939 NA non-coding upstream 21070 12396391 ~ 12396626 (+)
G31930 NA non-coding upstream 66214 12351282 ~ 12351482 (+)
G31874 NA non-coding upstream 112827 12302619 ~ 12304869 (+)
G31863 NA non-coding upstream 120687 12278880 ~ 12297009 (+)
G31881 NA non-coding upstream 147207 12269833 ~ 12270489 (+)
G31952 NA non-coding downstream 41511 12462530 ~ 12463374 (+)
G31959 NA non-coding downstream 52104 12473123 ~ 12473405 (+)
G31967 NA non-coding downstream 63679 12484698 ~ 12484906 (+)
G31969 NA non-coding downstream 65914 12486933 ~ 12487443 (+)
G32296 NA non-coding downstream 80459 12501478 ~ 12501881 (+)
G31865 NA other upstream 222549 12192130 ~ 12197418 (+)
CI01000004_11666900_11667179 NA other upstream 750037 11666900 ~ 11667659 (+)
G31710 NA other upstream 775296 11637251 ~ 11642400 (+)
G30797 NA other upstream 1919908 10497376 ~ 10497788 (+)
CI01000004_08976512_08980033 TTPA other upstream 3436712 8976254 ~ 8980984 (+)
CI01000004_12646972_12652534 NA other downstream 221735 12646838 ~ 12652570 (+)
CI01000004_14036114_14036449 KIAA0040 other downstream 1602528 14035393 ~ 14039142 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other downstream 2670225 15091200 ~ 15097173 (+)
G34220 NA other downstream 3518338 15939357 ~ 15939950 (+)
G33815 NA other downstream 3642396 16063415 ~ 16066464 (+)

Expression


CI01000004_12418456_12419641 Expression in PRJCA010000

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The chart has 1 X axis displaying categories.
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CI01000004_12418456_12419641 Expression in each Bioproject

Bar chart with 42 bars.
CI01000004_12418456_12419641 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
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Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015580 pxdc1a coding NC_007113.7 CM002886.2 32835679 ~ 32838894 (+)