CI01000004_12422242_12423747 (OPN4.1)



Basic Information


Item Value
gene id CI01000004_12422242_12423747
gene name OPN4.1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 12422080 ~ 12424693 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>CI01000004_12422242_12423747.mRNA
ATATAAAAAGCTAATGTAGGGAGCCATCATTCACAGACTGACACGGAGAGGAGAACAGCACTGTTTATTTAAAACGAGAATTTAACCACTTTTTCACTTATTTTAACAGAATTACCTTCAGTTTTGTTTACAAGAAATTTAGGAAACATCAAGCCACAAAACATGAGCCATCACTCTTCATGGAGAGGGCATCATTGTCCCCCTGGAGACATCAACTGCACAGCAGGCTTTAAGGAGTCTTTGGCCAGCAGGAACTACAAGTTACTCCATGTGCCTTTCCATGGGCCGACCCACAGCCACCACCATGAGCCTCCACACCCGTTTCCCACCGTGGATGTTCCTGATCATGCCCACTACATCATCGGCTCTGTCATCTTAATGGTTGGCATCACTGGAGTGATTGGAAACGCACTGGTGATCTACGTGTTCTGCCGGAGCCGAACTCTTCGCACTGCAGGGAATATGTTTGTGGTGAACCTGGCTGTAGCTGATTTCTTCATGTCCCTCACTCAGTCGCCCATGTTCTTCGCGGCCAGCCTGCACAGGCGCTGGGTCTTTGGTGAGCGCATTTGTGAGCTCTATGCCTTTTGCGGTGCCCTCTTTGGGATCTGTTCCATGATGACTTTGACTGCCATTGCTGCCGATCGCTGCCTAGCCATAACTCAGCCTCTCGCCTTGGTGGGCAATGTTAGCCGACGCAAAGCAGGTGCGGTGTTGGCCGTTGTGTGGCTCTACTCTCTGGGCTGGAGCCTTCCACCTTTCTTTGGCTGGAGCGCTTATGTTCCAGAGGGGCTTCAGACTTCCTGTTCTTGGGACTACATGACCTTCACTCCATCAGTTCGTGCGTACACCATCCTCCTCTTCATTTTTGTGTTCTTCATCCCACTCGGCATTATTGGAAGCTGCTACTTTGGAATTTTCCAAGCTATCCGAGCAACAGGGAAGGAAATTAGAGAGCTGGATTGTGGGGAAACGCACAAGGTGTATGAACGCATACAGAACGAATGGAAGATGGCAAAAGTCGCACTCCTGGTCATTTTGCTTTTTGTAATATCCTGGTCGCCCTACTCTGTGGTGGCCCTCACCGCCACGGCTGGCTATTCCCATCTCCTGACCCCCTACATGAATTCAGTACCCGCTGTGATTGCCAAGGCCTCAGCCATCCATAATCCCATCATCTACGCAATTACGCATCCAAAGTATCGGGCGGCTATTGCCCGCTACATTCCAATACTCCGCTTCATCTTACGTGTGAAAGAGAAGGATCTCCGTTCCTCTTTTAGTTCTGGCAGCGTTAGTTCCCGTCGTCCGACCCTCAGCAGCCAGTGCTCCCTGGGAGTTAGCATCGGCAATGCAGCGCGAGCTAACGGCCGCTGGGGAAAGACACGCTTATCATCTGCTTCAGATAGTGATTCTTGCTGGACTGAGAGTGAGGCTGATGGTTCCAGCGTCAGTTCCCTGACCTTTGGTCGTCGTGTGTCCACCGAGATCTCTACAGATACTGTCATTCTTTCACCAGGGTCAAGTACTAGCACCACCAGCGGGCAGAAATCAGAGAAAGCACACAAAGTTGTAAGCGCACCAGTGCCATCTATTACTTTTGAATCAGATGCTGCAGATGGGGAGTCTCTGTCTGATGGAAAGGCTTTGCTTCCCAGGGGGAACTAAGGGAATGATGCAGCGCTTCAGTGGTGGGCTCGTTACTCAAATTTATAATTAATTAGTAATTTATTACTAGTTACTCCTTTCAAAAGTAATATTGTTACTTTACTTTTTACTTTCTGGCAACAGTAATTAGTTACAGTACTAGTTATATTACTTTTCTTTTTCGCCCCACAGAAGTTGTAATTGTGTATCCCCATAAAATGTTACTAACAACATAATTCTGCCTCATCATTTCACCAAAATCCACAATGGATAGCAGTCAGAAGTTATTACAAACACTCAATGGTGACTTTAAAAGGGTACATAACACACAGTTTCGGCCAATCTCATGTTAATCTTGAGTACCTATAGCTTAGTATAGCATCCTTCATATCTCCGAAAAGTCTTTAGTTTTATCAGATTTATACAAGAAAGATAAGCTGTACCGAGTCTTTCTGAAAACAGCCGAGCTCCCGGAGGCGAGGCTAAAGAGTGATGAGCACGTGCAGCTTTTGCGTAGCGAAGCTATCAATGGTCAGCTAAACAAATGCACTTATGCGCTGACTGCCAACAAAACAGACATTTGAAGCAGTTTTACTCACCACCTGCGGTTCCGACTCATGACCAGGATCATTATCGCTGTGACCGCTCCATCTTTCAGTTTCAAACAATCTGTAAATCCAGCGTCGAACTGGGCCTTGTTTATAAAACCATAAGCACCGATCCTGAGGGCTCGAACAGCCACAGAAAACACGAGATATTCTCCATTCATTTTAACCAATAAAAAAGTGATTGCAACTTTCAGACTCTTGTTCTGGTTAATGAGTACGCCCAACTCGTTTTTTGAAACTTTGTCCATGTTTAGCAAGAGAATCCAACTCTTTAACAGTGTAAATAAGTCAGAATGCATGAAATAGCATTAGACCCCCCCTTTAAGTAAAAGTGTTGTATTAATTTCATTAATTGTATT

Function


symbol description
opn4.1 Enables photoreceptor activity. Acts upstream of or within light-induced release of internally sequestered calcium ion. Predicted to be located in plasma membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; heart; integument; testis; and visual system. Orthologous to human OPN4 (opsin 4).

NR:

description
melanopsin

GO:

id name namespace
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG:

id description
K04255 OPN4, Rh2_7; r-opsin

RNA


RNA id representative length rna type GC content exon number start site end site
CI01000004_12422242_12423747.mRNA True 2614 mRNA 0.46 1 12422080 12424693
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Neighbor


gene id symbol gene type direction distance location
CI01000004_12418456_12419641 NA coding upstream 1061 12417696 ~ 12421019 (+)
CI01000004_12412259_12417501 NA coding upstream 4563 12412135 ~ 12417517 (+)
CI01000004_12393203_12398519 NA coding upstream 22788 12392504 ~ 12399292 (+)
CI01000004_12390372_12391923 CCR9A coding upstream 29900 12390372 ~ 12392180 (+)
CI01000004_12376518_12381495 NA coding upstream 40375 12376424 ~ 12381705 (+)
CI01000004_12426409_12429382 TMEM53 coding downstream 1716 12426409 ~ 12429470 (+)
CI01000004_12553125_12559468 NA coding downstream 128081 12552774 ~ 12559876 (+)
CI01000004_12562823_12563491 NA coding downstream 136625 12561318 ~ 12563813 (+)
CI01000004_12594138_12621268 NA coding downstream 168470 12593163 ~ 12621791 (+)
CI01000004_12625701_12630744 NA coding downstream 199628 12624321 ~ 12630926 (+)
G31939 NA non-coding upstream 25454 12396391 ~ 12396626 (+)
G31930 NA non-coding upstream 70598 12351282 ~ 12351482 (+)
G31874 NA non-coding upstream 117211 12302619 ~ 12304869 (+)
G31863 NA non-coding upstream 125071 12278880 ~ 12297009 (+)
G31881 NA non-coding upstream 151591 12269833 ~ 12270489 (+)
G31952 NA non-coding downstream 37837 12462530 ~ 12463374 (+)
G31959 NA non-coding downstream 48430 12473123 ~ 12473405 (+)
G31967 NA non-coding downstream 60005 12484698 ~ 12484906 (+)
G31969 NA non-coding downstream 62240 12486933 ~ 12487443 (+)
G32296 NA non-coding downstream 76785 12501478 ~ 12501881 (+)
G31865 NA other upstream 226933 12192130 ~ 12197418 (+)
CI01000004_11666900_11667179 NA other upstream 754421 11666900 ~ 11667659 (+)
G31710 NA other upstream 779680 11637251 ~ 11642400 (+)
G30797 NA other upstream 1924292 10497376 ~ 10497788 (+)
CI01000004_08976512_08980033 TTPA other upstream 3441096 8976254 ~ 8980984 (+)
CI01000004_12646972_12652534 NA other downstream 218061 12646838 ~ 12652570 (+)
CI01000004_14036114_14036449 KIAA0040 other downstream 1598854 14035393 ~ 14039142 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other downstream 2666551 15091200 ~ 15097173 (+)
G34220 NA other downstream 3514664 15939357 ~ 15939950 (+)
G33815 NA other downstream 3638722 16063415 ~ 16066464 (+)

Expression


CI01000004_12422242_12423747(OPN4.1) Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
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CI01000004_12422242_12423747(OPN4.1) Expression in each Bioproject

Bar chart with 38 bars.
CI01000004_12422242_12423747(OPN4.1) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 10.
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Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015581 opn4.1 coding NC_007113.7 CM002886.2 32843133 ~ 32846324 (+)