Item | Value |
---|---|
gene id | CI01000004_12422242_12423747 |
gene name | OPN4.1 |
gene type | coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000004 |
NCBI id | null |
chromosome length | 17451736 |
location | 12422080 ~ 12424693 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
symbol | description |
---|---|
opn4.1 | Enables photoreceptor activity. Acts upstream of or within light-induced release of internally sequestered calcium ion. Predicted to be located in plasma membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; heart; integument; testis; and visual system. Orthologous to human OPN4 (opsin 4). |
description |
---|
melanopsin |
id | name | namespace |
---|---|---|
GO:0008020 | G protein-coupled photoreceptor activity | molecular_function |
id | description |
---|---|
K04255 | OPN4, Rh2_7; r-opsin |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
CI01000004_12422242_12423747.mRNA | True | 2614 | mRNA | 0.46 | 1 | 12422080 | 12424693 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000004_12418456_12419641 | NA | coding | upstream | 1061 | 12417696 ~ 12421019 (+) |
CI01000004_12412259_12417501 | NA | coding | upstream | 4563 | 12412135 ~ 12417517 (+) |
CI01000004_12393203_12398519 | NA | coding | upstream | 22788 | 12392504 ~ 12399292 (+) |
CI01000004_12390372_12391923 | CCR9A | coding | upstream | 29900 | 12390372 ~ 12392180 (+) |
CI01000004_12376518_12381495 | NA | coding | upstream | 40375 | 12376424 ~ 12381705 (+) |
CI01000004_12426409_12429382 | TMEM53 | coding | downstream | 1716 | 12426409 ~ 12429470 (+) |
CI01000004_12553125_12559468 | NA | coding | downstream | 128081 | 12552774 ~ 12559876 (+) |
CI01000004_12562823_12563491 | NA | coding | downstream | 136625 | 12561318 ~ 12563813 (+) |
CI01000004_12594138_12621268 | NA | coding | downstream | 168470 | 12593163 ~ 12621791 (+) |
CI01000004_12625701_12630744 | NA | coding | downstream | 199628 | 12624321 ~ 12630926 (+) |
G31939 | NA | non-coding | upstream | 25454 | 12396391 ~ 12396626 (+) |
G31930 | NA | non-coding | upstream | 70598 | 12351282 ~ 12351482 (+) |
G31874 | NA | non-coding | upstream | 117211 | 12302619 ~ 12304869 (+) |
G31863 | NA | non-coding | upstream | 125071 | 12278880 ~ 12297009 (+) |
G31881 | NA | non-coding | upstream | 151591 | 12269833 ~ 12270489 (+) |
G31952 | NA | non-coding | downstream | 37837 | 12462530 ~ 12463374 (+) |
G31959 | NA | non-coding | downstream | 48430 | 12473123 ~ 12473405 (+) |
G31967 | NA | non-coding | downstream | 60005 | 12484698 ~ 12484906 (+) |
G31969 | NA | non-coding | downstream | 62240 | 12486933 ~ 12487443 (+) |
G32296 | NA | non-coding | downstream | 76785 | 12501478 ~ 12501881 (+) |
G31865 | NA | other | upstream | 226933 | 12192130 ~ 12197418 (+) |
CI01000004_11666900_11667179 | NA | other | upstream | 754421 | 11666900 ~ 11667659 (+) |
G31710 | NA | other | upstream | 779680 | 11637251 ~ 11642400 (+) |
G30797 | NA | other | upstream | 1924292 | 10497376 ~ 10497788 (+) |
CI01000004_08976512_08980033 | TTPA | other | upstream | 3441096 | 8976254 ~ 8980984 (+) |
CI01000004_12646972_12652534 | NA | other | downstream | 218061 | 12646838 ~ 12652570 (+) |
CI01000004_14036114_14036449 | KIAA0040 | other | downstream | 1598854 | 14035393 ~ 14039142 (+) |
CI01000004_15091390_15096502 | GA45B, GADD45B, GADD45BB | other | downstream | 2666551 | 15091200 ~ 15097173 (+) |
G34220 | NA | other | downstream | 3514664 | 15939357 ~ 15939950 (+) |
G33815 | NA | other | downstream | 3638722 | 16063415 ~ 16066464 (+) |
species | gene id | symbol | gene type | chromosome | NCBI id | location |
---|---|---|---|---|---|---|
zebrafish (Danio rerio) | XLOC_015581 | opn4.1 | coding | NC_007113.7 | CM002886.2 | 32843133 ~ 32846324 (+) |