CI01000004_12426409_12429382 (TMEM53)



Basic Information


Item Value
gene id CI01000004_12426409_12429382
gene name TMEM53
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 12426409 ~ 12429470 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>CI01000004_12426409_12429382.mRNA
ACTTCACTCGTGTTGTATTATCGTGTATCGCCCCTGTATGTGACTGTCCGCTCAGCAGCACAAGAGCAGTGAAACGCGACACTCATTTGAAGCGAATTATTAATGGCAGACAGACGACTGAGGAAATAACTGTCAATATGGGGGATGATGATATAGACTACAACATAGTTTTTCCAGAGGCACTGATCTCAGAGAAACACTGGCGCGGATCAAAGGAGCCAGTGGTTATTCTCCTAGGCTGGGCGGGCAGCAGAGACAAACATCTCGCCAAATACAGCTCCATTTATAATGAACAGGGATGCGTGACTCTACGCTACACGGCTCCTTTGAAGACTGTCTTTATTTCAGAACCGTTGGGCTACAAGGAACTAAGAAGCACCGCGCACAAATTACTTGAACTTCTGTATGACTACGAGGTGGAGAACAGCCCAATTTTCTTCCATGTGTTCAGCAATGGGGGCTTCATGCTTTACCGTTACATGGTTGAGTTATTGCACAGTCACAAGCAGTTCAGCACACTGTATGTGGTGGGAACCGTTGTGGACAGTGCCCCGGGCAGCCAAAACATTATAGGAGCGCTCAGAGCACTCAAAACCACTTTAGGGCCTAAAGTCAATGTGCTACTGCAGTACTTCCTCCTGGCACTGTTTGCTGTGGCGGTTTTCCTTCTCAGGATTGTTCTGTATCCTGTGACCAAGTACTTTCACAAGAACCACTATGATGCCATGACGGACCACCCGGCACCTTGGCCTCAGATGTACCTCTATTCCAGAGCAGACCGGGTGATCAGGTACAGGGATGTGGAGAAGATGGTTAAAGTTTTGCGAGAGAAAGGGTTGACGGTTGAAAGTTTTGATTTCATCACCCCTGCCCATGTGAGCCTGTACAGAGACTGTCCAGAGGACTATTCCAACAGGTGCAGGACGTTTCTGACCCGCTGCATGACTACTTCAGAGGAGACCCTGACGAAAAAGCGCCTCCAAGTGCATCACTGATTATACAGTTCTTGACCGGCTATATAATATACACACTGTAAATTTATATGTGCATATGCTATTTGTGAAATATACGCACTGCTGTTTA

Function


symbol description
tmem53 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM53 (transmembrane protein 53).

GO:

id name namespace
GO:0008150 biological_process biological_process

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
CI01000004_12426409_12429382.mRNA True 1083 mRNA 0.47 3 12426409 12429470
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Neighbor


gene id symbol gene type direction distance location
CI01000004_12422242_12423747 OPN4.1 coding upstream 1716 12422080 ~ 12424693 (+)
CI01000004_12418456_12419641 NA coding upstream 5390 12417696 ~ 12421019 (+)
CI01000004_12412259_12417501 NA coding upstream 8892 12412135 ~ 12417517 (+)
CI01000004_12393203_12398519 NA coding upstream 27117 12392504 ~ 12399292 (+)
CI01000004_12390372_12391923 CCR9A coding upstream 34229 12390372 ~ 12392180 (+)
CI01000004_12553125_12559468 NA coding downstream 123304 12552774 ~ 12559876 (+)
CI01000004_12562823_12563491 NA coding downstream 131848 12561318 ~ 12563813 (+)
CI01000004_12594138_12621268 NA coding downstream 163693 12593163 ~ 12621791 (+)
CI01000004_12625701_12630744 NA coding downstream 194851 12624321 ~ 12630926 (+)
CI01000004_12646972_12652534 NA coding downstream 217368 12646838 ~ 12652570 (+)
G31939 NA non-coding upstream 29783 12396391 ~ 12396626 (+)
G31930 NA non-coding upstream 74927 12351282 ~ 12351482 (+)
G31874 NA non-coding upstream 121540 12302619 ~ 12304869 (+)
G31863 NA non-coding upstream 129400 12278880 ~ 12297009 (+)
G31881 NA non-coding upstream 155920 12269833 ~ 12270489 (+)
G31952 NA non-coding downstream 33060 12462530 ~ 12463374 (+)
G31959 NA non-coding downstream 43653 12473123 ~ 12473405 (+)
G31967 NA non-coding downstream 55228 12484698 ~ 12484906 (+)
G31969 NA non-coding downstream 57463 12486933 ~ 12487443 (+)
G32296 NA non-coding downstream 72008 12501478 ~ 12501881 (+)
G31865 NA other upstream 231262 12192130 ~ 12197418 (+)
CI01000004_11666900_11667179 NA other upstream 758750 11666900 ~ 11667659 (+)
G31710 NA other upstream 784009 11637251 ~ 11642400 (+)
G30797 NA other upstream 1928621 10497376 ~ 10497788 (+)
CI01000004_08976512_08980033 TTPA other upstream 3445425 8976254 ~ 8980984 (+)
CI01000004_14036114_14036449 KIAA0040 other downstream 1594077 14035393 ~ 14039142 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other downstream 2661774 15091200 ~ 15097173 (+)
G34220 NA other downstream 3509887 15939357 ~ 15939950 (+)
G33815 NA other downstream 3633945 16063415 ~ 16066464 (+)

Expression


CI01000004_12426409_12429382(TMEM53) Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 75.
End of interactive chart.

CI01000004_12426409_12429382(TMEM53) Expression in each Bioproject

Bar chart with 44 bars.
CI01000004_12426409_12429382(TMEM53) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 500.
End of interactive chart.

Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015582 tmem53 coding NC_007113.7 CM002886.2 32846602 ~ 32850621 (+)