CI01000004_12553125_12559468


Basic Information

Item Value
gene id CI01000004_12553125_12559468
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 12552774 ~ 12559876 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_12553125_12559468.mRNA
GAATAAAAAGCATGTTTTCCGTTTTTGTTTTTTTGCAGATTGACAAATGAGTTTAAAACGCATTCGTGGCACTTATTCAACTTAAGTAGCAGGTATGTGCAAAAAAATAAGCAACAAGTAGACTGGAATTACGTTTTACAACACGTAAAAACACTCATATGCGACTTAAAATAGCTAAAGATAAACTCGCGAGCAAGCCAGTGCGCGCGATGGGACGCCTCACACTTACCTATTTCTGTAAAGACCTCGCGCTTTGTTGAAACATCTTTTGTTTTGCTGTGGACTTCATTTCCCAGGTCTTCTAAATAGTGAAGAGAGACGATAATTCATTCCGTGCTCACAAAACAGCCCATGAGATCCCCCACGGGAGCGTGGAGAAGGGGGGTCAGGGTCCTCAGCGCGCGAGGAGGAGAGAATGAATGTCAGTCAATGAGCGAACCTGGCGCTGAGCGGCAGCACTGCACCTCCAACACTTGGTTTCCACCTCTGAGCAAATCTCTGCCTATCGTCTCTACTTTGCCACTGAACGAAGACTCGTTCTCAGCGATACATGCAACTGATACAACTCTCAACACACGACACGACCCGGGAACTGTGTCTCACGCGCGGCGAACGTTCTTTCCTCGAGGTGCGAGTCTACTTTGCTTCTCATGCTTCGCGTTGATCTTCGCTCGCCTGTTTCGAAAAGTTTCGGTTGTGGGGATAAAAGGACAGCTAAACCTTCCAAGGGATTTTTTTAAACAACCGCTTCCTTGCGGAATACTAAGTGAGCAAGTGCGGCCTGAGCGATACGCACGGCACCTTTTACCCTCCTCACTGCAAATATTTAACACCGCTTCCCTGATTGACAAGAGGACGGGAGACTGGATTGCCGTGTTTGTGTCGGTGACGGCAGCCATTTCGAGTGGATGCTTAAGAAGAAGACATAAGTTTACCCTCTAGGGTGATTAAAAAACGTAACGAGTTGGAGTGCTGCTAAGACCCTTCAGACAAAGGCATTTGGGAAGTTTTCAAGAGCAAAGAAGTTAAAATGCGGTAGTGTCATTTCCTGCGACGGCGTTTGAGGGCTCTTCATTTTAGCAGCTGCACACATAACAGCCTTCACACCACATCATGTTTTTTGACAGCCCTGGAAGCATTTCAGTGAAAGTTAAAAAAGCATGAGAAATCGTTGGCATGGCTTAATTTGGAGCAGCAATTAGCATGAAATCCGTTTGTCATCCGCATTCTTGTAACTGTTGCCATTTTTGTCTTGTCACATGGTGTCTAGCTCAGACAGTTAGAGATGTGTGGGTTTGAATGTGTGTGTTTTCTGAGGGTATTGAATGACAGCGTCTGCCCTGTCCTGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_12553125_12559468.mRNA True 1350 mRNA 0.46 2 12552774 12559876

Neighbor

gene id symbol gene type direction distance location
CI01000004_12426409_12429382 TMEM53 coding upstream 123304 12426409 ~ 12429470 (+)
CI01000004_12422242_12423747 OPN4.1 coding upstream 128081 12422080 ~ 12424693 (+)
CI01000004_12418456_12419641 NA coding upstream 131755 12417696 ~ 12421019 (+)
CI01000004_12412259_12417501 NA coding upstream 135257 12412135 ~ 12417517 (+)
CI01000004_12393203_12398519 NA coding upstream 153482 12392504 ~ 12399292 (+)
CI01000004_12562823_12563491 NA coding downstream 1442 12561318 ~ 12563813 (+)
CI01000004_12594138_12621268 NA coding downstream 33287 12593163 ~ 12621791 (+)
CI01000004_12625701_12630744 NA coding downstream 64445 12624321 ~ 12630926 (+)
CI01000004_12646972_12652534 NA coding downstream 86962 12646838 ~ 12652570 (+)
CI01000004_12696326_12707951 NA coding downstream 134501 12694377 ~ 12707996 (+)
G32296 NA non-coding upstream 50893 12501478 ~ 12501881 (+)
G31969 NA non-coding upstream 65331 12486933 ~ 12487443 (+)
G31967 NA non-coding upstream 67868 12484698 ~ 12484906 (+)
G31959 NA non-coding upstream 79369 12473123 ~ 12473405 (+)
G31952 NA non-coding upstream 89400 12462530 ~ 12463374 (+)
G32350 NA non-coding downstream 103703 12663579 ~ 12663812 (+)
G32371 NA non-coding downstream 140739 12700615 ~ 12700910 (+)
G32382 NA non-coding downstream 145088 12704964 ~ 12781485 (+)
G32414 NA non-coding downstream 249741 12809617 ~ 12810075 (+)
G32431 NA non-coding downstream 293086 12852962 ~ 12853804 (+)
G31865 NA other upstream 357627 12192130 ~ 12197418 (+)
CI01000004_11666900_11667179 NA other upstream 885115 11666900 ~ 11667659 (+)
G31710 NA other upstream 910374 11637251 ~ 11642400 (+)
G30797 NA other upstream 2054986 10497376 ~ 10497788 (+)
CI01000004_08976512_08980033 TTPA other upstream 3571790 8976254 ~ 8980984 (+)
CI01000004_14036114_14036449 KIAA0040 other downstream 1463671 14035393 ~ 14039142 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other downstream 2531368 15091200 ~ 15097173 (+)
G34220 NA other downstream 3379481 15939357 ~ 15939950 (+)
G33815 NA other downstream 3503539 16063415 ~ 16066464 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location