CI01000004_12594138_12621268



Basic Information


Item Value
gene id CI01000004_12594138_12621268
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 12593163 ~ 12621791 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>CI01000004_12594138_12621268.mRNA
GGACAAATGGCCATGTAACCCTCTCCCACTTCCATTCAGTCTCTTTTTCTCTATACATTTGCCCACAAATGTGTGTGATTGTGCATCTTTGGCCATTTTTGCACATGTGTTTGTGTATAACAAAGCAAGCTCAGCAGTACTCTGATAACTTTGCTCTATGCTCAAAGGGAAGCTGTGGGTGGAGGCCTGGATATATATATATATTACTACTCTGTGTGACCTATTAATTTTGCTGTCTTTTTCTTTTTAGACTCCTAGGTAAAGGAACAAATAATGATAGAGGTAAAGAAAAAAAAAATAAAAGGAAGGGAAGAAAGGAAGGGAGGTAGGAAGAAAGGAAGAAAAAGGGGAATAAAAGAAATAAGCAAAGAAAGGCTGAAAAACGGATGAAAGGAAAGAAAAAAAGATATGCAGGAAAGAAAATGGCAGGAAGAAGGAAAAATTATGAAAGGAAAAAAGAAGGAAGAAGAAAATATGATTATTAAAAATAAAAGAAAGGATGGAGATTAAATTAATTAAAAGGTACAGAAGGAAGGAAGAAGGAAAAGGAAAGAATTAAGGACAACAAAGAAAAGAAAAAATAAGGAAATAAAGAAATGAAAGAAAAAATTGAAGTATGGAAGGATTAAAAGGGATGATAGAAAGAAAGAAAGAAAGAAAGACAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAAAGAAAGAAAGATTAAAAAATAGAAGTAGCCCAACAGTGGTGAGACAGTATCAGCCTGCTTGGCTGGGCAGACATCATAGTGCCAGAGACCTTATTGCTTTTAAGTGGCCACCAGGCAGAGTCTGCGGCTTGAGCCTGCTACCTTTCAAAGTCACTTAATCCCACTCCAGTGCCTCCGATAGCCCTAATGATCCACACAGGAGACTCTCCACACTGCGCACCTGAATGCTCGCTGCTCTGCAGCCATGCACACTGACTTCACTGTCACTGCGTTAGTGTGTGTGAGTGTGTGTACTGATACACAAAGCTCTCCTTTCCTGATCACTGGCCAAACGGACTCGGGCCCTCAGGAGACCCTCATCTTAGCCAGCTGGCTCAAGCCTCGACTCTCACAAAAACAAAACCACCCTCCTCCTCATTCCATCTGTCCCCCTGAACCCTTAAGACGCAGTGCACTTGTTATTTCAGAAGCGATGGAATTTGCCACGCCGCAGTTGTGTTCCTTCTCATTTTTTACGAGGTCACTTCTCAAGCCATCGACTTTTATATCATCACTTCCTGATAAATATCCTAAGTGCGCCCCCCTTCTCCTGTCCGAAGACTCTGGACCCATGTTCCCAAACTGCCCTTACTTTGTTCTCTTTGTTCAAGAAGTAATTGCATGGCGTGGGGTAAAAGAAATCCAAGGGGGCCATAATGATTTTGAAAAGGAGAGGATAGACATGGGAGGGGTACAAGGAAGAGCCCTGGACGACGAAGCCGTTGTTTATGAAGAGGGATTTATTGGTCTGTGTAGGGCTGTTAGGTGGTGGTGGGCTTCACTGCTCAAGTGGTCTACTAGGGCCGTTCCACAGCCCACCGCAAGGTTGTGTGATGAGATATATTTTCTCAAGCTGCATGTTATTAAAAACCATGTTCATTTAATAATTTTTAATCCTTATTTCGGAGCAAAGCAACAAGGAGCCGTGTGCACCACTAGAGATGTTTCCCACAGATTTGTTGGCCTGAATGGTCCTCAGGGAAGACAGTGGAGTACTGAGGAGCACTTCGCCTCCCCACGCTCCAATGGCTTCCGAGTGATGCCTGTTTATACGGCCCTCTTATTGGTGTCTGTGCTCATCAGTCACAGCGTCTGCCCAATCTGTACCATTTCCTGTGAATTAAAATGCAGTGGGGTTGAGCATGACAGAATATGCATGGCATTACGACCTGCTGTTTATGAGTTTGTCGTTTTTGTGCATCCAGCTGAAGGCGTCTGTGCCGGTAATCCTAGTAAAGCTACCTTGCAGCCTGAGATATTGGCTGAAGAGATTATTGGCATATTGATGGCTTTAGATCAGGCACAGGAGAGGAGCAGTGGCTCTGCCAAGCCAAAGTCAGGCTGTTCTCTGATGGCTCTCATAGAGAGGGTATTTATGACAGAAGCAGCAGCTCAATGGCCTTTTCAAGGTGGACAGCTCTCTCTAAAAGGGTTAAAGCCCAAGGAGCTAGGCGCATACCCCCCTGGGAGTACCCCCCACCCCGCCCCGTCGAGGTGGCATTGTTTCCTTGGACAAACATTCCCACAGAAAGGGGAAAAAGCCATTTGGCTCCCCCAGCTTGTGCTTCTTTCACTGGCTAAGGGGTCTTCCCAGTCAACAGCTGGACATGACGTGACAAATTGGAGCCTTTGTCTTTGTCCTGAGGAGATTGAACCGCTTGACTTCATTGAACATGGTCTGAAAGAACCATTTTCCACAGGTCAGCCGAGCTTCTTAGTAGAGTTGTTCAGACCACAGGCTGGACGAAGGGGGCCAGGTGGCGGTACTGGGGAGCAGAAAAGGGGGTGGCTACCCTGTAGTGTTGTGTGTGAGGTCTGGTTGGGTTGCCAAGGGGACGGCAGGCTGATATATTATCTAGAAGAGTATCAGGCTGACCCAGGGAGAGCGCAGGATCGCAGGAACCTAATTTCCCCCGTTTTTGTCTCTACCTTGTGTGTGTATGTGCACGAAGAGGGTTCGCCCTTGACGGGTGTGCGCCCTCTTCTGAGCTTACCCCCCTGCCTGGCATCTGTTAAGCTGCTAAAGAGAAAGTTGTGTGCTGAGACCGGGAAAAGCGTCACTGGGTATGTGGGGCTGGAGAGCAGACAGATCTGCACCTGCACCGTGAGTATGAGCGGTTTCCGCACCATCGCCTGTAACATCAGGGCGTTTGAAGGACAGGTGTTTATGACAGAGCAGACATTGTTTCTGATTGCTACATATGATTCTATCTTTTGTGTGATCATCGAGGGACCCTCCTTAGGTTGTAGCTCATGTCGTAAGCACTTTGACGGGCAGCTCCATCAGACACCGGCGACCGCCGTGGAGCAGATGTCAGGGATCAGTGTGTGGCCACTCACAGTTCCCACAGTCTGCTCTCCAGATGGAGTCGTCTCTGGTGGTCGAGGTGCCACTCAGGTGATTCCCATTGATTTCCACTACACAGTTGTGTCCTCTCCAGGGCTGCTCGATAGGCCCTCTTCTGTGAGAAAGGTCTTTGTAGCAGGAGATCAGGGCGTAAGAGGATCTGAAGCCCATCGGGGGGTGGAGGAGTGTGGGCAGCAGAGCTTTATGGCATTCAAGACCGACGCTCCTCTTAGTATAATGGAACAGGCTGATTATAGTGAGGAGTGGGACAATAGGGCCAAAGTCCATGAGTGCTGCCTAATAAATGCCTTCAAGTTGGTTATCTGGCAGCGCTTTCTGCTATCTGAGTATGTGCGGAGGTACATCACATCCACTACAAGAATAGAAAAGGAATTGGCTCATTTTGATCTTATTGTCGGTAACTCTACCTCCCTTGTGGCCGAGACAAAAACCAATCTTAATCTGGTTAGAGAGACAACATCAGCTTTTCTAATGCTTTTGAGGGACAAAAAAAATCTGGTGACAGATAATAATGTAAATGGAGGAAAGAAAACATGCTTCAAATGCAACACAAAGGGCCCTAATGAAGTGAAACGTTTGATCTTCCAAATAAAAAACAGACCGGGGATGGGGTACAGCGCTCAAGAAATGCAGCGGTTCATCGTAGGTGTGGAAAGGCATCAGTCCCACCCCCACCTCACCCGCTATGACTCCCAATCGTTTGTGGGGCAACCCCCTCAGCATGTGGCAACCTTTCTGCCAGCTGTGCTTTTCCACTTCAGACGCTGGACGTCTAATTCCCACCTCACTTAAGAGAGACGACGGGCATGATGTAACTCCCATTGAATTTCAATTGCTACAGTACGTTCGCTCCACAAAAAACAAAACAAAGCACACGCAATGCATTGCCCACTTACAGGCACCCATTTCTGATAAGTTCCCCCTCCCTTGATCCCAGTGTTCAGGCTTTGCCAGGCAGGGGCTTATAAAAGCAGACTTCAATGAATGAAGCCCACCGCGGGGTGCCTTTCTCACCACGCCCGCATATCTGGTTTGATTTTGGAGAAATGACTGAATTCCTGCCGTTGGAAAGCACAGTGGAACATGCTCAAGCTCTATTAAAAGCTGGGTGGGGTGGAGTTGGGGTTTAGAGATGGATGGGTAGCAATGTGTTTAGCAAGGCTTGTCTGGGACAGTGTACAACAGTACAACAGGAATTCCCTATGATCCAATGATGGAGGACACAAATAACACAGACTCAGAATACTGTGGGTAAACAGGCGTGTCATCTCTTTGACCTTCCTGTCTCTGACCGCCACCGTTTGTCTCAGAGCGA

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
CI01000004_12594138_12621268.mRNA True 4453 mRNA 0.47 21 12593163 12621791
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Neighbor


gene id symbol gene type direction distance location
CI01000004_12562823_12563491 NA coding upstream 29350 12561318 ~ 12563813 (+)
CI01000004_12553125_12559468 NA coding upstream 33287 12552774 ~ 12559876 (+)
CI01000004_12426409_12429382 TMEM53 coding upstream 163693 12426409 ~ 12429470 (+)
CI01000004_12422242_12423747 OPN4.1 coding upstream 168470 12422080 ~ 12424693 (+)
CI01000004_12418456_12419641 NA coding upstream 172144 12417696 ~ 12421019 (+)
CI01000004_12625701_12630744 NA coding downstream 2530 12624321 ~ 12630926 (+)
CI01000004_12646972_12652534 NA coding downstream 25047 12646838 ~ 12652570 (+)
CI01000004_12696326_12707951 NA coding downstream 72586 12694377 ~ 12707996 (+)
CI01000004_12719753_12721562 KLF17 coding downstream 96625 12718416 ~ 12722033 (+)
CI01000004_12764916_12775989 SLC6A9 coding downstream 143125 12764916 ~ 12776172 (+)
G32296 NA non-coding upstream 91282 12501478 ~ 12501881 (+)
G31969 NA non-coding upstream 105720 12486933 ~ 12487443 (+)
G31967 NA non-coding upstream 108257 12484698 ~ 12484906 (+)
G31959 NA non-coding upstream 119758 12473123 ~ 12473405 (+)
G31952 NA non-coding upstream 129789 12462530 ~ 12463374 (+)
G32350 NA non-coding downstream 41788 12663579 ~ 12663812 (+)
G32371 NA non-coding downstream 78824 12700615 ~ 12700910 (+)
G32382 NA non-coding downstream 83173 12704964 ~ 12781485 (+)
G32414 NA non-coding downstream 187826 12809617 ~ 12810075 (+)
G32431 NA non-coding downstream 231171 12852962 ~ 12853804 (+)
G31865 NA other upstream 398016 12192130 ~ 12197418 (+)
CI01000004_11666900_11667179 NA other upstream 925504 11666900 ~ 11667659 (+)
G31710 NA other upstream 950763 11637251 ~ 11642400 (+)
G30797 NA other upstream 2095375 10497376 ~ 10497788 (+)
CI01000004_08976512_08980033 TTPA other upstream 3612179 8976254 ~ 8980984 (+)
CI01000004_14036114_14036449 KIAA0040 other downstream 1401756 14035393 ~ 14039142 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other downstream 2469453 15091200 ~ 15097173 (+)
G34220 NA other downstream 3317566 15939357 ~ 15939950 (+)
G33815 NA other downstream 3441624 16063415 ~ 16066464 (+)

Expression


CI01000004_12594138_12621268 Expression in PRJCA010000

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CI01000004_12594138_12621268 Expression in each Bioproject

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CI01000004_12594138_12621268 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 20.
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Co-expression Network