CI01000004_12696326_12707951



Basic Information


Item Value
gene id CI01000004_12696326_12707951
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 12694377 ~ 12707996 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>CI01000004_12696326_12707951.mRNA
CTTTAAAAGCATAGGACTGGAAGTACCGGGTGGAGGCCTTTCTATCTGGAGCAGCTCCACCTGTGGGAATGAAACACTAGCTGGGTTTCCATCCAAACGTGAAGCGAATCTTTTCAAAGTTCACAAAAAAACAAACAAATGCGAATTAGTTGCATTTCCAAGTTGTTCGAGCAGATGACTAGTAACCAGCAGTATATAAAACACCATCAGCGGAAACAACCGATTAGTCACGTGGATTTAATGTTCGCTATTTATTCAGCAAATGCATTTCCCATTATTCGCATTAACTCTTTTTCGCACAAGTCAAAAACCACCTCAAACGAGCATAACAACTTTTTTGCGAATTAAATTTCCATTTTCCATCACTTATTTCTGATGCGATACTTCAAAATGCGCTTAAAAACTGGGTGATGGAAACATAGCTTATGTCTTTATATCATACCTGCAAACTAGTCGCTTTTCGGCGAAATTCACTGTTTTGAATCAAAATATGTCATTTATGTGAATCGTGTAGATCCGAAGAGTTTTTTTATTCGGGGGTGGAGGGTGTCAGGGTGAGTTTGCAGGCACAATAATTCAAAAATGGGCTACTTTCCCATAGACTGGAGTGAGACCATAAACGTCTCTCGAGCTGTCGCGATCTTTTTTGGCGCTCTGTGGTGTGACTGACACATCGCTGTAGCGCTTCAGTTCAAACAGAGGCAGAGCGCACGTGAACCAATCATCTCTTCTGCTTTACAACACGAAATAAACATGAATGAATGTAGGATGAATGAATACCAAAGGTATGTGGAAAGATCCAGTACAACTTACTGAAATCCGTATCATGTCATATGTAACGTTAATCGATCAATCATTGTTTCAACCACAGAAAAGCGCCAATAAAATAGCTTGTAAAAATGTCACATTTACTGTAACATTTACCTCAGAAAAGCTGTTCAATGTCAAAAAACTTGTTAGTCAGCTACAAAAATGAACTTGGAGAGGAGCATTTTGATATATATCCACTGTGACTATAGGCCATTGCATATTCATGTATTTAACATGTGCTTCAATACTGAATGTATAAAACCGTTTTATGACGGCCACCATATAAATGTTTAGGCCAATATTAAAAACGAGTAGAAACATAATTATGTCATTAAAAATGTATTAACACGTCATTATAAAAACTTCTTTATGTGTAATTTATATGTAAGTACAAATCAATTAATTTTAACCTTTAATATTATAATGATGTACCAGCTGTGGTTCCCTGTATAGTTTACAGCATTAGTTGAGAGATGTTTTTTCTTTGAGGAAATTTGCCATGTACTGTACCTGATAGGCCCCAAATTAATCAATATTGAATTGAAGGTAATCAAATTGAAATCAAATCGCAAGCTTCTGAATCAAAATCGAATCCAATTGTGAAATTTATGTCAATGCCCAGCCCTAGTATCAATAAATGTTTTTTTTTTTTTTTTACTTGAAGCAAATGTTGTTGTTTTTCATTTATTTTCTTGTGGGAGTGCACCAGAATGCTTAGTTTATATGTTAAAATCACGAAAATTTTCTCCAAGGGGAGGATGCCCCCAGACCCCCCTACTACTATTTACTATAAACATGTAAACATATATAATATTTTAAGTATCTTATGCTCATCAAGGCTGCATTTATTTCAATACTTTTTATTTATTCCTGAGAATAATGATTGGAATAACTTTTGATTGGAAGTGTATAACACAATTTATTTATTTTTTAAAAATCAAATTGCACAAATCTTGTAATATACCTTTCTTCCTAGCAGTGATTTTTTCTTTAGCTAAACCTATAGAGCTGTTTGTGTCTGTTTTGACACTTGGGCTGTGTAACTGGGATAGCGTTTCCTGCTGAGGCCTCTTTAGCCAGAAGCAGGGCAGCCCAAAGGCTAGGGCAGGCCTGCGATTGTAGCCCCCCACTGGGCCTGAATGAGGGTCCTGCCTCCCATCAATTTACCCCTGGGACCAGCCCCATGGAACACAAGACTTTACAGCTCCAATCCAATCGAATCCCCAGGCAATAGAGGGCAGAGTGAAAGAGAGCCAGCAGGTAGTAATAGTCACTTAAAACAGCAACAACATTCCTCTGTGGGCAACCTCGCCCTGCCTGGTGGAATCGTGGAGAATCCCACCAGACGCATATTAAGAGGCCTGTACAAACCAGTGGTTTCACTTCTGCCCTCTCGAAAGGCCTCCGGATCTTACTCACCTGGACATCACACCATCCTGAACCTGTTAGTAAACCGTGCAGGTTCATTCATTGGTCAAGCTATGCTGATGTTCTATATAATGAGTGCATTTATAAATGGCTCCTATTGTGTGATGACTAATAGTCCAGGTAGTGGCATCCAGCTGAGTTCTAACAGTTCCTCTGCACTCTTCCCCAGGCTTAGGGGGCCAGCGCTGACTGACAGAGGCCCTGCCGTGAGAGGCGGAGAGCTCCTCATGAGCCTCAGCATGCAGCCCCTTTCCCAGGCCCGCCTTGAGGCCTCCGGCCGCTCTGCAGGAGAGCCCCGCTCCGCTCTCAGACCTCATCCACAGACCTGTGGGGCAGGGTTAGACATGGGCTGGGTCCTCTCAGCTCCACAGGGGGTTGTGGTCTGGGCTAGCCTGGGCACACCATACTCAGCTCTGAAGAAATGTCAACTGGGAATAGTTTGTTTGATCTCGGAGGTCCCTGGAGATCACAGCTTGAGAGGCGATGACATTGGCACAAGGGAAAAAAATGGGGAGCGAGAAAGAAAGACAGAGAAAGAGTTTGAAGAGGCTTCAGTTACAGTGAACACAATATGTCAAAGATGGAGATGGGGGGGATGGGTGATTCCTTCCGTATTTTTAGAAAATTGTCACTCTGAGAAAGACAGAGGCGCCATTTCGAGGACTTGTGGAAAAAGGCGATGTGCAGTGAGCTGGGTCCGGTCGAGTTGTGTGGTCCGTGATGGGAACTGGTATGCTGTTGCTGCTGGACACTGGGGACCTGAAATACCAATTCAGGCATGGCTCCTATACTCCAGTGTCTGTACAAAGGAGACAGCGGCCTACAATTTCTCATGGATCAAATAGAAAACCATTAGATCTACATAAGAATATAGTAAAATGTCTACCAGA

Function


NR:

description
hypothetical protein cypCar_00029340

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
CI01000004_12696326_12707951.mRNA True 3128 mRNA 0.42 8 12694377 12707996
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Neighbor


gene id symbol gene type direction distance location
CI01000004_12646972_12652534 NA coding upstream 41807 12646838 ~ 12652570 (+)
CI01000004_12625701_12630744 NA coding upstream 63451 12624321 ~ 12630926 (+)
CI01000004_12594138_12621268 NA coding upstream 72586 12593163 ~ 12621791 (+)
CI01000004_12562823_12563491 NA coding upstream 130564 12561318 ~ 12563813 (+)
CI01000004_12553125_12559468 NA coding upstream 134501 12552774 ~ 12559876 (+)
CI01000004_12719753_12721562 KLF17 coding downstream 10420 12718416 ~ 12722033 (+)
CI01000004_12764916_12775989 SLC6A9 coding downstream 56920 12764916 ~ 12776172 (+)
CI01000004_12810922_12817913 VWC2L.2 coding downstream 102576 12810572 ~ 12818547 (+)
CI01000004_12984968_12997831 KISS1R, KISS1RA, GPR54 coding downstream 276972 12984968 ~ 12998063 (+)
CI01000004_13043279_13051835 NA coding downstream 335241 13043237 ~ 13051964 (+)
G32350 NA non-coding upstream 30565 12663579 ~ 12663812 (+)
G32296 NA non-coding upstream 192496 12501478 ~ 12501881 (+)
G31969 NA non-coding upstream 206934 12486933 ~ 12487443 (+)
G31967 NA non-coding upstream 209471 12484698 ~ 12484906 (+)
G31959 NA non-coding upstream 220972 12473123 ~ 12473405 (+)
G32414 NA non-coding downstream 101621 12809617 ~ 12810075 (+)
G32431 NA non-coding downstream 144966 12852962 ~ 12853804 (+)
G32439 NA non-coding downstream 194541 12902537 ~ 12952107 (+)
G32491 NA non-coding downstream 269974 12977970 ~ 12978178 (+)
G32494 NA non-coding downstream 274433 12982429 ~ 12982669 (+)
G31865 NA other upstream 499230 12192130 ~ 12197418 (+)
CI01000004_11666900_11667179 NA other upstream 1026718 11666900 ~ 11667659 (+)
G31710 NA other upstream 1051977 11637251 ~ 11642400 (+)
G30797 NA other upstream 2196589 10497376 ~ 10497788 (+)
CI01000004_14036114_14036449 KIAA0040 other downstream 1315551 14035393 ~ 14039142 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other downstream 2383248 15091200 ~ 15097173 (+)
G34220 NA other downstream 3231361 15939357 ~ 15939950 (+)
G33815 NA other downstream 3355419 16063415 ~ 16066464 (+)
G34400 NA other downstream 4269332 16971995 ~ 17025976 (+)

Expression


CI01000004_12696326_12707951 Expression in PRJCA010000

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CI01000004_12696326_12707951 Expression in each Bioproject

Bar chart with 43 bars.
CI01000004_12696326_12707951 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016537 NA non-coding NC_007113.7 CM002886.2 33271841 ~ 33281735 (-)