CI01000004_12719753_12721562 (KLF17)


Basic Information

Item Value
gene id CI01000004_12719753_12721562
gene name KLF17
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 12718416 ~ 12722033 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_12719753_12721562.mRNA
CTATATAAACCGACAGAATCAGATTGTGCAAATGCTGCTGGTTTGCGCACACAGAACAGAAGAAACAGCACGCGCAAAACGTTTCGCCGTGCAAATACTCAGCATATAATAGGCCTATTTGATGCAATTTTGAAATAAAATGTCTAGTATTTTTTATTCTACCTACACTTTAACTGCGTCGGAGATAATTAATAGCCTAGCCTAGCCTACCACGTATCGAAGGCATCTGGTGGAATAGAGTATTTTGGTTAAACCTGCCCCTTGTCTCTAAACATAAGCCCGAGAGCATTAGGCCATTCATTTACATTTTAATCAACTGAAAGCGGAGGTCTATTGACTCAGAGATCATTAACTAACATGTACCTGCATTGTTGAACATTGAGATTATCATGTTGTTTCGATGGCTCCGAGATTTTACAGCTACTTTTTCAAATGCTAATTAAGCAGGAGTTCGATCTGGGTAAATTAATACTTATATCAGACACATGAGATCAGCCCAATTTTAATACGAATGAAGAGGTGAAACTCACAGTAATGTGGCTGGTTGATTGAAACATTTGGCTCCTTATTATATAACATATGTTTGTTTTAATAGTAATTAATTTAGCCTATGATTTCCTTATGAAACATTTTGTTTTGTTTGCAATATGATATCAAGCATTGTATCTTTAATATAAACCCTAAAAATAATAATAAATAATTTATATTGAATATTTTCAACACTTTTTAATAGATTTTGTTAAATATTTTACCAAAATAATACTGTTTGACTGGCCCTCCAATAAAATACAAGAAGTTTCAGGGGGTTTGTGGCGCCCCCTTCAGCACTCAGATTACACTCAGAATTCTGGGGGGAAAAAAACATCAAATGAATAACAAATTCAATATTCCGCTTACATTCTTAAAGAAAATTATTTGGACGTGAAAGTTTTGAATCAAAACAATCGTATGCAATGAAACTAATTATTATGACATATGGAGTAATGTGAGATATTTACAATTAAACTGCAAAAGCAGCACATTTTAGAGGAAGTAGTCTTCCTAATTTATTGGAATAAGGAGATTAATTTTATGTTTTATTAATTAGACGTGTAATTATAGGCCAAATAATCAATTGTGCTTTGGCAATATTTACATGTTGTTAAGGATAGCCAGAGTAAATAGCCTACTTGATAGGCTACAACTACATGACTAACGTCATGAGATCACGCCCACACGACGCTCAGACCCTCCTTATAATGGGACAGGTAGGTAGCCAGTCAAACGTATTAGAGACGCATTGTCTGTGTCGGACTGAATGAGACTGAACAGCTACTGAGTTCCCTAACATTTGCAACATGGCTCTTGCAGATGCGATGTTGCCTTCGATAAATACTTTTTCGAGCAACCAGATTTTAGACGAAAAGCAGTCTGAAATTGTTCGGGACTGGAAAGTTGACCCAACTAAGACGAGCTCGACGGTTGGAGAATTGAGACCCCTCATCGAAGTGGAGTTCAGCATTGTCGAATCTCCACCTTTGGCCAAAGACGAGGACGAACTTTCCAAGTTTTTGGATCTAGAGTTCATTCTGTCCAACTCTGTCACGTCTGACATTGACAACTCAGCGCAACCGCCGCCCGCATATTCTCTACCGGAGTCGCCAGAAAGCTGCAGTACTGTGTACGACAGCGATGGATGCCACCCGACGCCGAACGCTTATTGTGGCAACAACTTCACCACACGTCCCGGCCACAGTCTGGTAGCCGAGTTGTTTACCTCGGACATGAATTATCATGGCGACTCGCATGATTTTAGTTTAAAAGGACATTTAGACAGACTGGAGTACACTGAACTAAGGGCTCTAAACTCTAGAAACCAGGCACACGTGCCCAATTCCAATAACGTGGGATACAAAATAAAATCTGAAAACCACGAGCAATCCTGCATGATGGTGAACGACTACGTGGGTCATTATTATGGACAAGAACCCCAGCGCGCGATGCCTTATGGGCATCACGTGCAACAAGATGTGCCTCGGGACATTTTAGGGAGGAAAGACTGCATCCTAACAGAGATGAACTCTCACCATCACATTGACATTGCACATCAACAGCAGTTCATGAATAGCGCGCCTTTTCCTCCTCAGTACGCCCAGCATCAACAGTATCACGGACATTACAACATGTTTAGCGAACCATTGCGGGCAAATCACCCGGCCATGCCAGGTGTGATGTTGACTCCACCATCCTCACCGCTCCTGGGATTTTTAAACCCAGAAGACAGCAAGCCAAAGCGAGGGCGTCGATCATGGGCACGAAAACGGACTGCGACGCACAGCTGTGAATTCCCCGGATGTGGGAAAACGTACACGAAAAGCTCCCATTTGAAAGCGCACATGCGGACACACACAGGTGAGAAACCCTACCACTGCAGTTGGGAAGGCTGTGGCTGGAAGTTCGCCAGGTCAGACGAGTTGACGCGTCACTACAGGAAACACACCGGACACAGGCCGTTTCAGTGCCACCTGTGCGAGAGAGCTTTCTCCCGCTCAGATCACCTGGCCCTGCACATGAAGAGGCACATGTAAAAAAGAGACTATATCTATTTTAAACCACAAGAGAATTTTATATTGTTGAGACAATTCCTATTTTGGGACAGCAGTTATGTGAATAGCAGTATAATGTCATTTGCTTTAAATTATGACAGTATTTAATAGAAGGAGATTCTTGTTCATTTAGAAGGTAAATTATGTAGTACTTTCCAAGATGTATAAAAACGGGGCAGGACCCATACTTTTGTATAGGTTATATGTTTTTTAATCTCCATTTAAACATTTGTATTAAGTCAGGGAGTATTTTTTTTTTTTTTTCATGGATTTTCAGAATTAAAAGCATTGTCTTTTTTGTACTCAGCTTTTTGTCTCATTTTCTTAAGCTTCTTATTTCAAATTTGTCGAGTTACCATGCGGAAGGGTATTAAAACCAGAAACTGGATCCACACAAAGAGCATAGCACAAATAATTTTTCCTCCATAGAAATACTGGGTGAAGACAAACAAA

Function

symbol description
klf17 Enables DNA binding activity. Acts upstream of or within several processes, including erythrocyte differentiation; hatching gland development; and regulation of gene expression. Predicted to be located in nucleus. Is expressed in several structures, including ectoderm; germ ring; hematopoietic system; lateral line system; and mesoderm. Orthologous to several human genes including KLF2 (Kruppel like factor 2).

GO:

id name namespace
GO:0030218 erythrocyte differentiation biological_process

KEGG:

id description
K17846 KLF4; krueppel-like factor 4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_12719753_12721562.mRNA True 3038 mRNA 0.40 3 12718416 12722033

Neighbor

gene id symbol gene type direction distance location
CI01000004_12696326_12707951 NA coding upstream 10420 12694377 ~ 12707996 (+)
CI01000004_12646972_12652534 NA coding upstream 65846 12646838 ~ 12652570 (+)
CI01000004_12625701_12630744 NA coding upstream 87490 12624321 ~ 12630926 (+)
CI01000004_12594138_12621268 NA coding upstream 96625 12593163 ~ 12621791 (+)
CI01000004_12562823_12563491 NA coding upstream 154603 12561318 ~ 12563813 (+)
CI01000004_12764916_12775989 SLC6A9 coding downstream 42883 12764916 ~ 12776172 (+)
CI01000004_12810922_12817913 VWC2L.2 coding downstream 88539 12810572 ~ 12818547 (+)
CI01000004_12984968_12997831 KISS1R, KISS1RA, GPR54 coding downstream 262935 12984968 ~ 12998063 (+)
CI01000004_13043279_13051835 NA coding downstream 321204 13043237 ~ 13051964 (+)
CI01000004_13062721_13076100 KIF2C coding downstream 340688 13062721 ~ 13076228 (+)
G32371 NA non-coding upstream 17506 12700615 ~ 12700910 (+)
G32350 NA non-coding upstream 54604 12663579 ~ 12663812 (+)
G32296 NA non-coding upstream 216535 12501478 ~ 12501881 (+)
G31969 NA non-coding upstream 230973 12486933 ~ 12487443 (+)
G31967 NA non-coding upstream 233510 12484698 ~ 12484906 (+)
G32414 NA non-coding downstream 87584 12809617 ~ 12810075 (+)
G32431 NA non-coding downstream 130929 12852962 ~ 12853804 (+)
G32439 NA non-coding downstream 180504 12902537 ~ 12952107 (+)
G32491 NA non-coding downstream 255937 12977970 ~ 12978178 (+)
G32494 NA non-coding downstream 260396 12982429 ~ 12982669 (+)
G31865 NA other upstream 523269 12192130 ~ 12197418 (+)
CI01000004_11666900_11667179 NA other upstream 1050757 11666900 ~ 11667659 (+)
G31710 NA other upstream 1076016 11637251 ~ 11642400 (+)
G30797 NA other upstream 2220628 10497376 ~ 10497788 (+)
CI01000004_14036114_14036449 KIAA0040 other downstream 1301514 14035393 ~ 14039142 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other downstream 2369211 15091200 ~ 15097173 (+)
G34220 NA other downstream 3217324 15939357 ~ 15939950 (+)
G33815 NA other downstream 3341382 16063415 ~ 16066464 (+)
G34400 NA other downstream 4255295 16971995 ~ 17025976 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015587 klf17 coding NC_007113.7 CM002886.2 33326522 ~ 33328688 (+)