tal2 (tal2,LOC107594599,LOC107725114,LOC107723303,LOC107667406)


Basic Information

Item Value
gene id tal2
gene name tal2,LOC107594599,LOC107725114,LOC107723303,LOC107667406
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 450168 ~ 451365 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU47246
CTCACATCCTCGCTCTCTTTCACCCTGTTTTCCATCCGAGGAGTTTGTTCGAGGGTTCAGAGCGTGTCAGAGAGCTGAGAGTGAGAGGACGGACTGCAGTTACCTGACAGCTCTTTATCTTTCCTAAACACACACGTTGCTGCTTTTACCTGCCATCTGGactatttttctcattttctaaatTTGCGCCTGATGCTCCAACGTTCGTAGAGCTTCAAGTCGACGGAAAGTGAAGTACCGCAGTATCATGACCAGGAAGGTGTTCACCAACACACGCGAGCGCTGGCGCCAACACAACGTCAACACAGCCTTCGCAGAGCTGCGGAAACTCATCCCCACGCATCCTCCCGAAAAAAAGCTCAGCAAGAACGAGATCCTGCGGCTGGCCATGCGCTACATCAACTTCTTGGTGACTCTGCTGGAGAGCCAGGGAGGAGAGCCGTCGGCTCACTCGCAAGCCGCGCTCCTCACACTGATCACGGGTAACATGCAGAACCTACGCACCGACCGCACCTGGACCAGCGACACCGACCCGCCCTCACCCGGCTCCAGCTGTGACAGTTCCGAAGCCTGGTAGAACCAAACCCGTGTGTCAGAGTTCTATGAAAGGATTCTGTGATTGTGATGTTTTCGAAAGTTCCGTCGCCGTGGAGAGACAAAGCTGGATTTTTGGAACTCGGAATGTTCGCGATGACATCACAATCGCTCATTGCTTCCACGCAGTTTGGAAACAAATGATGTGTGGAAACCCAGAAACTCTATTCACCAGTTCTGCTGTAATTGAGCAGGAACCCTAAACAACATATGCATGATCAAGGATGCACTTTGGAAGAATCTCCCTGGTACTTTTTAGtattaatgtcatttaatttccTTGACTGAATTAACACTCGAGAATGTTTTGCTTGAGACTGAAGTCAGAAatgaaactgtaatttatttgattgtattttatttattatttatgctttcAGTGGATTCAGCACATGTGACTAGTTGtacattaaattgtaatttattaaatggaaaatgttattgtttattctgcgttcacaaatacaaaatatgtttttgccaaa
>XM_043238314.1
GCACAAGCCAAACCCCACCCCTCCCTCACATCCTCGCTCTCTTTCACCCTGTTTTCCATCCGAGGAGTTTGTTCGAGGGTTCAGAGCGTGTCAGAGAGCTGAGAGTGAGAGGACGGACTGCAGTTACCTGACAGCTCTTTATCTTTCCTAAACACACACGTTGCTGCTTTTACCTGCCATCTGGactatttttctcattttctaaatTTGCGCCTGATGCTCCAACGTTCGTAGAGCTTCAAGTCGACGGAAAGTGAAGTACCGCAGTATCATGACCAGGAAGGTGTTCACCAACACACGCGAGCGCTGGCGCCAACACAACGTCAACACAGCCTTCGCAGAGCTGCGGAAACTCATCCCCACGCATCCTCCCGAAAAAAAGCTCAGCAAGAACGAGATCCTGCGGCTGGCCATGCGCTACATCAACTTCTTGGTGACTCTGCTGGAGAGCCAGGGAGGAGAGCCGTCGGCTCACTCGCAAGCCGCGCTCCTCACACTGATCACGGGTAACATGCAGAACCTACGCACCGACCGCACCTGGACCAGCGACACCGACCCGCCCTCACCCGGCTCCAGCTGTGACAGTTCCGAAGCCTGGTAGAACCAAACCCGTGTGTCAGAGTTCTATGAAAGGATTCTGTGATTGTGATGTTTTCGAAAGTTCCGTCGCCGTGGAGAGACAAAGCTGGATTTTTGGAACTCGGAATGTTCGCGATGACATCACAATCGCTCATTGCTTCCACGCAGTTTGGAAACAAATGATGTGTGGAAACCCAGAAACTCTATTCACCAGTTCTGCTGTAATTGAGCAGGAACCCTAAACAACATATGCATGATCAAGGATGCACTTTGGAAGAATCTCCCTGGTACTTTTTAGtattaatgtcatttaatttccTTGACTGAATTAACACTCGAGAATGTTTTGCTTGAGACTGAAGTCAGAAatgaaactgtaatttatttgattgtattttatttattatttatgctttcAGTGGATTCAGCACATGTGACTAGTTGtacattaaattgtaatttattaaatggaaaatgttattgtttattctgcgttcacaaatacaaaatatgtttttgccaaa

Function

symbol description
tal2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within brain development and ventral spinal cord interneuron differentiation. Is expressed in floor plate; neurons; and spinal cord. Human ortholog(s) of this gene implicated in acute lymphoblastic leukemia and adult T-cell leukemia. Orthologous to human TAL2 (TAL bHLH transcription factor 2).

NR:

description
T-cell acute lymphocytic leukemia protein 2

GO:

id name namespace
GO:0007420 brain development biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09068 TAL; T-cell acute lymphocytic leukemia protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU47246 False 1079 TUCP 0.46 2 450192 451365
XM_043238314.1 True 1103 mRNA 0.47 2 450168 451365

Neighbor

gene id symbol gene type direction distance location
si:ch211-12e13.12 LOC107653106,LOC107725106,LOC107594598,LOC107572264,LOC107723305,LOC107667694 coding upstream 32966 414822 ~ 417202 (+)
si:ch211-12e13.1 LOC107725096,LOC107594596,LOC107705059 coding upstream 35294 411450 ~ 414874 (+)
si:ch211-155m12.1 NA coding upstream 74649 373796 ~ 375519 (+)
tnksb tnksb,LOC107750292 coding upstream 77066 353034 ~ 373102 (+)
agpat9l agpat9l,LOC107725122,LOC107704894,LOC107567651,LOC107594581,LOC105902903,LOC108411269,LOC108255643 coding upstream 100350 341495 ~ 349818 (+)
LOC122345394 ugt2b3,ugt2b1,ugt2b5,LOC107667397,LOC107572263,LOC107723313,LOC107725113,LOC107725071 coding downstream 2717 454082 ~ 462279 (+)
LOC122345389 ugt2b3,zgc:172315,ugt2b1,ugt2b6,LOC107723313,LOC107725113,LOC107572263,LOC107667397 coding downstream 12716 464081 ~ 483423 (+)
LOC122345390 ugt2b3,ugt2b1,ugt2b5,LOC107667397,LOC107572263,LOC107723313,LOC107725113,LOC107704326 coding downstream 12789 464154 ~ 468427 (+)
LOC122345391 LOC107572263,LOC107667397,LOC107723313,LOC107725113,LOC107667542,LOC107725071 coding downstream 17596 468961 ~ 472971 (+)
LOC122345393 NA coding downstream 21628 472993 ~ 473935 (+)
LOC122346098 NA non-coding upstream 47788 398821 ~ 402380 (+)
G32003 NA non-coding upstream 52382 396160 ~ 397786 (+)
G32002 NA non-coding upstream 54382 390872 ~ 395786 (+)
G31998 NA non-coding upstream 65949 383514 ~ 384219 (+)
G31983 NA non-coding upstream 150794 298474 ~ 299374 (+)
G32024 NA non-coding downstream 22966 474331 ~ 474857 (+)
G32026 NA non-coding downstream 34638 486003 ~ 486240 (+)
G32032 NA non-coding downstream 46326 497691 ~ 498900 (+)
G32042 ddr2l,LOC107725118,LOC107550294,LOC107723312,LOC107594585,LOC107704361,LOC107667359 non-coding downstream 105360 556725 ~ 560608 (+)
G32067 LOC107751416,LOC107579531,LOC107653145,LOC107550279,LOC107667655,LOC107723311 non-coding downstream 165835 617200 ~ 621039 (+)
LOC122346012 cunh9orf84,LOC107704297 other upstream 2682 432779 ~ 447486 (+)
susd1 susd1,LOC107594557,LOC107704917,LOC107572260,LOC107667560 other upstream 18703 419242 ~ 431465 (+)
G32004 LOC107725159,LOC107594583,LOC107704910,LOC107667568 other upstream 42507 402573 ~ 407661 (+)
rchy1 LOC107725104,LOC107723308 other upstream 55704 389910 ~ 394464 (+)
idua idua,LOC107572256,LOC107750302,LOC107723292 other upstream 66709 367792 ~ 383459 (+)
G32277 NA other downstream 603828 1055193 ~ 1057153 (+)
selenoe fep15,LOC107667262,LOC107566481,LOC107750764,LOC108443918,LOC101066385,LOC105931211,LOC100703742 other downstream 660899 1112264 ~ 1115405 (+)
ccl19a.2 ccl19a.2,LOC107704660,LOC107755825,LOC107599642,LOC107668736,LOC107599131,LOC107741495 other downstream 1340463 1791828 ~ 1793266 (+)
G32611 prrc2b,LOC107704672 other downstream 1371289 1822654 ~ 1826114 (+)
G32620 prrc2b,LOC107704672,LOC107562325 other downstream 1383783 1835148 ~ 1843013 (+)

Expression


Co-expression Network