LOC122344906 (LOC107676118)


Basic Information

Item Value
gene id LOC122344906
gene name LOC107676118
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 820190 ~ 822829 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU47578
gaaaacTGAAGCCAGTTGATGAGGCCATACAGTTCTCACTACTACAGAAAGACAAATCTGGTCTTGAAGGAGGATTCATCAATGATTTTAAAGGcaaAGGTGTGTTTGAGAAAGGAGATTTCCTGCTGGAATATAGAGGGGACCTCATAGATAAAGAAGAATGTGAACGGAGGCAAAGGATATATCATGATGCACTTAAAGTTTATATCTTTGAGTTTCGCTATAATGGAAAGCTTCTCTGCATTGACGCAGCCCGGGATGATGGTAAACGATGACCATATGAACCCAAACAGCAGGATGAGAACCATCTCTGCGGATGGAAAACCTCACTCAAAGAGCATCTGTCCTGGTGAAGAGATAACTGCTTCTGACTGGCCATGGCGATGCACGAAAATGAAAGCGAGCCAGAAACTGAAAAACCACGAAGAGGGCAAAAAGTGGCATGGTCACATGATGAAATTACAGCTGTAATGAAACCTTTTAAGTCCCATGTAAATAAAGGTAAACTGGCCACATGAACTGAATGCCAGCAGTGTAAGTTTTGGCAAGGCGTAGTGCTCAGAACATACGGGATTTTGTTAGAAATCGAGGAATTAGcctaaaaaggaaaatgcaaaGTAAGTAACCTAACAGTACATCCTGTGTCTCTTTTGATGCCGTTCTATTGTAATTAGCACATTGGTGGTTGGTGcctaaggtttttgtttatttgttgaagtTATTAAAGTTCTTCTAAAACGCATTGGTCCCTCTAATGTTGTGTATTGTGTTTAAGATCCGGTACTCTTTAACC
>XR_006250945.1
gGAGAGGTGTGTTTGAGAAAGGAGATTTCCTGCTGGAATATAGAGGGGACCTCATAGATAAAGAAGAATGTGAACGGAGGCAAAGGATATATCATGATGCACTTAAAGTTTATATCTTTGAGTTTCGCTATAATGGAAAGCTTCTCTGCATTGACGCAGCCCGGGATGATGGTAAACGATGACCATATGAACCCAAACAGCAGGATGAGAACCATCTCTGCGGATGGAAAACCTCACTCAAAGAGCATCTGTCCTGGTGAAGAGATAACTGCTTCTGACTGGCCATGGCGATGCACGAAAATGAAAGCGAGCCAGAAACTGAAAAACCACGAAGAGGGCAAAAAGTGGCATGGTCACATGATGAAATTACAGCTGTAATGAAACCTTTTAAGTCCCATGTAAATAAAGGTAAACTGGCCACATGAACTGAATGCCAGCAGTGTAAGTTTTGGCAAGGCGTAGTGCTCAGAACATACGGGATTTTGTTAGAAATCGAGGAATTAGcctaaaaaggaaaatgcaaaGTAAGTAACCTAACAGTACATCCTGTGTCTCTTTTGATGCCGTTCTATTGTAATTAGCACATTGGTGGTTGGTGcctaaggtttttgtttatttgttgaagtTATTAAAGTTCTTCTAAAACGCATTGGTCCCTCTAATGTTGTGTATTGTGTTTAAGATCCGGTACTCTTTAACCACCTCAGTCCTGGTAATGCAGCATAgtgacccgtgtgtgtgttgtgtaaggTCATGTACCAGTAAAACACCCTGGTCCCTGTAATCCAGAGAACTGACATGTTTGGTGTATTGTAAAGTGAGTGTCCTCATAAATCAGTCAGACCCtgtaaatcataattatgaaatgGGCGGGAACATTTTAGGGGGGGCGTGGCAGTCCTTGTGTACCACCAAAATATCAGATTGTCATATTATCCATTTTATTGGTTGTAAAGAAAATCCAAAGTGatatttgtgttctgcagagtaaaacaaaatttttgatagttttatcaTCTCTGTAGGACATTGGGAAAGAGGTGTCCCCTTAAACCACCATCCAACTGGTTTGGCCTTCAATGTCTtgctaaaccacaaaaaccagtatgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU47578 False 793 lncRNA 0.41 4 820615 822829
XR_006250945.1 True 1125 lncRNA 0.41 3 820190 822464

Neighbor

gene id symbol gene type direction distance location
chek2 chek2,LOC107653214,LOC107667648,LOC107567453,LOC107550275 coding downstream 161997 650073 ~ 658193 (-)
LOC122346115 LOC107751416,LOC107579531,LOC107653145,LOC107550279,LOC107667655,LOC107723311 coding downstream 197676 616780 ~ 622514 (-)
tor4ab LOC107653139,LOC107751425,LOC107723309,LOC107550278,LOC107567459,LOC107667676 coding downstream 206363 606370 ~ 613827 (-)
ier3 LOC107723299,LOC107667686,LOC107653130,LOC107567455,LOC107751423,LOC107550277 coding downstream 225541 593503 ~ 594649 (-)
pheta1 LOC107653115,LOC107725116,LOC107594559,LOC107550295,LOC107723306,LOC107687307 coding downstream 264568 549801 ~ 555622 (-)
rtn4r rtn4r,LOC107704387,LOC107599164,LOC107573425,LOC107728899,LOC107667279 coding upstream 75280 898109 ~ 968753 (-)
prodhb prodhb,LOC107730849,LOC107704395,LOC103359847,LOC107566477 coding upstream 230315 1053144 ~ 1075777 (-)
LOC122344672 LOC107599169,LOC100329495,LOC107704423,LOC107750761,LOC107667614,LOC108443917,LOC102231850,LOC103134964,LOC102295583 coding upstream 322700 1145529 ~ 1175274 (-)
nf2a nf2,nf2a,LOC107726729,LOC107599150,LOC108431713 coding upstream 401725 1224554 ~ 1256414 (-)
fbxw8 fbxw8,LOC107667234,LOC107599639,LOC107566479 coding upstream 449069 1271898 ~ 1287998 (-)
G32245 NA non-coding downstream 101780 718137 ~ 718410 (-)
G32239 NA non-coding downstream 115586 704234 ~ 704604 (-)
G32230 NA non-coding downstream 128490 691418 ~ 691700 (-)
G32201 NA non-coding downstream 334420 484962 ~ 485770 (-)
G32193 LOC107594561,LOC107725071,LOC107725113,LOC107704326,LOC107723313,LOC107667397 non-coding downstream 336781 477761 ~ 483409 (-)
G32275 NA non-coding upstream 55081 877910 ~ 879142 (-)
G32292 NA non-coding upstream 229038 1051867 ~ 1052179 (-)
G32409 NA non-coding upstream 466449 1289278 ~ 1291763 (-)
G32440 NA non-coding upstream 690216 1513045 ~ 1513312 (-)
G32463 LOC107599159 non-coding upstream 714569 1537398 ~ 1539368 (-)
wdr31 wdr31,si:ch73-266o15.4,LOC107653158,LOC107667323,LOC107751417 other downstream 189064 622514 ~ 631126 (-)
ddr2l ddr2l,LOC107704361,LOC107725118,LOC107550294,LOC107723312,LOC107667359,LOC108444179 other downstream 237095 556654 ~ 583095 (-)
kcnv2b atp5ib,atp5i,atp5ia,kcnv2b,LOC107703581,LOC107725101,LOC107704252,LOC107594594,LOC107723293 other downstream 432312 382052 ~ 387878 (-)
rictora rictora,LOC107704198,LOC107658248,LOC107567655,LOC107750288,LOC107594576,LOC107725140 other downstream 558519 239951 ~ 261671 (-)
G32104 LOC107725162,LOC107594575 other downstream 783842 35777 ~ 36348 (-)
castor1 gatsl3,LOC107755828,LOC107726730,LOC107704487 other upstream 489775 1312604 ~ 1336187 (-)
lrrc74b lrrc74b,LOC107755819,LOC107667596,LOC107599620 other upstream 519777 1342606 ~ 1354414 (-)
ypel1 ypel1,YPEL1,ypelc,ypel2b,LOC103374080,LOC106586007 other upstream 850195 1673024 ~ 1694286 (-)
G32676 NA other upstream 1143808 1966637 ~ 1967748 (-)
LOC122344636 pex11a,LOC107556261,LOC107714788,LOC107690406,LOC107691149,LOC107715221,LOC107551461 other upstream 1197267 2020096 ~ 2022922 (-)

Expression


Co-expression Network