ccl19a.2 (ccl19a.2,LOC107704660,LOC107755825,LOC107599642,LOC107668736,LOC107599131,LOC107741495)


Basic Information

Item Value
gene id ccl19a.2
gene name ccl19a.2,LOC107704660,LOC107755825,LOC107599642,LOC107668736,LOC107599131,LOC107741495
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 1791828 ~ 1793266 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU47965
CCTGCATATCACACCTGTGCACAATTGTCTGATGATCTTGTGGTGACCAAACACAAAGACAAGAATGCAGACCGCAACAATAACTCTCCTGGTCACTGCTGCAGTCCTCTGGAGCAAAACTGAAGCTTTTTCAGACACAGCTGTGGATTGCTGTCTGACCACCAAGGACACTCGTATTCCAATGCAGATCGTTGTATCTTACTTTCACCAAACCACAGAAAGTGGTTGTGCCATTCCAGCCACTGTGTTCATCACAAAAAAGGACAAGAAACTGTGTGCTCCACCAGAAAAAAACTCCTGGATTACCAAGATCATCACACACTTAGAGAAGAAGAAGACAGCTTCTCAATAGGAACACAGATGGGAGCTGACCCCGATGATCCTGTAAATGCACTAGACGACACTTAAAGACAGGAAGTGATCGTGAATCATGAGCTGCCATGAAcggtgttttttaaaaagttatttgcaAAGTACTTTGGAAACCATGCAGATCTGGGGAATGCGTGGTGGCCAGACTTTGTAAATGGTTAAAAGCAGATATGCtatttgtctgtgtttgtattgttttactgtagCAATTATGATTATCATACATTTGCATGAATCGTCCTGTAAGCTGTGCATGTATTTTTAGAAAGTCTGTTAATGTATGGAGAATAGTTTGCTGTGAGCGGAATGTTTTCTGAgaataatttt
>XM_043240536.1
aattttttgtgtataaatacCTGCACCTGATACCTGCATATCACACCTGTGCACAATTGTCTGATGATCTTGTGGTGACCAAACACAAAGACAAGAATGCAGACCGCAACAATAACTCTCCTGGTCACTGCTGCAGTCCTCTGGAGCAAAACTGAAGCTTTTTCAGACACAGCTGTGGATTGCTGTCTGACCACCAAGGACACTCGTATTCCAATGCAGATCGTTGTATCTTACTTTCACCAAACCACAGAAAGTGGTTGTGCCATTCCAGCCACTGTGTTCATCACAAAAAAGGACAAGAAACTGTGTGCTCCACCAGAAAAAAACTCCTGGATTACCAAGATCATCACACACTTAGAGAAGAAGAAGACAGCTTCTCAATAGGAACACAGATGGGAGCTGACCCCGATGATCCTGTAAATGCACTAGACGACACTTAAAGACAGGAAGTGATCGTGAATCATGAGCTGCCATGAAcggtgttttttaaaaagttatttgcaAAGTACTTTGGAAACCATGCAGATCTGGGGAATGCGTGGTGGCCAGACTTTGTAAATGGTTAAAAGCAGATATGCtatttgtctgtgtttgtattgttttactgtagCAATTATGATTATCATACATTTGCATGAATCGTCCTGTAAGCTGTGCATGTATTTTTAGAAAGTCTGTTAATGTATGGAGAATAGTTTGCTGTGAGCGGAATGTTTTCTGAgaataattttcaaataaattcattttgttaaaa

Function

symbol description
ccl19a.2 Predicted to enable CCR chemokine receptor binding activity and chemokine activity. Predicted to be involved in several processes, including cellular response to cytokine stimulus; leukocyte chemotaxis; and positive regulation of ERK1 and ERK2 cascade. Predicted to act upstream of or within immune response. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Orthologous to human CCL19 (C-C motif chemokine ligand 19).

NR:

description
C-C motif chemokine 4-like

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0005576 extracellular region cellular_component
GO:0008009 chemokine activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU47965 False 699 TUCP 0.41 4 1791860 1793243
XM_043240536.1 True 754 mRNA 0.40 4 1791828 1793266

Neighbor

gene id symbol gene type direction distance location
ydjc LOC107741491,LOC107704612,LOC107599608,LOC107755843,LOC107668745,LOC107599128 coding upstream 12402 1773965 ~ 1779426 (+)
LOC122344671 LOC107755842,LOC107599645,LOC107599132 coding upstream 46657 1743315 ~ 1745171 (+)
ppil2 ppil2 coding upstream 139412 1623097 ~ 1652416 (+)
gal3st1a gal3st1,gal3st1a,LOC107741514,LOC107653284,LOC107755837,LOC107668734 coding upstream 169501 1616062 ~ 1622327 (+)
pes pes1,pes,LOC107704970 coding upstream 179280 1603813 ~ 1612548 (+)
ccl19a.1 LOC107704652,LOC107741512 coding downstream 1268 1794534 ~ 1796438 (+)
tctn2 LOC107704714,LOC107741513,LOC107599155 coding downstream 3568 1796834 ~ 1806041 (+)
sec14l8 sec14l8,LOC107741494,LOC107599607,LOC107668747,LOC107704732,LOC107755846,LOC107599126,LOC108431737,LOC108255515 coding downstream 13684 1806950 ~ 1820557 (+)
LOC122346045 ddr2l,LOC107704361,LOC107550294,LOC107725118,LOC107667359,LOC107723312 coding downstream 58341 1851607 ~ 1864706 (+)
LOC122346048 prodhb,prodha,LOC107730849,LOC107704395,LOC107661597,LOC106568196 coding downstream 72329 1865595 ~ 1876048 (+)
G32552 NA non-coding upstream 6186 1785401 ~ 1785642 (+)
G32542 NA non-coding upstream 24938 1766596 ~ 1766890 (+)
LOC122346170 NA non-coding upstream 26421 1762921 ~ 1765407 (+)
G32540 NA non-coding upstream 29546 1762005 ~ 1762282 (+)
G32539 NA non-coding upstream 29857 1761564 ~ 1761971 (+)
G32643 NA non-coding downstream 164852 1958118 ~ 1958584 (+)
G32644 NA non-coding downstream 172913 1966179 ~ 1966378 (+)
G32646 NA non-coding downstream 198283 1991549 ~ 1993168 (+)
G32642 NA non-coding downstream 202754 1996020 ~ 1997056 (+)
G32649 NA non-coding downstream 204913 1998179 ~ 1998680 (+)
selenoe fep15,LOC107667262,LOC107566481,LOC107750764,LOC108443918,LOC101066385,LOC105931211,LOC100703742 other upstream 676423 1112264 ~ 1115405 (+)
G32277 NA other upstream 734675 1055193 ~ 1057153 (+)
tal2 tal2,LOC107594599,LOC107725114,LOC107723303,LOC107667406 other upstream 1340463 450168 ~ 451365 (+)
LOC122346012 cunh9orf84,LOC107704297 other upstream 1344342 432779 ~ 447486 (+)
susd1 susd1,LOC107594557,LOC107704917,LOC107572260,LOC107667560 other upstream 1360363 419242 ~ 431465 (+)
G32611 prrc2b,LOC107704672 other downstream 29388 1822654 ~ 1826114 (+)
G32620 prrc2b,LOC107704672,LOC107562325 other downstream 41882 1835148 ~ 1843013 (+)
LOC122346050 nutf2,LOC107726276,LOC107692933,LOC107733565 other downstream 107361 1900627 ~ 1905499 (+)
LOC122345711 LOC107556260,LOC107714787,LOC107691117,LOC107551460,LOC107715220,LOC107690391,LOC565819 other downstream 216951 2010217 ~ 2019150 (+)
G32706 LOC107560224,LOC107681222,LOC107709689,LOC107690695,LOC107757958,LOC107587469 other downstream 471879 2265145 ~ 2268194 (+)

Expression


Co-expression Network