LOC122346050 (nutf2,LOC107726276,LOC107692933,LOC107733565)


Basic Information

Item Value
gene id LOC122346050
gene name nutf2,LOC107726276,LOC107692933,LOC107733565
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 1900627 ~ 1905499 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU48080
TTGATGCGTCATGCCTTACGTGGGAGGGTCAGCAATTCCAGGGAAAAGCGGCAATTGTCGAAAAGCTTTCCagCCTGCCCTTCACAAAAATAGCTCACAGCATCACAGCACAAGACCATCAGCCCACCCCTGATAGCTGCATATTGAGTATGGTAGTAGGCCAACTAAAAGCAGATGATGACCCCATCATGGGATTCCATCAGAGCTTCATCCTGAAGAACATTAACGAGGCGTGGGTTTGCACCAATGACATGTTCCGCCTGGCGCTGCACAATTTTGGTTAAACGCCCCATGGCTAGCAGGAGGGAAGTGGGGGAAGGTGGAGGATGGGGTTCTACCCTGATGACGCCCAAACCTGTCAATCAGCCCTTCATTCATCACACTCGAGAGAAACGCCACCGGATTACAGCGGTCAATCACAGAAAACGTGCAGGCACATACAGTACTGCCTCTACTACAGAAATGACATGTTTCTTTGCTGAAAGCCCACACATCCATCAAACTGACCCTTTTCCTTCCTGCAACCTGCATGATGATGGGGAGCTTAAATATCAGAGGACGCCCTGACCAGGACAAATTCGTATTAACCTAACCTCGGCTgtttgatatttacattttagttgctGATTTTGACTCTGAAATAACAACTGTCGTACTGTCTTTCTTTGCTTTAGTACAAAGTGTGTTCAGCTTGTTTTTAGAATATGCCCATTGaagtttaatcttttttttttttttttttttttttt
>TU48082
TTGATGCGTCATGCCTTACGTGGGAGGGTCAGCAATTCCAGGGAAAAGCGGCAATTGTCGAAAAGCTTTCCagCCTGCCCTTCACAAAAATAGCTCACAGCATCACAGCACAAGACCATCAGCCCACCCCTGATAGCTGCATATTGAGTATGGTAGTAGGCCAACTAAAAGCAGATGATGACCAAGTGCTGGGCTTCCACCAGACCTTTCTGTTGAAAAGTATCAACACTGCCTGGGTTTGCACCAACGAGGTCTTCAGGCTTGCCCTGCACAACCTTTGAGCTTAAGGGCTCTCTGTGGTCACATGGCCTTTCCTCCTTCTCTTAATGTCTGCAGATGATGACCCCATCATGGGATTCCATCAGAGCTTCATCCTGAAGAACATTAACGAGGCGTGGGTTTGCACCAATGACATGTTCCGCCTGGCGCTGCACAATTTTGGTTAAACGCCCCATGGCTAGCAGGAGGGAAGTGGGGGAAGGTGGAGGATGGGGTTCTACCCTGATGACGCCCAAACCTGTCAATCAGCCCTTCATTCATCACACTCGAGAGAAACGCCACCGGATTACAGCGGTCAATCACAGAAAACGTGCAGGCACATACAGTACTGCCTCTACTACAGAAATGACATGTTTCTTTGCTGAAAGCCCACACATCCATCAAACTGACCCTTTTCCTTCCTGCAACCTGCATGATGATGGGGAGCTTAAATATCAGAGGACGCCCTGACCAGGACAAATTCGTATTAACCTAACCTCGGCTgtttgatatttacattttagttgctGATTTTGACTCTGAAATAACAACTGTCGTACTGTCTTTCTTTGCTTTAGTACAAAGTGTGTTCAGCTTGTTTTTAGAATATGCCCATTGaagtttaatctttttttttttttttttttttttttNNCTAGCTATCCAAAGAACACCACCCTAATTTCCCCTTCCCTTCAGACCAGTGTGCTTCCCACTTTCTGCTCACTGCTCTCTGTGACAATAATTTCCAAGCCACGATacacaataaaacctttgacTTTTTCTTAAAAACGTCATCATCTTGTTCATCCCCCTGTCTGGTTTTGCGTCtgccttttttccctttttctatGCTTacctgtt
>XM_043240703.1
atgggtgccATTGATGCGTCATGCCTTACGTGGGAGGGTCAGCAATTCCAGGGAAAAGCGGCAATTGTCGAAAAGCTTTCCagCCTGCCCTTCACAAAAATAGCTCACAGCATCACAGCACAAGACCATCAGCCCACCCCTGATAGCTGCATATTGAGTATGGTAGTAGGCCAACTAAAAGCAGATGATGACCCCATCATGGGATTCCATCAGAGCTTCATCCTGAAGAACATTAACGAGGCGTGGGTTTGCACCAATGACATGTTCCGCCTGGCGCTGCACAATTTTGGTTAAACGCCCCATGGCTAGCAGGAGGGAAGTGGGGGAAGGTGGAGGATGGGGTTCTACCCTGATGACGCCCAAACCTGTCAATCAGCCCTTCATTCATCACACTCGAGAGAAACGCCACCGGATTACAGCGGTCAATCACAGAAAACGTGCAGGCACATACAGTACTGCCTCTACTACAGAAATGACATGTTTCTTTGCTGAAAGCCCACACATCCATCAAACTGACCCTTTTCCTTCCTGCAACCTGCATGATGATGGGGAGCTTAAATATCAGAGGACGCCCTGACCAGGACAAATTCGTATTAACCTAACCTCGGCTgtttgatatttacattttagttgctGATTTTGACTCTGAAATAACAACTGTCGTACTGTCTTTCTTTGCTTTAGTACAAAGTGTGTTCAGCTTGTTTTTAGAATATGCCCATTGaagtttaatcttttttttttttttttttt

Function

symbol description
nutf2 Predicted to be involved in protein import into nucleus. Predicted to be part of nuclear pore central transport channel. Human ortholog(s) of this gene implicated in diabetic retinopathy. Orthologous to human NUTF2 (nuclear transport factor 2).

NR:

description
PREDICTED: nuclear transport factor 2 isoform X2

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48080 False 749 TUCP 0.45 3 1901458 1905288
TU48082 True 1122 lncRNA 0.45 4 1901458 1905499
XM_043240703.1 False 753 mRNA 0.46 4 1900627 1905282

Neighbor

gene id symbol gene type direction distance location
LOC122346055 nutf2l,LOC107592026,LOC107748755,LOC107697171,LOC107688399,LOC107593625,LOC107739636,LOC108410494,LOC103027823 coding upstream 202 1899595 ~ 1900425 (+)
LOC122345241 kat2b,LOC107748684,LOC107696888,LOC107593605,LOC107592021,LOC107739562,LOC107688328,LOC108411559 coding upstream 8523 1882015 ~ 1892104 (+)
LOC122345240 rab5aa,LOC107592022,LOC105904716,LOC101476881,LOC100701272 coding upstream 20619 1878085 ~ 1880008 (+)
LOC122346048 prodhb,prodha,LOC107730849,LOC107704395,LOC107661597,LOC106568196 coding upstream 24579 1865595 ~ 1876048 (+)
LOC122346045 ddr2l,LOC107704361,LOC107550294,LOC107725118,LOC107667359,LOC107723312 coding upstream 35921 1851607 ~ 1864706 (+)
LOC122346053 edc4,LOC107733561,LOC107726309 coding downstream 1428 1906927 ~ 1917452 (+)
LOC122346081 LOC107681222,LOC107709689,LOC107560224,LOC107757958,LOC107587469,LOC107690695 coding downstream 273084 2178583 ~ 2207545 (+)
LOC122346086 LOC107587426,LOC107757959,LOC107709681,LOC107560220,LOC107681216,LOC107560224,LOC107709689 coding downstream 344159 2249658 ~ 2264585 (+)
LOC122345419 man1b1b,LOC107709694,LOC107681241,LOC107560236,LOC107757969,LOC107690671,LOC107587425 coding downstream 364714 2270213 ~ 2277034 (+)
LOC122345384 H2AFV,h2afvb,LOC107386217,LOC105007341,LOC107668744 coding downstream 623003 2528502 ~ 2531593 (+)
G32552 NA non-coding upstream 114985 1785401 ~ 1785642 (+)
G32542 NA non-coding upstream 133737 1766596 ~ 1766890 (+)
LOC122346170 NA non-coding upstream 135220 1762921 ~ 1765407 (+)
G32540 NA non-coding upstream 138345 1762005 ~ 1762282 (+)
G32539 NA non-coding upstream 138656 1761564 ~ 1761971 (+)
G32643 NA non-coding downstream 52619 1958118 ~ 1958584 (+)
G32644 NA non-coding downstream 60680 1966179 ~ 1966378 (+)
G32646 NA non-coding downstream 86050 1991549 ~ 1993168 (+)
G32642 NA non-coding downstream 90521 1996020 ~ 1997056 (+)
G32649 NA non-coding downstream 92680 1998179 ~ 1998680 (+)
G32620 prrc2b,LOC107704672,LOC107562325 other upstream 57614 1835148 ~ 1843013 (+)
G32611 prrc2b,LOC107704672 other upstream 74513 1822654 ~ 1826114 (+)
ccl19a.2 ccl19a.2,LOC107704660,LOC107755825,LOC107599642,LOC107668736,LOC107599131,LOC107741495 other upstream 107361 1791828 ~ 1793266 (+)
selenoe fep15,LOC107667262,LOC107566481,LOC107750764,LOC108443918,LOC101066385,LOC105931211,LOC100703742 other upstream 785222 1112264 ~ 1115405 (+)
G32277 NA other upstream 843474 1055193 ~ 1057153 (+)
LOC122345711 LOC107556260,LOC107714787,LOC107691117,LOC107551460,LOC107715220,LOC107690391,LOC565819 other downstream 104718 2010217 ~ 2019150 (+)
G32706 LOC107560224,LOC107681222,LOC107709689,LOC107690695,LOC107757958,LOC107587469 other downstream 359646 2265145 ~ 2268194 (+)
LOC122345783 npffr1l2,LOC107755826,LOC107599640,LOC107668729,LOC107708240,LOC107654224 other downstream 721585 2627084 ~ 2649361 (+)
tbx1 tbx1,LOC107755862,LOC107699917,LOC107708247 other downstream 1423301 3328800 ~ 3343070 (+)
G33015 NA other downstream 1699687 3605186 ~ 4144396 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013414 nutf2 coding NC_007129.7 CM002902.2 21913685 ~ 21929451 (-)