CI01000004_13197104_13205895 (KLHL20)


Basic Information

Item Value
gene id CI01000004_13197104_13205895
gene name KLHL20
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 13197104 ~ 13206585 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_13197104_13205895.mRNA
GGGTACCAGTGCACGCCCAGATACCACAGGAATGGATATCACAAGTCGTTGCACCCTGGGAGACCCCAACAAGCTCCCAGAGGGAGTGCCTCAGCCTGCCAGGATGCCCTACATCTCGGACAAGCACCCTCGGCAGACCCTGGAGGTCATCAACCTGCTCCGCAAGCATCGAGAGCTGTGTGATGTGGTTTTGGTGGTGGGAGCCAAGAAGATTTATGCACACCGTGTGATCCTGTCTGCCTGCAGCCCCTATTTCAGAGCCATGTTCACTGGGGAACTGGCCGAGAGCCGACAGACGGAAGTCGTCATCCGGGATATTGATGAACGAGCCATGGAGCTGCTAATCGATTTTGCCTATACCTCGCAGGTGACTGTGGAGGAGGGAAATGTGCAGACTTTGCTGCCCGCTGCCTGCTTGTTACAGCTGGCAGAGATTCAGGAAGCCTGCTGTGAATTCCTCAAGCGTCAACTAGACCCCTCCAACTGCCTGGGCATCAGGGCCTTCGCCGACACTCACTCCTGCAGAGAGCTGCTGCGTATTGCTGATAAGTTCACCCAGCATAACTTTCAGGAGGTGATGGAGAGTGAAGAGTTCATGCTGCTGCCAGCCAACCAGCTGATAGACATCATCTCCAGTGATGAGCTCAATGTTCGGAGTGAGGAGCAGGTGTTTAATGCTGTAATGGCCTGGGTTAAATACAGCATTCAGGAACGCAGGCCTCAGCTGCCGCAGGTTCTCCAACATGTGCGTCTTCCCCTCTTGAGCCCGAAGTTTCTGGTTGGGACGGTGGGTTCAGATCCTCTGATCAAGAGTGATGAGGAGTGTAGGGACTTGGTCGATGAAGCCAAGAACTACCTCCTGCTACCCCAAGAGCGCCCCCTAATGCAGGGACCTAGAACCCGGCCTAGAAAGCCTATTCGTTGTGGAGAAGTACTGTTTGCTGTGGGAGGTTGGTGCAGTGGTGACGCCATCTCAAGCGTTGAGCGCTACGACCCCCAGACCAACGAGTGGAGGATGGTGGCATCCATGAGCAAACGGCGCTGTGGAGTTGGCGTCAGTGTTCTGGATGATCTGTTGTATGCTGTTGGCGGACATGACGGCTCGTCTTATCTCAATAGTGTGGAGAGGTATGACCCTAAGACTAACCAGTGGAGCAGTGACGTCGCCCCTACTAGCACCTGCAGGACCAGTGTGGGTGTTGCTGTATTAGGGGGGTACCTGTATGCTGTGGGAGGTCAGGATGGCGTTTCCTGTCTCAACATTGTAGAAAGGTATGATCCGAAAGAGAATAAGTGGACTCGTGTTGCCTCAATGAGTACCAGGCGGTTAGGTGTGGCTGTAGCCGTGTTAGGAGGTTTTCTTTATGCAGTAGGTGGCTCAGATGGCACATCCCCACTAAATACAGTGGAAAGGTATAACCCGCAAGAGAACCGATGGCATACGGTGGCACCAATGGGGACCCGTCGGAAACACCTAGGCTGTGCCGTGTACCAGGACATGATCTACTCTGTGGGTGGCAGAGACGATACCACAGAACTGAGCAGCGCTGAGCGATACAATCCCAGAACCAATCAGTGGTCCCCTGTGGTCGCCATGACATCCAGAAGGAGCGGGGTTGGTTTAGCAGTAGTAAATGGCCAGTTGATGGCAGTTGGAGGCTTTGACGGTACCACGTACCTGAAAACTATAGAAGTCTATGACCCCGATGCCAACACGTGGAGGCTCTATGGTGGAATGAACTACAGGAGGTTGGGAGGTGGTGTTGGTGTAATAAAAATGACTCACTGTGAATCACATATATGCATAGCCAAAGGCAGCGATTTGAAGAGAGAAACAGCAGCCGGAAAAGCATCAGCCAGAGCATTTGTTTTTCTGGAAGGAACTATCTGTTTGACTGCATTGAAGAATTACAGTAACCTGAAACACATCACTGGGGATTGGTGTGAATGACGCTCGTGTTTCCCTGATTGATGTTCTGGTCTGAATTGGATGCACTGTGATTTCTTTACCATTTCTTTAACTTGAGTTTTTTTTATGAGTTGTACACTGAGCATGATCTGTTCCTCTGCATTCTTACCAGATGTAAGCAGATTAGTTGAGTTTCTATCTTTGGTGTACTGAAAATGCAGTTCCTCCCTGAAACTTTTGCAATCTAACGAAGGCTGTTGCAGAAGAAAATAAGTTATTTTTGAAGCAGTCAAAAACAGGTTTGACGTATTATCAATTTGTTTACTTTTATACAACCGAATGCATCAATGAGTCAGTCCATGCACTTTAATCCACTAAGATTTTTTCTATTAAAGTCTGTATTTTTTTTTTTTTTTATAAATATTGTTGGATGTATAGTTTTATGCAAGTTTAAGGTTTTTTTCTGAAATTTCAGAACAGGTTTGTAGTAGTAGCAGCCTGCACGTATGGTCGGAAATGTAATGTTAAGCTTGTTACTGAATATGAGATGAAACTGCCCTTTCATTTTTTTTTTTTTTTTTTTTAATGAACACTCATTTTCCCACAGGACAGTAATGTGTCCTAATCTTGGTGTTGAAAAATGGTTACATACAGTATATCTTCCATGATCTTACCTTATTTAATTTTAAAGCTGTTCAACTGTCTATACATTTCAAAACTTTGAAAGTTGAA

Function

symbol description
klhl20 Predicted to be involved in protein ubiquitination. Orthologous to human KLHL20 (kelch like family member 20).

GO:

id name namespace
GO:0015629 actin cytoskeleton cellular_component

KEGG:

id description
K10457 KLHL20, KLEIP; kelch-like protein 20

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_13197104_13205895.mRNA True 2641 mRNA 0.47 12 13197104 13206585

Neighbor

gene id symbol gene type direction distance location
CI01000004_13062721_13076100 KIF2C coding upstream 120876 13062721 ~ 13076228 (+)
CI01000004_13043279_13051835 NA coding upstream 145140 13043237 ~ 13051964 (+)
CI01000004_12984968_12997831 KISS1R, KISS1RA, GPR54 coding upstream 199041 12984968 ~ 12998063 (+)
CI01000004_12810922_12817913 VWC2L.2 coding upstream 378557 12810572 ~ 12818547 (+)
CI01000004_12764916_12775989 SLC6A9 coding upstream 420932 12764916 ~ 12776172 (+)
CI01000004_13211489_13233786 DARS2 coding downstream 4904 13211489 ~ 13234194 (+)
CI01000004_13467845_13475703 NA coding downstream 261260 13467845 ~ 13476204 (+)
CI01000004_13512059_13706090 ASTN1 coding downstream 305474 13512059 ~ 13706090 (+)
CI01000004_13708254_13713625 NA coding downstream 501302 13707887 ~ 13714179 (+)
CI01000004_13785437_13800307 RFWD2.L, RFWD2 coding downstream 578231 13784816 ~ 13800307 (+)
G32595 NA non-coding upstream 3082 13193719 ~ 13194022 (+)
G32594 NA non-coding upstream 3943 13192718 ~ 13193161 (+)
G32592 NA non-coding upstream 14138 13182696 ~ 13182966 (+)
G32591 NA non-coding upstream 18654 13178229 ~ 13178450 (+)
G32588 NA non-coding upstream 25429 13171348 ~ 13171675 (+)
G32599 NA non-coding downstream 25002 13231587 ~ 13232951 (+)
G32894 NA non-coding downstream 50345 13256930 ~ 13257222 (+)
G32926 NA non-coding downstream 122729 13329314 ~ 13329550 (+)
G32927 NA non-coding downstream 124599 13331184 ~ 13331384 (+)
G33029 NA non-coding downstream 334008 13540593 ~ 13543079 (+)
CI01000004_12646972_12652534 NA other upstream 541393 12646838 ~ 12652570 (+)
G31865 NA other upstream 1001957 12192130 ~ 12197418 (+)
CI01000004_11666900_11667179 NA other upstream 1529445 11666900 ~ 11667659 (+)
G31710 NA other upstream 1554704 11637251 ~ 11642400 (+)
G30797 NA other upstream 2699316 10497376 ~ 10497788 (+)
CI01000004_14036114_14036449 KIAA0040 other downstream 816962 14035393 ~ 14039142 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other downstream 1884659 15091200 ~ 15097173 (+)
G34220 NA other downstream 2732772 15939357 ~ 15939950 (+)
G33815 NA other downstream 2856830 16063415 ~ 16066464 (+)
G34400 NA other downstream 3770743 16971995 ~ 17025976 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00005056 klhl20 coding CM030140.1 CM030140.1 14066698 ~ 14075633 (-)