G32740 (cacna1ba,LOC107709695,LOC107757972,LOC107587427,LOC107681248,LOC107560222,LOC107690670)


Basic Information

Item Value
gene id G32740
gene name cacna1ba,LOC107709695,LOC107757972,LOC107587427,LOC107681248,LOC107560222,LOC107690670
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 2422985 ~ 2424812 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU48232
CCACAGCGCCCTCAGGAGGTGAATCTGAATGACTACACTCTAGCGAAACCTGTTCAAGAAcgacaccaccaccaccaccatcatcaccgATGCCACCATCGTAGGGACAGAGACAAGAAACAGAGATCCCTGGACAGGTCGCCCACTGGACAACACAAAGCTGCAGGCACAGCAGCTGACCCTGTAGAGGAGAGGCCACATGACCGAGGTCGTTCCCATGAGAGGAAGCATCATTCGTCTTCGACTGAGAAGCAGCGGTATTACTCTTGTGATCGCTACGGCAGTCGGGAACACTGTCCCAGCAAGTCTGCCGTGGCAAGCTGTGCCACCTCGCCCAGCGAGGCCCAGGAGGCCAGTCTCAACAAGCAGGTGGGATGGGGTTGTCAAGACAGGACAGGGGCATGTGTTCAAATGAAAGGCTAGGTCAGAGGTTAGAAACTGGATAATGATCAGGGAATAAATATCTTTTGAGTTCCATATAATGAAAACGCGTTAGGGATTTGAGACcagataaaaattaaatagttatgAAGGTGAAAATCTGTAGATTGTGCCAAGATGCATTAAACAGTAATGAAGATAATGTTCCGAGTTAAACACAGGTTACGCTTTATGGTCTGTGGCATCTGTGTCCCTCAATATAAATAAGCCATACACTTATAGTGGAAACCAGTGGGATTTTTAAAACGCACACAGTTTAACACATAATTAAGTCTTAAATATTGTACATTAACAATGAATTTTTTAACTTCTGTCATTACCATACACATGGTATCTTTCACGGTATGCATGAAAGGGCGCTAGAAAGAGAGAGCTTGCATAACCTTTTGCCAAGGACTGGAGCAAAGTTctagataaattaaaaaaaaactactggaTCATTT

Function

symbol description
cacna1ba Predicted to enable voltage-gated calcium channel activity. Predicted to be involved in calcium ion import and chemical synaptic transmission. Predicted to act upstream of or within calcium ion transmembrane transport and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated calcium channel complex. Is expressed in atrium; brain; cardiac ventricle; and liver. Human ortholog(s) of this gene implicated in Lambert-Eaton myasthenic syndrome and dystonia 23. Orthologous to human CACNA1B (calcium voltage-gated channel subunit alpha1 B).

NR:

description
PREDICTED: voltage-dependent N-type calcium channel subunit alpha-1B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48232 True 884 lncRNA 0.45 2 2422985 2424812

Neighbor

gene id symbol gene type direction distance location
LOC122346100 LOC107757959,LOC107587426,LOC107709681,LOC107681216,LOC107560221,LOC107560220 coding downstream 4932 2385151 ~ 2418053 (-)
LOC122345768 LOC107562125,LOC107690349,LOC107554462,LOC107715242 coding downstream 323804 2090152 ~ 2099181 (-)
LOC122346063 LOC107747844,LOC107554104,LOC107556635,LOC107667225 coding downstream 332829 2087785 ~ 2090156 (-)
LOC122344882 gnrhr4,LOC107715601,LOC107575089,LOC107690392,LOC107715190,LOC107691141 coding downstream 364252 2052705 ~ 2058733 (-)
LOC122344761 ngly1,LOC107748685,LOC107696895,LOC107739561,LOC107688325,LOC107579448 coding downstream 524395 1893780 ~ 1898590 (-)
purba LOC107737074,LOC107755849,LOC107668742,LOC107670383,LOC107599601,LOC108431741,LOC107580671 coding upstream 99747 2524559 ~ 2527337 (-)
zgc:65851 zgc:65851,LOC107670379,LOC107708255,LOC107668750,LOC107599600,LOC107755851,LOC107573085 coding upstream 111213 2536025 ~ 2543574 (-)
mxd1 mxd1,LOC107670395,LOC107708253 coding upstream 130664 2555476 ~ 2579803 (-)
LOC122345702 figla coding upstream 182402 2607214 ~ 2609585 (-)
tet3 LOC107654213,LOC107708251,LOC107557386,LOC107697244,LOC107551814,LOC107755856 coding upstream 399359 2824171 ~ 2866043 (-)
LOC122344845 LOC107709689,LOC107560224,LOC107681222 non-coding downstream 38284 2383907 ~ 2384701 (-)
LOC122344860 LOC107560224,LOC107690695,LOC107757958,LOC107681222,LOC107709689,LOC107587469 non-coding downstream 43590 2377967 ~ 2379395 (-)
G32727 LOC107681241 non-coding downstream 47322 2374002 ~ 2375663 (-)
LOC122346102 NA non-coding downstream 66205 2355966 ~ 2356780 (-)
G32707 NA non-coding downstream 153655 2268820 ~ 2269330 (-)
LOC122346060 cacna1ba,LOC107560222,LOC107587427,LOC107709695 non-coding upstream 8474 2433286 ~ 2435700 (-)
G32870 NA non-coding upstream 227632 2652444 ~ 2728807 (-)
G32881 NA non-coding upstream 325147 2749959 ~ 2797599 (-)
G32882 NA non-coding upstream 340471 2765283 ~ 2766771 (-)
G32883 NA non-coding upstream 342967 2767779 ~ 2774190 (-)
LOC122344636 pex11a,LOC107556261,LOC107714788,LOC107690406,LOC107691149,LOC107715221,LOC107551461 other downstream 400063 2020096 ~ 2022922 (-)
G32676 NA other downstream 455237 1966637 ~ 1967748 (-)
ypel1 ypel1,YPEL1,ypelc,ypel2b,LOC103374080,LOC106586007 other downstream 728699 1673024 ~ 1694286 (-)
lrrc74b lrrc74b,LOC107755819,LOC107667596,LOC107599620 other downstream 1068571 1342606 ~ 1354414 (-)
castor1 gatsl3,LOC107755828,LOC107726730,LOC107704487 other downstream 1086798 1312604 ~ 1336187 (-)
G32857 NA other upstream 71692 2496504 ~ 2554146 (-)
snrnp27 snrnp27 other upstream 155736 2580548 ~ 2585452 (-)
add2 add2,LOC107668755 other upstream 161775 2586587 ~ 2605917 (-)
LOC122344624 LOC107699921,LOC107708239,LOC107755860,LOC107697241,LOC107551809 other upstream 510931 2935743 ~ 3012819 (-)
G32908 sema4c,LOC107697240,LOC107708238,LOC107699920 other upstream 526650 2951462 ~ 2960177 (-)

Expression


Co-expression Network