LOC122345783 (npffr1l2,LOC107755826,LOC107599640,LOC107668729,LOC107708240,LOC107654224)


Basic Information

Item Value
gene id LOC122345783
gene name npffr1l2,LOC107755826,LOC107599640,LOC107668729,LOC107708240,LOC107654224
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 2627084 ~ 2649361 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU48271
GTGAAAGTAGCGCAAGGACATTGAATCGCGGCGCGTCTCCGGGGCACCGGAGTGAGAAGTGTGCGGTCCGCGTCTGCTGGTGCCTTGCAAGAGGGATCCAGGACGGCAGAAATGGAGACGTCGCAGGAGCTTTTTTTCAACAGCAGCCTCCAGAGCGAATACGCGAACCACAGTAACATCACCAACCACACCAGCATCACCTACTACCCTTACTACCAGCACTCTCTCT
>XM_043240235.1
ATGGCCGGAGACCTCGGTGAAATGGAGACGTCGCAGGAGCTTTTTTTCAACAGCAGCCTCCAGAGCGAATACGCGAACCACAGTAACATCACCAACCACACCAGCATCACCTACTACCCTTACTACCAGCACTCTCTCTCCGTGGCTGCCGTCCTGACCGTGGCCTACCTCTTCATTTTCCTGCTGTGCATGGTGGGAAACGGCTTGGTGTGTCTGATTGTGCTGGAGAACCGGCGGATGAGGACGGTCACCAACCTCTTCATCCTCAACCTGGCCGTGAGCGACCTTCTGGTGGGCGTCTTCTGCATCCCGACCACCCTGGTGGACAACCTCATTACAGGTAACCCGTTCACGAACACCGTGTGTAAGATGAGCGGTCTGGTGCAGGGCATGTCGGTCTCGGCCTCCGTCTTCACGCTGGTGGCCATCGCCGTGGACAGGTTTCGTTGCATCGTGTATCCCTTCCAGCCCAAACTGACCCTGCTGGTGGCCAAAGTGACCATAGTGATGATCTGGGGGCTCGCGGTGGTGATTATGTGTCCGTCGGCGGTCACTTTAACCGTGAAGAGAGTGGAGCACCACTACATGGTCCACGACGAAGACTACAACCACACATACCCTCTGTTCTCCTGCTTCGAGAACTGGGCCAGCCCACAGATGAGGAAGGTCTACACCACCGTCCTGTTCGCTCACATCTATCTCATCCCTCTCACGCTGATCACGCTCATGTACGGACGCATCGGGATCAAGCTCTACACCACCTCGGTCATCTCCGGGAACGACCAGCAGGAGAGCGCGCAGTCCCACCAGGAAGGAAGGCCGCTCATTTCCCAGAAGAAGATTAAAGTGATTAAGATGCTGAGCGTGGTGGCGCTTTTATTCACGCTCTCCTGGCTGCCTCTCTGGACTCTGATGCTCCTCACCGATTACGGCGGTCTTAACGAAGACGAGCTGGATCTTCTGAGCGGCTATGTGTTTCCGTTCGCTCACTGGCTGGCGTTTTCCAACTCCAGCGTCAACCCTATTATCTACGGCTACTATAATGAGAACTTCAAGCGGGGTTTTCAGGCGGTGTGCAGAACGCATTCGTGCTGCTGCGGCGGGGTGAAGACGAGGAGCAGACCGCGACGGAAGTCCAGAGGAGACGCGAGGGATCCCGCGGTCAGCTCTAATCCCTTGGCCTTTGGTGGAAGGAACCGGGTTTACACCGACGGAGACGTGAAGGACTCCAGGACCTGTCTGGAGCTGGAGCACAGGAGAACCATTCGACTCTGTAATAACTCGGTCTGCTCGGATGACACGGGATCCAGCGTGGGATCCGGGATTAAAGGGGCTATGAACCAGAAAGTGTTTCGGACGGAGGAGGCAGAGAAAATAAGCCCGGTCAGGGTGGGTAAAAACCAAGCCTGGGACCAGTAGATGGATTATTCAAGAGACTTTCCAGACCTTTCACTTAATCAGCAGGACGATTCGGGCCTAAACATGTCTTTTGTGAAAACTATTATCTTCAACGGTTTGACAGCACACGGGGTTCAATGctcacaacacaaacaaacaccaaaacaaGCTGCAAatacctgcacacacacacacacacacacacacacacacacacacacacacacacaaaatgagccatgtcttttgtttttgtgtatttggcaCCATTTGTATAAATCCATGGTTATTTGTGCATGGTTTAACTatagtaaacatttttattaaactaca

Function

symbol description
npffr1l2 Predicted to enable G protein-coupled receptor activity and peptide binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within signal transduction. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in forebrain and hypothalamus. Orthologous to human NPFFR1 (neuropeptide FF receptor 1).

NR:

description
PREDICTED: neuropeptide FF receptor 1-like

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008188 neuropeptide receptor activity molecular_function

KEGG:

id description
K08375 NPFFR2; neuropeptide FF receptor 2

RNA

RNA id representative length rna type GC content exon number start site end site
TU48271 False 229 lncRNA 0.56 2 2627084 2641100
XM_043240235.1 True 1731 mRNA 0.53 4 2639156 2649361

Neighbor

gene id symbol gene type direction distance location
LOC122345384 H2AFV,h2afvb,LOC107386217,LOC105007341,LOC107668744 coding upstream 95491 2528502 ~ 2531593 (+)
LOC122345419 man1b1b,LOC107709694,LOC107681241,LOC107560236,LOC107757969,LOC107690671,LOC107587425 coding upstream 350050 2270213 ~ 2277034 (+)
LOC122346086 LOC107587426,LOC107757959,LOC107709681,LOC107560220,LOC107681216,LOC107560224,LOC107709689 coding upstream 362499 2249658 ~ 2264585 (+)
LOC122346081 LOC107681222,LOC107709689,LOC107560224,LOC107757958,LOC107587469,LOC107690695 coding upstream 419539 2178583 ~ 2207545 (+)
LOC122346053 edc4,LOC107733561,LOC107726309 coding upstream 709632 1906927 ~ 1917452 (+)
LOC122345789 npffr1l2,LOC107755826,LOC107599640,LOC107668729,LOC107708240,LOC107654224 coding downstream 67652 2717013 ~ 2725424 (+)
hk2 hk2,LOC107668748,LOC107755855,LOC106585103,LOC108255852,LOC108411364,LOC107708252,LOC107599625 coding downstream 109994 2759355 ~ 2812420 (+)
pebp1 pebp1 coding downstream 768543 3417904 ~ 3422144 (+)
suds3 suds3,LOC107569732,LOC107708245 coding downstream 847888 3497249 ~ 3505203 (+)
hspb8 hspb8,LOC107720866 coding downstream 961111 3610472 ~ 3619055 (+)
G32770 figla non-coding upstream 17483 2608216 ~ 2609601 (+)
G32749 NA non-coding upstream 27445 2598250 ~ 2599639 (+)
G32765 NA non-coding upstream 47301 2578586 ~ 2579783 (+)
G32737 NA non-coding upstream 206253 2418377 ~ 2420831 (+)
G32702 NA non-coding upstream 383197 2243667 ~ 2243887 (+)
G32798 NA non-coding downstream 216805 2866166 ~ 2867373 (+)
G32819 sema4c,LOC107557380,LOC107708238,LOC107699920,LOC107697240 non-coding downstream 298732 2948093 ~ 3024488 (+)
LOC122345883 NA non-coding downstream 531448 3180809 ~ 3186522 (+)
G32934 NA non-coding downstream 643913 3293274 ~ 3293558 (+)
G32955 NA non-coding downstream 738133 3387494 ~ 3387728 (+)
G32706 LOC107560224,LOC107681222,LOC107709689,LOC107690695,LOC107757958,LOC107587469 other upstream 358890 2265145 ~ 2268194 (+)
LOC122345711 LOC107556260,LOC107714787,LOC107691117,LOC107551460,LOC107715220,LOC107690391,LOC565819 other upstream 607934 2010217 ~ 2019150 (+)
LOC122346050 nutf2,LOC107726276,LOC107692933,LOC107733565 other upstream 721585 1900627 ~ 1905499 (+)
G32620 prrc2b,LOC107704672,LOC107562325 other upstream 784071 1835148 ~ 1843013 (+)
G32611 prrc2b,LOC107704672 other upstream 800970 1822654 ~ 1826114 (+)
tbx1 tbx1,LOC107755862,LOC107699917,LOC107708247 other downstream 679439 3328800 ~ 3343070 (+)
G33015 NA other downstream 955825 3605186 ~ 4144396 (+)
G33174 NA other downstream 1973146 4622507 ~ 4623060 (+)
fbrsl1 LOC107656817,LOC107600129 other downstream 1994740 4644101 ~ 4902403 (+)
G33355 kctd10,LOC107595924,LOC106564472,LOC107672630,LOC107597295,LOC107752136 other downstream 2954972 5604333 ~ 5649885 (+)

Expression


Co-expression Network