snrnp27 (snrnp27)


Basic Information

Item Value
gene id snrnp27
gene name snrnp27
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 2580548 ~ 2585452 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU48396
GTTTATGTGGCGCACAGTTGATGGCGGCCAGCAGACGTTTGTCTGTAAATTGTTGGTGAAGTATTGGTTTGTGAAGGTGCTGTTCGAAAGAAAAGCGTCTACTTCACAGCGATCCAGTCATGGGGAGAAGCAGGAGCCGAACACCGCCACGACGAGAGAGACGGCGCTCGCGCTCGACGTCACGGGAACGCGAGAGGAGGCGCCGGGAGCGCGAAAGATCCCGATCACGTgacagagacaggcggaggtcgcGCTCGCGCTCGCCTCACAGACGCAGATCCAGGTCTCCCCGCCGCCATCGCTCCTCCTCGCTGTCTCCGGGGCGGCAGAAAGACAGACGGGATGACGACCGGAAGGAAGCCAAGGACAAACCGGCAAAGGTTCATCAGATATCAGCTGAGGACATGCAGGGAAAGACTGAGGAGGAAATCGAGATGATGAAACAGATGGGCTTCGGGTCCTTCGACAGCACTAAGGGCAAGAAGAAGGAGGGCTCTGATGCTGCGTTCGAGGTGAACGTGTCGCAAAAGAGAAAATACAGGCAATACATGAACAGGAAAGGTGGTTTCAACAGACCTTTGGATTTCATTGCTTGACGGAGCCGTCAGGAAGAACGTCTGAGCGACTTTGACACCTTTGTGATTAAACGTATATTCCCTTTTCATCCCgagtttatgtaaatatgtttttccaTCTGTGTTGTGTTTCAGTCGGTGGCTGTTATGTAATGAGTGCAGTTTCTAGTAGCTCGTTTTAGAAGGGTTTGACATTGtggatttttcattttgaaaacttttatttgaaagCGCTGAATAAATGGGGACTCTTGA
>XM_043238136.1
CGTTGTTCCGGACCGGTTTATGTGGCGCACAGTTGATGGCGGCCAGCAGACGTTTGTCTGTAAATTGTTGGTGAAGTATTGGTTTGTGAAGGTGCTGTTCGAAAGAAAAGCGTCTACTTCACAGCGATCCAGTCATGGGGAGAAGCAGGAGCCGAACACCGCCACGACGAGGTTTGAAAACAGAGAGACGGCGCTCGCGCTCGACGTCACGGGAACGCGAGAGGAGGCGCCGGGAGCGCGAAAGATCCCGATCACGTgacagagacaggcggaggtcgcGCTCGCGCTCGCCTCACAGACGCAGATCCAGGTCTCCCCGCCGCCATCGCTCCTCCTCGCTGTCTCCGGGGCGGCAGAAAGACAGACGGGATGACGACCGGAAGGAAGCCAAGGACAAACCGGCAAAGGTTCATCAGATATCAGCTGAGGACATGCAGGGAAAGACTGAGGAGGAAATCGAGATGATGAAACAGATGGGCTTCGGGTCCTTCGACAGCACTAAGGGCAAGAAGAAGGAGGGCTCTGATGCTGCGTTCGAGGTGAACGTGTCGCAAAAGAGAAAATACAGGCAATACATGAACAGGAAAGGTGGTTTCAACAGACCTTTGGATTTCATTGCTTGACGGAGCCGTCAGGAAGAACGTCTGAGCGACTTTGACACCTTTGTGATTAAACGTATATTCCCTTTTCATCCCgagtttatgtaaatatgtttttccaTCTGTGTTGTGTTTCAGTCGGTGGCTGTTATGTAATGAGTGCAGTTTCTAGTAGCTCGTTTTAGAAGGGTTTGACATTGtggatttttcattttgaaaacttttatttgaaagCGCTGAATAAATGGGGACTCTTGA
>XM_043238137.1
TGTTCCGGACCGGTTTATGTGGCGCACAGTTGATGGCGGCCAGCAGACGTTTGTCTGTAAATTGTTGGTGAAGTATTGGTTTGTGAAGGTGCTGTTCGAAAGAAAAGCGTCTACTTCACAGCGATCCAGTCATGGGGAGAAGCAGGAGCCGAACACCGCCACGACGAGAGAGACGGCGCTCGCGCTCGACGTCACGGGAACGCGAGAGGAGGCGCCGGGAGCGCGAAAGATCCCGATCACGTgacagagacaggcggaggtcgcGCTCGCGCTCGCCTCACAGACGCAGATCCAGGTCTCCCCGCCGCCATCGCTCCTCCTCGCTGTCTCCGGGGCGGCAGAAAGACAGACGGGATGACGACCGGAAGGAAGCCAAGGACAAACCGGCAAAGGTTCATCAGATATCAGCTGAGGACATGCAGGGAAAGACTGAGGAGGAAATCGAGATGATGAAACAGATGGGCTTCGGGTCCTTCGACAGCACTAAGGGCAAGAAGAAGGAGGGCTCTGATGCTGCGTTCGAGGTGAACGTGTCGCAAAAGAGAAAATACAGGCAATACATGAACAGGAAAGGTGGTTTCAACAGACCTTTGGATTTCATTGCTTGACGGAGCCGTCAGGAAGAACGTCTGAGCGACTTTGACACCTTTGTGATTAAACGTATATTCCCTTTTCATCCCgagtttatgtaaatatgtttttccaTCTGTGTTGTGTTTCAGTCGGTGGCTGTTATGTAATGAGTGCAGTTTCTAGTAGCTCGTTTTAGAAGGGTTTGACATTGtggatttttcattttgaaaacttttatttgaaagCGCTGAATAAATGGGGACTCTTGA
>XM_043238138.1
CTTGATGACTTCGTTGTTCCGGACCGGTTTATGTGGCGCACAGTTGATGGCGGCCAGCAGACGTTTGTCTGTAAATTGTTGGTGAAGTATTGGTTTGTGAAGGTGCTGTTCGAAAGAAAAGCGTCTACTTCACAGCGATCCAGTCATGGGGAGAAGCAGGAGCCGAACACCGCCACGACGAGGTCTCCCCGCCGCCATCGCTCCTCCTCGCTGTCTCCGGGGCGGCAGAAAGACAGACGGGATGACGACCGGAAGGAAGCCAAGGACAAACCGGCAAAGGTTCATCAGATATCAGCTGAGGACATGCAGGGAAAGACTGAGGAGGAAATCGAGATGATGAAACAGATGGGCTTCGGGTCCTTCGACAGCACTAAGGGCAAGAAGAAGGAGGGCTCTGATGCTGCGTTCGAGGTGAACGTGTCGCAAAAGAGAAAATACAGGCAATACATGAACAGGAAAGGTGGTTTCAACAGACCTTTGGATTTCATTGCTTGACGGAGCCGTCAGGAAGAACGTCTGAGCGACTTTGACACCTTTGTGATTAAACGTATATTCCCTTTTCATCCCgagtttatgtaaatatgtttttccaTCTGTGTTGTGTTTCAGTCGGTGGCTGTTATGTAATGAGTGCAGTTTCTAGTAGCTCGTTTTAGAAGGGTTTGACATTGtggatttttcattttgaaaacttttatttgaaagCGCTGAATAAATGGGGACTCTTGA

Function

symbol description
snrnp27 Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Orthologous to human SNRNP27 (small nuclear ribonucleoprotein U4/U6.U5 subunit 27).

NR:

description
U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K12846 SNRNP27; U4/U6.U5 tri-snRNP-associated protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
TU48396 False 830 TUCP 0.51 6 2580548 2585426
XM_043238136.1 True 857 mRNA 0.51 6 2580548 2585441
XM_043238137.1 False 842 mRNA 0.51 6 2580548 2585438
XM_043238138.1 False 729 mRNA 0.48 5 2580548 2585452

Neighbor

gene id symbol gene type direction distance location
mxd1 mxd1,LOC107670395,LOC107708253 coding downstream 745 2555476 ~ 2579803 (-)
zgc:65851 zgc:65851,LOC107670379,LOC107708255,LOC107668750,LOC107599600,LOC107755851,LOC107573085 coding downstream 36974 2536025 ~ 2543574 (-)
purba LOC107737074,LOC107755849,LOC107668742,LOC107670383,LOC107599601,LOC108431741,LOC107580671 coding downstream 53211 2524559 ~ 2527337 (-)
LOC122346100 LOC107757959,LOC107587426,LOC107709681,LOC107681216,LOC107560221,LOC107560220 coding downstream 162495 2385151 ~ 2418053 (-)
LOC122345768 LOC107562125,LOC107690349,LOC107554462,LOC107715242 coding downstream 481367 2090152 ~ 2099181 (-)
LOC122345702 figla coding upstream 21762 2607214 ~ 2609585 (-)
tet3 LOC107654213,LOC107708251,LOC107557386,LOC107697244,LOC107551814,LOC107755856 coding upstream 238719 2824171 ~ 2866043 (-)
ap3m2 ap3m2,LOC107755857,LOC107551816 coding upstream 280713 2866165 ~ 2874893 (-)
kat6a kat6a,LOC107708249,LOC107697242,LOC107755858,LOC107699914,LOC107551817 coding upstream 290857 2876309 ~ 2910382 (-)
LOC122345463 sema4c,LOC107699920,LOC107697240 coding upstream 437397 3022849 ~ 3089522 (-)
LOC122346060 cacna1ba,LOC107560222,LOC107587427,LOC107709695 non-coding downstream 144848 2433286 ~ 2435700 (-)
G32740 cacna1ba,LOC107709695,LOC107757972,LOC107587427,LOC107681248,LOC107560222,LOC107690670 non-coding downstream 155736 2422985 ~ 2424812 (-)
LOC122344845 LOC107709689,LOC107560224,LOC107681222 non-coding downstream 195847 2383907 ~ 2384701 (-)
LOC122344860 LOC107560224,LOC107690695,LOC107757958,LOC107681222,LOC107709689,LOC107587469 non-coding downstream 201153 2377967 ~ 2379395 (-)
G32727 LOC107681241 non-coding downstream 204885 2374002 ~ 2375663 (-)
G32870 NA non-coding upstream 66992 2652444 ~ 2728807 (-)
G32881 NA non-coding upstream 164507 2749959 ~ 2797599 (-)
G32882 NA non-coding upstream 179831 2765283 ~ 2766771 (-)
G32883 NA non-coding upstream 182327 2767779 ~ 2774190 (-)
G32884 NA non-coding upstream 183749 2769201 ~ 2770371 (-)
G32857 NA other downstream 26402 2496504 ~ 2554146 (-)
LOC122344636 pex11a,LOC107556261,LOC107714788,LOC107690406,LOC107691149,LOC107715221,LOC107551461 other downstream 557626 2020096 ~ 2022922 (-)
G32676 NA other downstream 612800 1966637 ~ 1967748 (-)
ypel1 ypel1,YPEL1,ypelc,ypel2b,LOC103374080,LOC106586007 other downstream 886262 1673024 ~ 1694286 (-)
lrrc74b lrrc74b,LOC107755819,LOC107667596,LOC107599620 other downstream 1226134 1342606 ~ 1354414 (-)
add2 add2,LOC107668755 other upstream 1135 2586587 ~ 2605917 (-)
LOC122344624 LOC107699921,LOC107708239,LOC107755860,LOC107697241,LOC107551809 other upstream 350291 2935743 ~ 3012819 (-)
G32908 sema4c,LOC107697240,LOC107708238,LOC107699920 other upstream 366010 2951462 ~ 2960177 (-)
coq5 coq5,LOC107560969,LOC107707852,LOC107656810,LOC107561264,LOC107702223,LOC107707851,LOC107560965,LOC101158254,LOC107755815,LOC107561265 other upstream 1159223 3744675 ~ 3752764 (-)
piwil2 piwil2,LOC107560971,LOC107707823,LOC107702219 other upstream 1293198 3878650 ~ 3898578 (-)

Expression


Co-expression Network