G32908 (sema4c,LOC107697240,LOC107708238,LOC107699920)


Basic Information

Item Value
gene id G32908
gene name sema4c,LOC107697240,LOC107708238,LOC107699920
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 2951462 ~ 2960177 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU48464
gggggGACGTGGACGTGTCTGCGGTGTGTCAGTACCAGATCGGAGAGGTGAAAAACGTGTTCGACGGGCCGTATAAGGAGTACAGGGAGTCGTCTCAGCGCTGGGGCCGATTCACTGGCACCGTTCCCAGCCCTCGACCCGGAGCGTGCATCACGAACTTTGACCGAGAGAACGGCTACAACAGTTCTCTGCAGCTGCCCGACGCCACGCTGAACTTTGCCAAGAAGCATCCGCTGATGGAGGACCGGGCCGAAGCTCGCCCCCTGCTGCTCACGAAAGGCATCAACTTCACCCGACTAGCAGTGGACAGAGTGAGCTCGCTGGACCAGAGACCCTACAACATGCTCTTCATAGGCACAGCGGATGGATGGCTCCAGCGTGTGGTGATTCTGGGTTCAGAAGCTCATGTGATAGAAGAGATCCAGCTGTTTGATCGGCAGCAGCCGGTGGACAGCCTCACCATCTCACACGGCAAAAAGTATTTGTACATTGGCTCGCGCTCCGAGGTTCTTCAGCTGCCCTTGGCAAACTGCAGCCGCTACCATTCACAGCCAGACTGCCTTCTGTCCCGAGATCCATACTGCGCCTGGGACAGCGAGGGACGCGCTTGTGTCCGCATCGACCTCCACCGCGGCTCCACATCCACGCTCTCACAGGACCTCATGCTGGAGAGGTTCAGCCGAGGAAAAGCCAAGTTTGATAAGCCTTTCTCCATCCCCAGTCCAGatcATTCTAGGTTGCGAAATGTGACTGTGGTTGTTGGGTCAGATCTGGTTTTGCCCTGCCATCTGGTTTCCAACTTGGCCCAGCCTTTCTGGGAGCTCAACGAACGTGAGCTGGCCCTGGTGGAAGGCGGAGCCCGGGGCCCCGGTCGACCGAGCCCTCCGCGCCCTCGTCATCCC

Function

symbol description
sema4c Predicted to enable chemorepellent activity and semaphorin receptor binding activity. Predicted to be involved in several processes, including generation of neurons; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane. Is expressed in several structures, including axial mesoderm; brain; lens placode; olfactory epithelium; and solid lens vesicle. Orthologous to human SEMA4C (semaphorin 4C).

NR:

description
PREDICTED: semaphorin-4C-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48464 True 902 TUCP 0.59 6 2951462 2960177

Neighbor

gene id symbol gene type direction distance location
kat6a kat6a,LOC107708249,LOC107697242,LOC107755858,LOC107699914,LOC107551817 coding downstream 41080 2876309 ~ 2910382 (-)
ap3m2 ap3m2,LOC107755857,LOC107551816 coding downstream 76569 2866165 ~ 2874893 (-)
tet3 LOC107654213,LOC107708251,LOC107557386,LOC107697244,LOC107551814,LOC107755856 coding downstream 85419 2824171 ~ 2866043 (-)
LOC122345702 figla coding downstream 341877 2607214 ~ 2609585 (-)
mxd1 mxd1,LOC107670395,LOC107708253 coding downstream 371659 2555476 ~ 2579803 (-)
LOC122345463 sema4c,LOC107699920,LOC107697240 coding upstream 62672 3022849 ~ 3089522 (-)
gnb1l gnb1l,LOC107708243,LOC107755863,LOC107551810 coding upstream 383382 3343559 ~ 3376526 (-)
txnrd2.2 txnrd2 coding upstream 430817 3390994 ~ 3417741 (-)
taok3a taok3,taok3a,LOC107699916,LOC107697236,LOC107708246 coding upstream 462707 3422884 ~ 3494193 (-)
si:dkey-1k23.3 LOC107560961,LOC107656799,LOC107702214,LOC107755870 coding upstream 659001 3619178 ~ 3622404 (-)
LOC122346059 NA non-coding downstream 1130 2948484 ~ 2950332 (-)
G32906 NA non-coding downstream 14524 2936481 ~ 2936938 (-)
G32881 NA non-coding downstream 153863 2749959 ~ 2797599 (-)
G32883 NA non-coding downstream 177272 2767779 ~ 2774190 (-)
G32884 NA non-coding downstream 181091 2769201 ~ 2770371 (-)
G32910 NA non-coding upstream 22590 2982767 ~ 2984983 (-)
G32914 NA non-coding upstream 120730 3080907 ~ 3120371 (-)
G32922 NA non-coding upstream 215542 3175719 ~ 3176249 (-)
G32999 NA non-coding upstream 333429 3293606 ~ 3327241 (-)
G32998 NA non-coding upstream 380422 3340599 ~ 3343240 (-)
add2 add2,LOC107668755 other downstream 345545 2586587 ~ 2605917 (-)
snrnp27 snrnp27 other downstream 366010 2580548 ~ 2585452 (-)
G32857 NA other downstream 397316 2496504 ~ 2554146 (-)
LOC122344636 pex11a,LOC107556261,LOC107714788,LOC107690406,LOC107691149,LOC107715221,LOC107551461 other downstream 928540 2020096 ~ 2022922 (-)
G32676 NA other downstream 983714 1966637 ~ 1967748 (-)
coq5 coq5,LOC107560969,LOC107707852,LOC107656810,LOC107561264,LOC107702223,LOC107707851,LOC107560965,LOC101158254,LOC107755815,LOC107561265 other upstream 784498 3744675 ~ 3752764 (-)
piwil2 piwil2,LOC107560971,LOC107707823,LOC107702219 other upstream 918473 3878650 ~ 3898578 (-)
LOC122346168 srrm4,LOC107720865,LOC107702227,LOC107561260,LOC107656798 other upstream 1184679 4144856 ~ 4193081 (-)
G33175 NA other upstream 1662313 4622490 ~ 4623058 (-)
G33758 LOC107596916,LOC107710760,LOC107700938,LOC107587412,LOC107693817 other upstream 3863994 6824171 ~ 6826182 (-)

Expression


Co-expression Network