piwil2 (piwil2,LOC107560971,LOC107707823,LOC107702219)


Basic Information

Item Value
gene id piwil2
gene name piwil2,LOC107560971,LOC107707823,LOC107702219
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 3878650 ~ 3898578 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU48804
TCCTTCCAGTCCGCTGCCCCCGTCTCTGAAGAAGCACCGGTTCCTCCAGGAACGCCTCCGAAAGTTGAAGTGAAAATTGAGACAGTGAAGGAGCCTCTGCAGAAAACCGGAACAAAAGGCAGTCCTGTATCCATCGGGTCAAACTACATCCCCATCTGCTGCAAAAATGAAGCTGTGTTTCAGTACCATGTTACTTTCACGCCGAACATTGAGTCTCTGAGTATGCGCCGGTATGATGAAGGAGCACCGGTCTGACGGGGGAGGTGGTGGCCTTTGATGGATCCATCCTCTATCTGCCGAAACGTCTTGAAGAGGTTGTTCATCTTAAAGCCGAGAGGAAAACCGACAATCAAGAGATCGACATTAAGATCCAGCTGACGAAGATTCTGCCGCCCAGCTCTGATCTGTGCATCCCGTTCTACAACGTGGTCCTAAGGAGAGTGATGAAATTACTGGGGCTGAAGCTGGTGGGCAGAAACCATTACGACCCCAACGCCGTTGTGATTCTCGGCAAACACAGGCTTCAGGTGTGGCCTGGATACTCCACCAGCATCAAGCACACCGATGGAGGCCTCTACCTCGTCGTGGACGTCTCGCATAAGGTGCTGCGAAACGACTCGGTGCTCGATGTCATGAATCTGATTTACCAGGGAAGCCGTGAGAGCTTTCAGGACGAGTGCACGAAGGAGTTTGTGGGCTCGATCGTCATCACGCGCTATAACAACCGCACTTACCGTATCGACGACATCGAGTGGTCCAAGTCTCCCAAAGACACCTTCACCTTGGCTGATGGGACCGTCACCACGTTTGTGGATTACTACAGGAAGAACTATGGCATCGCCGTAAAGGAGCTGGACCAACCGCTGCTCATCCATCGTCCCAAAGAGAGGTCCAGACCTGGAGGAAAGGTCATGACGGGTGAAATCCTGCTGCTCCCGGAGCTCTCCTTCATGACCGGCATCCCCGAGAAGATGAGGAAGGACTTCAGAGCCATGAGGGTACAAATCAGCGAC
>TU48805
TCCTTCCAGTCCGCTGCCCCCGTCTCTGAAGAAGCACCGGTTCCTCCAGGAACGCCTCCGAAAGTTGAAGTGAAAATTGAGACAGTGAAGGAGCCTCTGCAGAAAACCGGAACAAAAGGCAGTCCTGTATCCATCGGGTCAAACTACATCCCCATCTGCTGCAAAAATGAAGCTGTGTTTCAGTACCATGTTACTTTCACGCCGAACATTGAGTCTCTGAGTATGCGCCGGTATGATGAAGGAGCACCGGTCTGACGGGGGAGGTGGTGGCCTTTGATGGATCCATCCTCTATCTGCCGAAACGTCTTGAAGAGGTTGTTCATCTTAAAGCCGAGAGGAAAACCGACAATCAAGAGATCGACATTAAGATCCAGCTGACGAAGATTCTGCCGCCCAGCTCTGATCTGTGCATCCCGTTCTACAACGTGGTCCTAAGGAGAGTGATGAAATTACTGGGGCTGAAGCTGGTGGGCAGAAACCATTACGACCCCAACGCCGTTGTGATTCTCGGCAAACACAGGCTTCAGGTGTGGCCTGGATACTCCACCAGCATCAAGCACACCGATGGAGGCCTCTACCTCGTCGTGGACGTCTCGCATAAGGTGCTGCGAAACGACTCGGTGCTCGATGTCATGAATCTGATTTACCAGGGAAGCCGTGAGAGCTTTCAGGACGAGTGCACGAAGGAGTTTGTGGGCTCGATCGTCATCACGCGCTATAACAACCGCACTTACCGTATCGACGACATCGAGTGGTCCAAGTCTCCCAAAGACACCTTCACCTTGGCTGATGGGACCGTCACCACGTTTGTGGATTACTACAGGAAGAACTATGGCATCGCCGTAAAGGAGCTGGACCAACCGCTGCTCATCCATCGTCCCAAAGAGAGGTCCAGACCTGGAGGAAAGGTCATGACGGGTGAAATCCTGCTGCTCCCGGAGCTCTCCTTCATGACCGGCATCCCCGAGAAGATGAGGAAGGACTTCAGAGCCATGAGGGATCTGGCTGTGCACATC
>XM_043240840.1
ATGCCGTGGATGCCGTCTGCAGGAGATCAGGGCCGTCGCCCGACCAGCCCTCATTGGGACGAGCCAGAGGTCTGGTTCTGCCTAAAGATGAACCTCTTCCCGGACAGTAGAGTACCTGGAGAAGTGCCTGTACGAGGTGTGCGATTACCGACGGACGCCGGAGGTTTCGGAAGAGCCCGAGGGTTTCTGCTGCCCGGTTTTGGGATGGGCAGAGGGGGCTCCTGTGGGGCCTGTGCCTCGCCGGACATCAAAAAAGCAGGCGTCGCACGGGAGAAGAGGCCTGTGCTGCAAACAGAGtTTCCTGGCAGAGGATTTGTTGGCGTAGGCGAGCCGTTGCCTCATATAGGGGTAGTTCTCCCGGTGCGGCCCAGGTCGTCCTTCCAGTCCGCTGCCCCCGTCTCTGAAGAAGCACCGGTTCCTCCAGGAACGCCTCCGAAAGTTGAAGTGAAAATTGAGACAGAGCCTCTGCAGAAAACCGGAACAAAAGGCAGTCCTGTATCCATCGGGTCAAACTACATCCCCATCTGCTGCAAAAATGAAGCTGTGTTTCAGTACCATGTTACTTTCACGAGCACCGGTCTGACGGGGGAGGTGGTGGCCTTTGATGGATCCATCCTCTATCTGCCGAAACGTCTTGAAGAGGTTGTTCATCTTAAAGCCGAGAGGAAAACCGACAATCAAGAGATCGACATTAAGATCCAGCTGACGAAGATTCTGCCGCCCAGCTCTGATCTGTGCATCCCGTTCTACAACGTGGTCCTAAGGAGAGTGATGAAATTACTGGGGCTGAAGCTGGTGGGCAGAAACCATTACGACCCCAACGCCGTTGTGATTCTCGGCAAACACAGGCTTCAGGTGTGGCCTGGATACTCCACCAGCATCAAGCACACCGATGGAGGCCTCTACCTCGTCGTGGACGTCTCGCATAAGGTGCTGCGAAACGACTCGGTGCTCGATGTCATGAATCTGATTTACCAGGGAAGCCGTGAGAGCTTTCAGGACGAGTGCACGAAGGAGTTTGTGGGCTCGATCGTCATCACGCGCTATAACAACCGCACTTACCGTATCGACGACATCGAGTGGTCCAAGTCTCCCAAAGACACCTTCACCTTGGCTGATGGGACCGTCACCACGTTTGTGGATTACTACAGGAAGAACTATGGCATCGCCGTAAAGGAGCTGGACCAACCGCTGCTCATCCATCGTCCCAAAGAGAGGTCCAGACCTGGAGGAAAGGTCATGACGGGTGAAATCCTGCTGCTCCCGGAGCTCTCCTTCATGACCGGCATCCCCGAGAAGATGAGGAAGGACTTCAGAGCCATGAGGGTACAAATCAGCGACAGGGTCGGGATCTGGCTGTGCACATCGGCGTCAGCCGAGCAGATTCTAGTGACTCAAGGAAGAACTCTGCCCAACGAGACCATCTGCTTGCATTCAGCTTCTTTTGTGACGTCTCCGGCGGTAGACTGGTCCAGAGAGGTGGTTCGAGACCCCTCTATCAGCACCGTTCCTCTGAACTGCTGGGCTGTTTTCTATCCCCGGCGGGCGACCGATCAGGCAGAGGAGCTGGTGACTACTTTTACTAAGGTGGCCGGACCAATGGGCATCAAAATTGAGCGGCCCATCCGCGTGGAGCTACGGGACGATCGAACAGAGACCTTCATCAAGAGCATTCACTCTCAACTCACCAGCGAGCCCCGTGTGCAGCTGGTCGTGTGCATTATGACCGGAAACAGAGACGACCTGTACAGCGCCATCAAGAAGCTCTGCTGCATCCAGAGTCCTGTACCTTCACAGGCCATCAACGTTCGGACCATCTCTCAGCCACAGAAGCTCCGCAGCATCGCTCAGAAGATCCTTCTGCAGATTAACTGCAAGCTGGGAGGAGAGCTGTGGACGGTGAACGTTCCTCTGAAATATCTGATGGTGATTGGGGTGGATGTTCACCATGATGTAAGCAAGAAAAGCAGATCTGTCATGGGCTTTGTGGCAAGTCTCAACAGCATGCTGACCAAGTGGTACTCCAGGGTTACCTTCCAGATGCCTCACGAGGAGATAATCAACGGCTTCAGGGTCTGTCTGCTGGCGGCCCTGCAGAAATACTACGAGGTATTTCTATCAACTGGTCAATCGATTCGGTTAAAAGCCACAGGGCGCGTTTCAGCCATTTCTCGCCGACAGGTGAACCACACCTTCCCCGAGAAGATCGTCATCTATCGCGACGGCGTGTCTGACGGACAGCTCAAGACGGTGGAGCTTTACGAGATCCCTCAGGTCCTGAAGTGCTTCGAGACCATCCCGAACTACGATCCGAAGCTGGCTTTCATCGTGGTGCAGAAGAGGATCAGCACCACCCTGTACTCCTGCGGATCTGACCAGTTCGGCACGCCCTCGCCGGGAACCGTCCTGGACCACACCGTCACCAACAGAGACTGGTCGGTGTCCAAGAGCCGGCTTCAGAGCGACTGA

Function

symbol description
piwil2 Enables piRNA binding activity. Involved in several processes, including gamete generation; germ-line stem cell population maintenance; and piRNA metabolic process. Acts upstream of or within negative regulation of SMAD protein complex assembly and positive regulation of gene expression. Located in P granule and nucleus. Is expressed in axis; blastoderm; blastodisc; pharyngeal arch 3-7; and reproductive system. Orthologous to human PIWIL2 (piwi like RNA-mediated gene silencing 2).

NR:

description
piwi-like protein 2

GO:

id name namespace
GO:0048477 oogenesis biological_process
GO:0010628 positive regulation of gene expression biological_process
GO:0030718 germ-line stem cell population maintenance biological_process
GO:0043046 DNA methylation involved in gamete generation biological_process
GO:0007275 multicellular organism development biological_process
GO:0006417 regulation of translation biological_process
GO:0031047 gene silencing by RNA biological_process
GO:0000966 RNA 5'-end processing biological_process
GO:0010991 negative regulation of SMAD protein complex assembly biological_process
GO:0034587 piRNA metabolic process biological_process
GO:0071546 pi-body cellular_component
GO:0005634 nucleus cellular_component
GO:0005515 protein binding molecular_function
GO:0034584 piRNA binding molecular_function

KEGG:

id description
K02156 AUB, PIWI; aubergine

RNA

RNA id representative length rna type GC content exon number start site end site
TU48804 False 1013 TUCP 0.53 9 3885550 3894475
TU48805 False 1016 TUCP 0.53 10 3885425 3894475
XM_043240840.1 True 2469 mRNA 0.55 18 3878650 3898578

Neighbor

gene id symbol gene type direction distance location
slc39a14 slc39a14,LOC107656812,LOC107560970,LOC107561269,LOC107702220,LOC107707824 coding downstream 4761 3849493 ~ 3873889 (-)
susd2 LOC107656804,LOC107561267,LOC107702221,LOC107707826,LOC107560963 coding downstream 31480 3822118 ~ 3847170 (-)
kremen1 kremen1,LOC107656811,LOC107561268,LOC107560966,LOC107702222 coding downstream 68954 3753979 ~ 3809696 (-)
xbp1 xbp1 coding downstream 215740 3659704 ~ 3662910 (-)
si:dkey-1k23.3 LOC107560961,LOC107656799,LOC107702214,LOC107755870 coding downstream 256246 3619178 ~ 3622404 (-)
LOC122345410 hspb8,LOC107720866,LOC107561261 coding upstream 238953 4137531 ~ 4141903 (-)
LOC122345409 htr7c,LOC107561270,LOC107707833,LOC107656814,LOC107560967,LOC102292089 coding upstream 389221 4287799 ~ 4319735 (-)
LOC122346182 NA coding upstream 451649 4350227 ~ 4370478 (-)
atad1a atad1a,LOC107702218,LOC107561272,LOC107656802,LOC107719316,LOC103469725 coding upstream 558241 4456819 ~ 4462417 (-)
galnt9 galnt9,LOC107600134,LOC107702212,LOC107719314,LOC103023100,LOC107570788,LOC108412666 coding upstream 589263 4487841 ~ 4557844 (-)
G33124 NA non-coding downstream 225762 3648466 ~ 3652888 (-)
G33114 NA non-coding downstream 259596 3617937 ~ 3619054 (-)
G33008 NA non-coding downstream 488271 3388284 ~ 3390379 (-)
G32998 NA non-coding downstream 535410 3340599 ~ 3343240 (-)
G32999 NA non-coding downstream 551409 3293606 ~ 3327241 (-)
G33140 htr7c,LOC107755817,LOC107707833,LOC107656814,LOC107561270,LOC107702213,LOC107560967 non-coding upstream 13 3898591 ~ 3904546 (-)
LOC122345413 NA non-coding upstream 69278 3967856 ~ 3968964 (-)
LOC122345411 NA non-coding upstream 152204 4050782 ~ 4051472 (-)
G33300 NA non-coding upstream 961421 4859999 ~ 4902402 (-)
G33310 NA non-coding upstream 1015303 4913881 ~ 4915751 (-)
coq5 coq5,LOC107560969,LOC107707852,LOC107656810,LOC107561264,LOC107702223,LOC107707851,LOC107560965,LOC101158254,LOC107755815,LOC107561265 other downstream 125886 3744675 ~ 3752764 (-)
LOC122344624 LOC107699921,LOC107708239,LOC107755860,LOC107697241,LOC107551809 other downstream 865831 2935743 ~ 3012819 (-)
G32908 sema4c,LOC107697240,LOC107708238,LOC107699920 other downstream 918473 2951462 ~ 2960177 (-)
add2 add2,LOC107668755 other downstream 1272733 2586587 ~ 2605917 (-)
snrnp27 snrnp27 other downstream 1293198 2580548 ~ 2585452 (-)
LOC122346168 srrm4,LOC107720865,LOC107702227,LOC107561260,LOC107656798 other upstream 246278 4144856 ~ 4193081 (-)
G33175 NA other upstream 723912 4622490 ~ 4623058 (-)
G33758 LOC107596916,LOC107710760,LOC107700938,LOC107587412,LOC107693817 other upstream 2925593 6824171 ~ 6826182 (-)
usp20 usp20,LOC107691016,LOC107693839,LOC107710745 other upstream 3024268 6922846 ~ 6943203 (-)
G33998 LOC108444092 other upstream 3483768 7382346 ~ 7397153 (-)

Expression


Co-expression Network