G33140 (htr7c,LOC107755817,LOC107707833,LOC107656814,LOC107561270,LOC107702213,LOC107560967)


Basic Information

Item Value
gene id G33140
gene name htr7c,LOC107755817,LOC107707833,LOC107656814,LOC107561270,LOC107702213,LOC107560967
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 3898591 ~ 3904546 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU48808
TCACGCACAGCGTCATGATGGAGGCAGTGCAGCACATCACATCCATGCCGATGAAGATGTTACAGAAGACCTCTCCAAAAAGCCACTTTCCTCCCGTGAGGTCCGTCACGATCACGAAAGGCATGACCACGATAGCCACGGAGAGGTCCGCCACGGCCAGAGACACCAGCAGATAGTTGGACGGCTGTCTGAGCTTCTTCACGACGCACACCGCGATCACCACCAGCATATTTCCAATCACCGTCACGGTGGTGATGACGGCCAGCATCATTCCGATGACAATCTTCTCCGCCGTGGTGAAATCGAGCAACTGTTCCCCGCAGGATTTGTTCCACATGGCCATCGAGATGTTGTAGAACAAGTGTGAGGAACCATTGAGAACTTCCGCCGCCGCCTCGGGGTGAGCGAACGAGAGGAAATCCGCCGAGCCCGACGAGTTGAACATCATCCCTGCGCCCGACGACGAAGAGCTCGCCAGGAGTGCGCTCCGTGCGCCAAACGCATGCTGAGGCGAGCGCGGCTCTGGGGGTGTCTTCGGGCTTTCCGGCGGCGAGTTGCGCGCGGATGCGGCGGAGAAAACTTGAAGAAACGGGGAGGAAGTGGGGGGGCGATCGCCACGGTTTGGCCGCacggcgcgcgcgcgcgtggaGAAGCTGGTCCTCGGGTGGCTGGAAGTGACGGTTCGGTTCTTCATGCGAGGAAGTGTGTGAGAATTGCGCACTCTAttgcATTGAAGTGCAGCGGAGGAAGAAATGGATCCGAAGCGACCCCCTTTCCGGGGCCCC

Function

symbol description
htr7c Predicted to enable G protein-coupled serotonin receptor activity and neurotransmitter receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger and chemical synaptic transmission. Predicted to act upstream of or within several processes, including circadian rhythm; smooth muscle contraction; and vasoconstriction. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in alcohol use disorder. Orthologous to human HTR7 (5-hydroxytryptamine receptor 7).

NR:

description
PREDICTED: 5-hydroxytryptamine receptor 7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48808 True 785 lncRNA 0.60 2 3898591 3904546

Neighbor

gene id symbol gene type direction distance location
slc39a14 slc39a14,LOC107656812,LOC107560970,LOC107561269,LOC107702220,LOC107707824 coding downstream 24702 3849493 ~ 3873889 (-)
susd2 LOC107656804,LOC107561267,LOC107702221,LOC107707826,LOC107560963 coding downstream 51421 3822118 ~ 3847170 (-)
kremen1 kremen1,LOC107656811,LOC107561268,LOC107560966,LOC107702222 coding downstream 88895 3753979 ~ 3809696 (-)
xbp1 xbp1 coding downstream 235681 3659704 ~ 3662910 (-)
si:dkey-1k23.3 LOC107560961,LOC107656799,LOC107702214,LOC107755870 coding downstream 276187 3619178 ~ 3622404 (-)
LOC122345410 hspb8,LOC107720866,LOC107561261 coding upstream 232985 4137531 ~ 4141903 (-)
LOC122345409 htr7c,LOC107561270,LOC107707833,LOC107656814,LOC107560967,LOC102292089 coding upstream 383253 4287799 ~ 4319735 (-)
LOC122346182 NA coding upstream 445681 4350227 ~ 4370478 (-)
atad1a atad1a,LOC107702218,LOC107561272,LOC107656802,LOC107719316,LOC103469725 coding upstream 552273 4456819 ~ 4462417 (-)
galnt9 galnt9,LOC107600134,LOC107702212,LOC107719314,LOC103023100,LOC107570788,LOC108412666 coding upstream 583295 4487841 ~ 4557844 (-)
G33124 NA non-coding downstream 245703 3648466 ~ 3652888 (-)
G33114 NA non-coding downstream 279537 3617937 ~ 3619054 (-)
G33008 NA non-coding downstream 508212 3388284 ~ 3390379 (-)
G32998 NA non-coding downstream 555351 3340599 ~ 3343240 (-)
G32999 NA non-coding downstream 571350 3293606 ~ 3327241 (-)
LOC122345413 NA non-coding upstream 63310 3967856 ~ 3968964 (-)
LOC122345411 NA non-coding upstream 146236 4050782 ~ 4051472 (-)
G33300 NA non-coding upstream 955453 4859999 ~ 4902402 (-)
G33310 NA non-coding upstream 1009335 4913881 ~ 4915751 (-)
G33330 NA non-coding upstream 1120399 5024945 ~ 5027815 (-)
piwil2 piwil2,LOC107560971,LOC107707823,LOC107702219 other downstream 13 3878650 ~ 3898578 (-)
coq5 coq5,LOC107560969,LOC107707852,LOC107656810,LOC107561264,LOC107702223,LOC107707851,LOC107560965,LOC101158254,LOC107755815,LOC107561265 other downstream 145827 3744675 ~ 3752764 (-)
LOC122344624 LOC107699921,LOC107708239,LOC107755860,LOC107697241,LOC107551809 other downstream 885772 2935743 ~ 3012819 (-)
G32908 sema4c,LOC107697240,LOC107708238,LOC107699920 other downstream 938414 2951462 ~ 2960177 (-)
add2 add2,LOC107668755 other downstream 1292674 2586587 ~ 2605917 (-)
LOC122346168 srrm4,LOC107720865,LOC107702227,LOC107561260,LOC107656798 other upstream 240310 4144856 ~ 4193081 (-)
G33175 NA other upstream 717944 4622490 ~ 4623058 (-)
G33758 LOC107596916,LOC107710760,LOC107700938,LOC107587412,LOC107693817 other upstream 2919625 6824171 ~ 6826182 (-)
usp20 usp20,LOC107691016,LOC107693839,LOC107710745 other upstream 3018300 6922846 ~ 6943203 (-)
G33998 LOC108444092 other upstream 3477800 7382346 ~ 7397153 (-)

Expression


Co-expression Network