LOC122344984 (LOC107597340,LOC107752133,LOC107684988,LOC107672606)


Basic Information

Item Value
gene id LOC122344984
gene name LOC107597340,LOC107752133,LOC107684988,LOC107672606
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 5574164 ~ 5597629 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU49160
ATTTTTTACACCTCTACCAGGAGTGAGGTTAACTTAAGTACTTAActtaaacacacaacaaaaaaaactaatcacaTACCTCTCTTCTGCAACAGATCTATAGAGATGGATTTGTCAGTATTGGCGTCAGGAGACAAGCAAAATTCTTCCGGGGGGCGCTCCGTCTGAGAGAAGTAATCAGGTAGGAAGTCGCTGTAACACTGCGGCAGTTGCCTTAATGACTGACCTGTAAACGAAAAATCACTCAgataaatgcaaacatatacAAACCCAGACACCGTGCTAGACAAAAGAAGAAGGTGACAGACAAAAGATAAGGTCATAATCACAAGTGTCTAATAGCTACATTCACTAACTACATACAAAATGACCCCACCCCAGCCCTCTTTCCGGCTCATTCCCTTCAACCCTCGTTGAGTGTTAGAAATTGGTTCAGCACCATTCAGTCTGCCGAAGCCGATTGGTTGATTGGTCGGAGGGAAATCAAACACATTGCGTCGCATGACACGAGTTCCAGGTCTCTTGGTTTCCAAAGCGCAAGAGAAAGAATGAGGGCCGTCTTTACCACGCTCCACACCCAGAGGGTTCTTGCGCCTGTACTCTCTCCATTTCAGTGCCTGTGGGGAGAGGTGGGTGCACCTTGGAGGCGAACTGGGGAGTAGCTGCCCAGTGGGGATGGCCGTACTGTTGTAGGTGCGTTGGAGGTGCCGTGTGGTGGCCTGCAATCTTCTTCTGAGTCATCTTCTCCTCCCTCAGGCGCCACAGCCCCTCGAGTCTGCATATGGCTGATGTATCCGTccagaagaggaagaagaggctTTGCCTGTGGTTTTCCGTATTGGTGCTGGAAAGTGAAAGGCTGAATGGGTAATGAGGTCGGACGTTGATCTTTGCTATAGCGAATTACAACCGGAGAGGAGTCTGTGGAGCTAGATAGGCC
>XR_006250957.1
CGTTGGTTCTAAAAGAAGTCCACCCAAGTAGGTGACTTGTTGAAAAGGACAACGACGTTCCACAGATTGCACACAAAGAGCAAGAGACCACATCAAAACATCTCGTCCCAACACACGCCTAAATATAATATCTATAGAGATGGATTTGTCAGTATTGGCGTCAGGAGACAAGCAAAATTCTTCCGGGGGGCGCTCCGTCTGAGAGAAGTAATCAGATATGAGCCATATAACAGCAAGAGATGCTCAGCAAATATCACCTGTCAGTGAGAACCCTCACGGAACCCGTCCTCCTGCTGTCTGGCCAGATTAAACTCCATTACGTAACACTCGTGTGTTTCTGCCAGCCTGTGTGTGTTCAAGAAAATATATTCCGTACCGCAccgctttaaaatatattcttttcaaatttttgcaaaactattttcaaaagaaattctaaaacaaatatattgtgtgtaaaaTTTGTCACAAAATGCATGCGATTAATTTTATcgtgttttattcattcaagtAGCTTTATGAAAATGGTTTTTAACCTCGATCTtccaaaaaaatgacatactGGTTATGTGAGATGAACTACTCAATTTATTGAGTCCACTAATTTACAGAAAACTCATTCAACCTGTCTGAAAACCGGCCTTAAATTAGTCCACACAGTCTGAAGCATCTATTTCCAGTAATTCATGAGTCAGTTTAGCCTGACTTCATCTAATCGGTCACACGCTACTGAGACATACTGTAGGGACCAACTAGTGATAGACTGTTGGACTGACCAGGGCAGCTATTGGCCGGCATTTGACTGAAATTATTAGCACCAGTCAAGCTACTGTAAATCACAACATCCTCGTCTGTTGCTGtagttaaaccaaaaaaaagaaaatggacaGAGAGGCTGGTTAAGGGggcagaaaatgctttttctctccctctttcatGTCTCATTGTTACATAACTACAGGCCATGACGGCCACTGCATTCCACAGACTGGGCGTTTAGCTAAGATCAGACGGACAGCTGCAGACCGACGACAAGAAGGCGGCATGATTCTCACACATGCACGGCAAAAAGCACTCAAACAGGCCTTGCTTGCGTTATTTATTAAGCAGGTAAACTGCGGTAAATTTAGAATATAATTCCAACTGAACTTTTTAGTATGACATATTAGATGTTGTTATGCTAATTTATATAGGCCTACTAAATTATTGACCTTCATTCTTTTTACAGTTGAACACGAGACCGAACAAAGCCTACTTGAAGTTGCAGAAAGTGATTTGAATTACAGGCCGTGTTGACAAAAATACCGTAATTTgataaaatactttaaagatTGATGGCACTTTCAAACAGCCATTCTGGCTACCTGAAGTAAGATAACAATCGCCTGTaaatctaaaaagaaagaaaaaaaacatgtcacattttgaaaatgatgagTATACTCTCTCTGAATAGACTTCTATAGATAAACGGGGTATATTGGTTTCCATAATGAGTTTTCCCAGTGTGACTcatggttgaaaaaaaaaaaaaaaatcaatgacgGCCAAAGCACTAAACACACAAGTTTGCACAGACACAAAATTGAACTTACAAAACCAGATTAGTAATAAACCGGTGTgggtgaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49160 False 940 lncRNA 0.49 2 5582143 5584600
XR_006250957.1 True 1630 lncRNA 0.39 3 5574164 5597629

Neighbor

gene id symbol gene type direction distance location
LOC122345133 LOC107752131,LOC107684984,LOC107595918,LOC107672624,LOC107741247 coding downstream 119408 5435977 ~ 5454756 (-)
ranbp1 ranbp1,LOC107684983,LOC107752129,LOC107597301,LOC107672632,LOC107741249 coding downstream 139033 5430566 ~ 5435131 (-)
LOC122346225 NA coding downstream 142770 5431264 ~ 5431394 (-)
golga3 LOC107684982,LOC107595916,LOC107741281,LOC107672616 coding downstream 144696 5412669 ~ 5429468 (-)
ankle2 ankle2,LOC107597302,LOC107684979,LOC107672626,LOC107741250,LOC107595914,LOC107752143 coding downstream 163670 5398894 ~ 5410494 (-)
foxn4 foxn4,LOC107654613 coding upstream 23440 5621069 ~ 5629286 (-)
kctd10 kctd10,LOC107597295,LOC107595924,LOC107672630,LOC107752136 coding upstream 50626 5648255 ~ 5653029 (-)
mmab LOC107752154,LOC107597358,LOC107654603,LOC107672637,LOC107741242,LOC107595926 coding upstream 71164 5668793 ~ 5671129 (-)
trpv4 trpv4,LOC107752140,LOC107741238,LOC107654595,LOC107672638 coding upstream 222723 5820352 ~ 5842997 (-)
gltpa gltpa,gltp,LOC107752155,LOC107654619,LOC107741237,LOC107597288,LOC107595968 coding upstream 246049 5843678 ~ 5849639 (-)
LOC122345808 NA non-coding downstream 404915 5142578 ~ 5169249 (-)
G33334 NA non-coding downstream 498130 5075761 ~ 5076034 (-)
G33333 NA non-coding downstream 520261 5034111 ~ 5053903 (-)
G33332 NA non-coding downstream 540210 5032563 ~ 5033954 (-)
G33330 NA non-coding downstream 546349 5024945 ~ 5027815 (-)
G33409 LOC107684993,LOC107597297,LOC106585658 non-coding upstream 3780 5601409 ~ 5602204 (-)
G33423 acacb,LOC107752147,LOC107654593 non-coding upstream 20636 5618265 ~ 5620705 (-)
G33434 NA non-coding upstream 56451 5654080 ~ 5654764 (-)
G33446 NA non-coding upstream 82054 5679683 ~ 5684284 (-)
G33533 NA non-coding upstream 298499 5896128 ~ 5897353 (-)
G33175 NA other downstream 951106 4622490 ~ 4623058 (-)
LOC122346168 srrm4,LOC107720865,LOC107702227,LOC107561260,LOC107656798 other downstream 1381083 4144856 ~ 4193081 (-)
piwil2 piwil2,LOC107560971,LOC107707823,LOC107702219 other downstream 1675586 3878650 ~ 3898578 (-)
coq5 coq5,LOC107560969,LOC107707852,LOC107656810,LOC107561264,LOC107702223,LOC107707851,LOC107560965,LOC101158254,LOC107755815,LOC107561265 other downstream 1821400 3744675 ~ 3752764 (-)
G32908 sema4c,LOC107697240,LOC107708238,LOC107699920 other downstream 2613987 2951462 ~ 2960177 (-)
G33758 LOC107596916,LOC107710760,LOC107700938,LOC107587412,LOC107693817 other upstream 1226542 6824171 ~ 6826182 (-)
usp20 usp20,LOC107691016,LOC107693839,LOC107710745 other upstream 1325217 6922846 ~ 6943203 (-)
G33998 LOC108444092 other upstream 1784717 7382346 ~ 7397153 (-)
LOC122345606 LOC107712378 other upstream 2109341 7706970 ~ 7711824 (-)
si:dkey-220k22.3 NA other upstream 2120936 7718565 ~ 7721758 (-)

Expression


Co-expression Network